282 lines
11 KiB
Text
282 lines
11 KiB
Text
|
|
<!DOCTYPE html>
|
|
<html>
|
|
<head>
|
|
<title>GRC and Collaborators - Genome Reference Consortium</title>
|
|
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
|
<meta name="ncbi_app" content="grc" />
|
|
<meta name="ncbi_db" content="none" />
|
|
<meta name="ncbi_pdid" content="screen_default" />
|
|
<meta name="ncbi_pagename" content="credits" />
|
|
<meta name="ncbi_pagetitle" content="GRC and Collaborators" />
|
|
|
|
<link rel="stylesheet" type="text/css" href="/grc/static/grc/css/grc.css" />
|
|
<style>
|
|
#menu ul#primary a#creditsMenuItem {
|
|
border: 1px solid #666;
|
|
border-bottom: none;
|
|
background: #333;
|
|
padding-bottom: 6px;
|
|
margin-top: 0;
|
|
color: #ff9933;
|
|
text-decoration: none;
|
|
}
|
|
|
|
|
|
#menu ul#secondary li a#credits-creditsMenuItem {
|
|
color: #EFEFEF;
|
|
}
|
|
</style>
|
|
|
|
<link rel="stylesheet" type="text/css" href="/core/jig/1.14.8/css/jig.min.css" />
|
|
|
|
<script type="text/javascript" src="/core/jig/1.14.8/js/jig.min.js"></script>
|
|
|
|
<script type="text/javascript" src="/grc/static/grc/js/grc.js"></script>
|
|
|
|
|
|
</head>
|
|
<body>
|
|
<noscript>
|
|
<p>
|
|
<b>Warning:</b> this web site requires JavaScript to function. <a href="/guide/browsers#js_settings">more...</a>
|
|
</p>
|
|
</noscript>
|
|
<div id="header-container">
|
|
<a href="/grc">
|
|
<div id="header">
|
|
<img alt="GRC logo" src="/grc/static/grc/img/GRC_logo_reasonably_small.png" /><img src="/grc/static/grc/img/TitleBanner.png" alt="Genome Reference Consortium" /></a>
|
|
</div>
|
|
</div>
|
|
<div id="page">
|
|
<a id="skipnav" href="#main">Skip navigation and go to main content</a>
|
|
<div id="menu">
|
|
<ul id="primary">
|
|
<li><a href="/grc" title="GRC home" id="homeMenuItem">GRC Home</a></li>
|
|
<li><a href="/grc/data" title="Data" id="dataMenuItem">Data</a>
|
|
|
|
</li>
|
|
<li><a href="/grc/help" title="Information and help" id="helpMenuItem">Help</a></li>
|
|
<li><a href="/grc/report-an-issue" title="Report a problem" id="reportAnIssueMenuItem">Report an Issue</a></li>
|
|
<li><a href="/grc/contact-us" title="contact us" id="contactUsMenuItem">Contact Us</a></li>
|
|
<li><a href="/grc/credits" title="credits" id="creditsMenuItem">Credits</a></li>
|
|
|
|
<li><a href="/projects/genome/assembly/grc/curation" title="Curators only, authentication required" id="curatorsOnlyMenuItem">Curators Only</a></li>
|
|
|
|
</ul>
|
|
</div><!--end menu-->
|
|
<div id="main"><a name="main"></a>
|
|
<div id="credits">
|
|
<div id="contents" style="overflow:hidden;">
|
|
|
|
<div id="grc-cms-content">
|
|
|
|
<h1 id="grc-and-collaborators">GRC and Collaborators</h1>
|
|
|
|
<p>The GRC is a collaborative effort and only works with input from the larger scientific community. We strive to work closely with external groups to gather all relevant data.</p>
|
|
|
|
<!--div[data-jig=ncbitabs -->
|
|
|
|
<div data-jig="ncbitabs">
|
|
<ul>
|
|
<li><a href="#tabs-1">Scientific Advisory Board</a></li>
|
|
<li><a href="#tabs-2">Genome-Wide Collaborators</a></li>
|
|
<li><a href="#tabs-3">Region-Specific Collaborators</a></li>
|
|
<li><a href="#tabs-4">GRC Staff</a></li>
|
|
</ul>
|
|
<!-- tabs-1 -->
|
|
<div id="tabs-1">
|
|
<h2 id="current-members">Current Members</h2>
|
|
<p><br/>
|
|
<strong><a href="https://hudsonalpha.org/myers-lab-researchers-publish-review/">Richard Myers</a></strong><br/>
|
|
President, Director and Investigator, HudsonAlpha Institute for Biotechnology, Huntsville, AL
|
|
<br/> <br/>
|
|
<strong><a href="https://www.jcvi.org/about/gsutton">Granger Sutton</a></strong><br/>
|
|
Senior Director of Informatics, J. Craig Venter Institute, Rockville, MD
|
|
<br/> <br/>
|
|
<strong><a href="http://eichlerlab.gs.washington.edu/evan.html">Evan Eichler</a></strong><br/>
|
|
Principal Investigator, Department of Genome Sciences, University of Washington, Seattle, WA; Howard Hughes Medical Institute
|
|
<br/> <br/>
|
|
<strong><a href="http://users.soe.ucsc.edu/~kent/">Jim Kent</a></strong><br/>
|
|
Research Scientist, University of California, Santa Cruz, CA
|
|
<br/> <br/>
|
|
<strong><a href="http://big.crg.cat/people/roderic_guigo_serra">Roderic Guigo</a></strong><br/>
|
|
Coordinator, Bioinformatics and Genomics Program, Center for Genomic Regulation, Universitat Pompeu Fabra, Barcelona, Catalonia, Spain
|
|
<br/> <br/>
|
|
<strong><a href="https://www.jax.org/research-and-faculty/faculty/carol-bult">Carol Bult</a></strong><br/>
|
|
Professor, The Jackson Laboratory, Bar Harbor, ME
|
|
<br/> <br/>
|
|
<strong><a href="http://www.embl.de/research/units/genome_biology/korbel/">Jan Korbel</a></strong><br/>
|
|
Group Leader, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
|
|
<br/> <br/>
|
|
<strong><a href="http://www.hmgc.mcw.edu/faculty/worthey.htm">Elizabeth Worthey</a></strong><br/>
|
|
Assistant Professor, Medical College of Wisconsin, Milwaukee, WI
|
|
<br/> </p>
|
|
<h2 id="past-members">Past Members</h2>
|
|
<p><br/>
|
|
<strong><a href="https://www.sanger.ac.uk/people/category/faculty">Matthew Hurles</a></strong><br/>
|
|
Scientist, Wellcome Sanger Institute, Hinxton, UK
|
|
<br/> <br/>
|
|
<strong><a href="https://www.bcm.edu/people/view/b1560782-ffed-11e2-be68-080027880ca6">Richard Gibbs</a></strong><br/>
|
|
Director, Human Genome Sequencing Center and Wofford Cain Professor of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX
|
|
<br/> <br/>
|
|
<strong><a href="http://www.sanger.ac.uk/research/faculty/dstemple/">Derek Stemple</a></strong><br/>
|
|
Head of Mouse and Zebrafish Genetics, Wellcome Sanger Institute, Hinxton, UK
|
|
<br/></p>
|
|
</div>
|
|
<!-- end tabs-1 -->
|
|
<!-- tabs-2 -->
|
|
<div id="tabs-2">
|
|
<p><br/>
|
|
<strong><a href="http://eichlerlab.gs.washington.edu/">Eichler Lab</a></strong><br/>
|
|
Fosmid end analysis to identify problem regions and sequence to fill gaps in human.<br/>
|
|
- Evan Eichler<br/>
|
|
- Jeff Kidd
|
|
<br/> <br/>
|
|
<strong><a href="https://www.chem.wisc.edu/users/schwartz">Schwartz Lab</a></strong><br/>
|
|
Optical map information to identify problems and confirm joins in human and mouse.<br/>
|
|
- David Schwartz<br/>
|
|
- Steve Goldstein
|
|
<br/> <br/>
|
|
<strong><a href="http://grupsderecerca.uab.cat/cacereslab/">Caceres Lab</a></strong><br/>
|
|
Experimental follow-up on regions of the genome that seem to carry an inversion. These may be polymorphisms or errors.<br/>
|
|
- Mario Caceres
|
|
<br/> <br/>
|
|
<strong><a href="http://mccarrolllab.com/">McCarroll Lab</a></strong><br/>
|
|
Admixture mapping to localize unlocalized and unplaced assembly sequences.<br/>
|
|
- Giulio Genovese
|
|
<br/> <br/>
|
|
<strong><a href="http://www.bccrc.ca/dept/terry-fox-laboratory/faculty/Lansdorp">Lansdorp Lab</a></strong><br/>
|
|
Strand-seq mapping to correct inversions and localize unlocalized and unplaced assembly sequences. Strand-seq analysis for zebrafish.<br/>
|
|
- Peter Lansdorp<br/>
|
|
- Mark Hills
|
|
<br/> <br/>
|
|
<strong><a href="http://www.sanger.ac.uk/research/faculty/dstemple/">Stemple Lab</a></strong><br/>
|
|
SATMAP (high density meiotic map) and GAPMAP (SATMAP extension) in zebrafish.<br/>
|
|
- Derek Stemple
|
|
<br/> <br/>
|
|
<strong><a href="http://www.sanger.ac.uk/research/projects/vertebrategenome/havana/">HAVANA Group</a></strong><br/>
|
|
Identification and interpretation of gene-linked problems via the manual annotation of the human, mouse and zebrafish genomes.<br/>
|
|
- Jonathan M. Mudge<br/>
|
|
- Laurens Wilming
|
|
<br/> <br/>
|
|
<strong><a href="https://www.ncbi.nlm.nih.gov/refseq/">RefSeq Group</a></strong><br/>
|
|
Identification of genome assembly issues that impact gene annotation through analysis and curation of human, mouse, and zebrafish RefSeqs.<br/>
|
|
<br/></p>
|
|
</div>
|
|
<!-- end tabs-2 -->
|
|
<!-- tabs-3 -->
|
|
<div id="tabs-3">
|
|
<p><br/>
|
|
<strong>Human Genome</strong><br/>
|
|
<br/>
|
|
<strong>UGT2B17 Region:</strong> <a href="/pubmed/18760392">Xue et al. 2008</a><br/>
|
|
<br/>
|
|
<strong>MAPT Region:</strong> <a href="/pubmed/19165922">Zody et al. 2008</a><br/>
|
|
<br/>
|
|
<strong>MHC:</strong> <a href="http://vega.sanger.ac.uk/info/data/MHC_Homo_sapiens.html">Chromosome 6 MHC haplotype project</a><br/>
|
|
<br/>
|
|
<strong>Chromosome 15 gaps:</strong> <a href="/pubmed/19490611">Garber et al. 2009</a><br/>
|
|
<br/>
|
|
<strong>X and Y chromosomes:</strong> <a href="http://pagelab.wi.mit.edu/lab-members">Page Lab at the Whitehead Institute</a><br/>
|
|
<br/>
|
|
<strong>LRC:</strong> <a href="/pubmed/21206914">Chromosome 19 LRC haplotype project, Pyo et al. 2010</a><br/>
|
|
<br/>
|
|
<strong>CYP2D6:</strong> <a href="http://www.pgrn.org/">Pharmacogenomics Research Network (Rochelle Long)</a><br/>
|
|
<br/>
|
|
<strong>Centromere:</strong> <a href="/pubmed/24501022">Miga KH et al. 2014</a><br/>
|
|
<br/>
|
|
<strong>Acrocentric chromosomes:</strong> <a href="/pubmed/23990606">Floutsakou I et al. 2013</a><br/>
|
|
<br/>
|
|
<strong>Mouse Genome</strong><br/>
|
|
<br/>
|
|
<strong><em>Idd</em> regions in the NOD mouse genome:</strong> <a href="https://www.sanger.ac.uk/science/collaboration/sequencing-idd-regions-nod-mouse-genome">NOD group at the Wellcome Sanger Institute</a><br/>
|
|
<br/>
|
|
<strong>X and Y chromosomes:</strong> <a href="http://pagelab.wi.mit.edu/lab-members">Page Lab at the Whitehead Institute</a></p>
|
|
</div>
|
|
<!-- end tabs-3 -->
|
|
<!-- tabs-4 -->
|
|
<div id="tabs-4">
|
|
<h2 id="wellcome-sanger-institute">Wellcome Sanger Institute</h2>
|
|
<p><br/>
|
|
<strong>Current Members</strong><br/>
|
|
- Richard Durbin<br/>
|
|
- Kerstin Howe<br/>
|
|
- Jo Wood<br/>
|
|
- Joanna Collins<br/>
|
|
- Sarah Pelan<br/>
|
|
- Will Chow<br/>
|
|
- James Torrance<br/>
|
|
<br/>
|
|
<strong>Past Members</strong><br/>
|
|
- Tim Hubbard<br/>
|
|
- Glen Threadgold<br/>
|
|
<br/></p>
|
|
<h2 id="mcdonnell-genome-institute-at-wa">McDonnell Genome Institute at Washington University</h2>
|
|
<p><br/>
|
|
- Ira Hall <br/>
|
|
- Tina Graves<br/>
|
|
- Derek Albracht<br/>
|
|
- Milinn Kremitzki<br/>
|
|
- Susie Rock<br/>
|
|
<br/></p>
|
|
<h2 id="european-bioinformatics-institut">European Bioinformatics Institute</h2>
|
|
<p><br/>
|
|
- Paul Flicek<br/>
|
|
- Laura Clarke<br/>
|
|
- Bronwen Aken<br/>
|
|
<br/></p>
|
|
<h2 id="national-center-for-biotechnolog">National Center for Biotechnology Information</h2>
|
|
<p><br/>
|
|
<strong>Current Members</strong><br/>
|
|
- Valerie Schneider<br/>
|
|
- Hsiu-Chuan Chen<br/>
|
|
- Nathan Bouk<br/>
|
|
- Tayebeh Rezaie<br/>
|
|
<br/>
|
|
<strong>Past Members</strong><br/>
|
|
- Deanna Church<br/>
|
|
- Eric Weitz<br/>
|
|
<br/></p>
|
|
<h2 id="the-zebrafish-model-organism-dat">The Zebrafish Model Organism Database</h2>
|
|
<p><br/>
|
|
- Monte Westerfield<br/>
|
|
- Ken Frazer<br/>
|
|
- Sridhar Ramachandran<br/>
|
|
<br/></p>
|
|
</div>
|
|
<!-- end tabs-4 -->
|
|
</div>
|
|
|
|
|
|
</div>
|
|
<script>
|
|
if (jQuery) {
|
|
jQuery(function(){
|
|
(function($){
|
|
$('#grc-cms-content table').ncbigrid();
|
|
})(jQuery);
|
|
})
|
|
}
|
|
</script>
|
|
|
|
</div>
|
|
</div>
|
|
<div class="cleaner"></div>
|
|
<div id="footer">
|
|
<ul>
|
|
<li><a title="Get GRC data via FTP" href="https://ftp.ncbi.nlm.nih.gov/pub/grc/">FTP</a></li>
|
|
<li><a target="_blank" href="https://www.genome.gov">NHGRI</a></li>
|
|
<li><a target="_blank" href="http://www.wellcome.ac.uk">Wellcome Sanger Institute</a></li>
|
|
<li><a target="_blank" href="https://www.hhs.gov">HHS</a></li>
|
|
<li><a target="_blank" href="https://www.nih.gov">NIH</a></li>
|
|
<li><a target="_blank" href="https://www.nih.gov/web-policies-notices">Accessibility</a></li>
|
|
<li class="last"><a target="_blank" href="https://www.hhs.gov/vulnerability-disclosure-policy/index.html">HHS Vulnerability Disclosure</a></li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div><!-- end page -->
|
|
|
|
<script type="text/javascript" src="/portal/portal3rc.fcgi/rlib/js/InstrumentNCBIBaseJS/InstrumentPageStarterJS.js"></script>
|
|
</body>
|
|
</html>
|