882 lines
62 KiB
HTML
882 lines
62 KiB
HTML
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<li role="presentation">
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<a title=" Tool for finding local regions of sequence similarity " href="http://blast.ncbi.nlm.nih.gov/Blast.cgi" aria-haspopup="true" role="menuitem">BLAST (Basic Local Alignment Search Tool)</a>
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</li>
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<li role="presentation">
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<a title=" BLAST programs for a local computer " href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download" aria-haspopup="true" tabindex="-1" role="menuitem">BLAST (Stand-alone)</a>
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</li>
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<li role="presentation">
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<a title=" URL application programming interface for searching, linking and downloading data within NCBI's Entrez system " href="/books/NBK25501/ " aria-haspopup="true" tabindex="-1" role="menuitem">E-Utilities</a>
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</li>
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<a title=" DNA and RNA sequences submitted to NCBI " href="/genbank/" aria-haspopup="true" tabindex="-1" role="menuitem">GenBank</a>
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<a title=" Web tool for simple submissions of nucleotide sequences " href="/WebSub/?tool=genbank" aria-haspopup="true" tabindex="-1" role="menuitem">GenBank: BankIt</a>
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</li>
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<li role="presentation">
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<a title=" Software tool for complex submissions of nucleotide sequences " href="/projects/Sequin/" aria-haspopup="true" tabindex="-1" role="menuitem">GenBank: Sequin</a>
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</li>
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<li role="presentation">
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<a title=" Command-line program for submitting sequence data " href="/genbank/tbl2asn2/" aria-haspopup="true" tabindex="-1" role="menuitem">GenBank: tbl2asn</a>
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</li>
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<li role="presentation">
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<a title=" Stand-alone application for analyzing sequence data " href="/tools/gbench/" aria-haspopup="true" tabindex="-1" role="menuitem">Genome Workbench</a>
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</li>
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<li role="presentation">
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<a title=" Data from the NIAID Influenza Genome Sequencing Project " href="/genomes/FLU/" aria-haspopup="true" tabindex="-1" role="menuitem">Influenza Virus</a>
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</li>
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<li role="presentation">
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<a title=" Nucleotide sequence data in GenBank and RefSeq " href="/nuccore" aria-haspopup="true" tabindex="-1" role="menuitem">Nucleotide Database</a>
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</li>
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<li role="presentation">
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<a title=" Sets of nucleotide sequences representing a population " href="/popset" aria-haspopup="true" tabindex="-1" role="menuitem">PopSet</a>
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</li>
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<li role="presentation">
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<a title=" Designs PCR primers and analyzes them for target specificity using BLAST. " href="/tools/primer-blast/" aria-haspopup="true" tabindex="-1" role="menuitem">Primer-BLAST</a>
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</li>
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<li role="presentation">
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<a title=" Tool for aligning proteins to genomic DNA " href="/sutils/static/prosplign/prosplign.html" aria-haspopup="true" tabindex="-1" role="menuitem">ProSplign</a>
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</li>
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<li role="presentation">
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<a title=" Curated nucleotide and protein sequences produced by NCBI " href="/refseq/" aria-haspopup="true" tabindex="-1" role="menuitem">Reference Sequence (RefSeq)</a>
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</li>
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<li role="presentation">
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<a title=" RefSeqGene reference standards for genomic sequences of well-characterized genes " href="/refseq/rsg/" aria-haspopup="true" tabindex="-1" role="menuitem">RefSeqGene</a>
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</li>
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<li role="presentation">
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<a title=" Database of sequences reads from next generation sequencing technologies " href="/sra/" aria-haspopup="true" tabindex="-1" role="menuitem">Sequence Read Archive (SRA)</a>
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</li>
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<li role="presentation">
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<a title=" Tool for aligning transcripts to genomic DNA " href="/sutils/splign/" aria-haspopup="true" tabindex="-1" role="menuitem">Splign</a>
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</li>
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<li role="presentation">
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<a title=" DNA chromatograms, base calls, and quality estimates for single-pass reads. " href="/Traces/trace.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Trace Archive</a>
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</li>
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<li role="presentation">
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<a title=" Gene-centered clusters of transcripts and ESTs " href="/unigene" aria-haspopup="true" tabindex="-1" role="menuitem">UniGene</a>
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</li>
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<li role="presentation">
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<a href="/guide/dna-rna/" aria-haspopup="true" tabindex="-1" role="menuitem">All DNA & RNA Resources...</a>
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</li>
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</ul>
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</li>
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<li role="presentation">
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<a href="#data-software" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Data & Software</a>
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<ul class="actual-resources-submenu data-software ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
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<li role="presentation">
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<a title=" Tool for finding local regions of sequence similarity " href="http://blast.ncbi.nlm.nih.gov/Blast.cgi" aria-haspopup="true" role="menuitem">BLAST (Basic Local Alignment Search Tool)</a>
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</li>
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<li role="presentation">
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<a title=" BLAST programs for a local computer " href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download" aria-haspopup="true" tabindex="-1" role="menuitem">BLAST (Stand-alone)</a>
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</li>
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<li role="presentation">
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<a title=" Program for viewing 3D structures and alignments " href="/Structure/CN3D/cn3d.shtml" aria-haspopup="true" tabindex="-1" role="menuitem">Cn3D</a>
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</li>
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<li role="presentation">
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<a title=" Locates conserved domains within a protein sequence " href="/Structure/cdd/wrpsb.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Conserved Domain Search Service (CD Search)</a>
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</li>
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<li role="presentation">
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<a title=" URL application programming interface for searching, linking and downloading data within NCBI's Entrez system " href="/books/NBK25501/ " aria-haspopup="true" tabindex="-1" role="menuitem">E-Utilities</a>
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</li>
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<li role="presentation">
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<a title=" Web tool for simple submissions of nucleotide sequences " href="/WebSub/?tool=genbank" aria-haspopup="true" tabindex="-1" role="menuitem">GenBank: BankIt</a>
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</li>
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<li role="presentation">
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<a title=" Software tool for complex submissions of nucleotide sequences " href="/projects/Sequin/" aria-haspopup="true" tabindex="-1" role="menuitem">GenBank: Sequin</a>
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</li>
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<li role="presentation">
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<a title=" Command-line program for submitting sequence data " href="/genbank/tbl2asn2/" aria-haspopup="true" tabindex="-1" role="menuitem">GenBank: tbl2asn</a>
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</li>
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<li role="presentation">
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<a title=" Maps proteins from a COG/VOG back to its genome " href="/sutils/protmap.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Genome ProtMap</a>
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</li>
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<li role="presentation">
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<a title=" Stand-alone application for analyzing sequence data " href="/tools/gbench/" aria-haspopup="true" tabindex="-1" role="menuitem">Genome Workbench</a>
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</li>
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<li role="presentation">
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<a title=" Designs PCR primers and analyzes them for target specificity using BLAST. " href="/tools/primer-blast/" aria-haspopup="true" tabindex="-1" role="menuitem">Primer-BLAST</a>
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</li>
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<li role="presentation">
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<a title=" Tool for aligning proteins to genomic DNA " href="/sutils/static/prosplign/prosplign.html" aria-haspopup="true" tabindex="-1" role="menuitem">ProSplign</a>
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</li>
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<li role="presentation">
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<a title=" Searches PubChem Compound by chemical structure " href="http://pubchem.ncbi.nlm.nih.gov/search/search.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">PubChem Structure Search</a>
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</li>
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<li role="presentation">
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<a title=" The SNP database tools page provides links to the general submission guidelines and to the submission handle request. " href="http://www.ncbi.nlm.nih.gov/projects/SNP/" aria-haspopup="true" tabindex="-1" role="menuitem">SNP Submission Tool</a>
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</li>
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<li role="presentation">
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<a title=" Tool for aligning transcripts to genomic DNA " href="/sutils/splign/" aria-haspopup="true" tabindex="-1" role="menuitem">Splign</a>
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</li>
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<li role="presentation">
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<a title=" Tool that generates 3D structural alignments " href="/Structure/VAST/vast.html" aria-haspopup="true" tabindex="-1" role="menuitem">Vector Alignment Search Tool (VAST)</a>
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</li>
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<li role="presentation">
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<a href="/guide/data-software/" aria-haspopup="true" tabindex="-1" role="menuitem">All Data & Software Resources...</a>
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</li>
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</ul>
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</li>
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<li role="presentation">
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<a href="#domains-structures" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Domains & Structures</a>
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<ul class="actual-resources-submenu domains-structures ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
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<li role="presentation">
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<a title=" Database that groups biomedical literature, small molecules, and sequence data in terms of biological relationships. " href="/biosystems/" aria-haspopup="true" role="menuitem">BioSystems</a>
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</li>
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<li role="presentation">
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<a title=" Program for viewing 3D structures and alignments " href="/Structure/CN3D/cn3d.shtml" aria-haspopup="true" tabindex="-1" role="menuitem">Cn3D</a>
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</li>
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<li role="presentation">
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<a title=" Database of conserved protein domains represented by multiple sequence alignments " href="/cdd" aria-haspopup="true" tabindex="-1" role="menuitem">Conserved Domain Database (CDD)</a>
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</li>
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<li role="presentation">
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<a title=" Locates conserved domains within a protein sequence " href="/Structure/cdd/wrpsb.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Conserved Domain Search Service (CD Search)</a>
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</li>
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<li role="presentation">
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<a title=" Database of 3D macromolecular structures derived from PDB " href="/structure/" aria-haspopup="true" tabindex="-1" role="menuitem">Structure (Molecular Modeling Database)</a>
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</li>
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<li role="presentation">
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<a title=" Tool that generates 3D structural alignments " href="/Structure/VAST/vast.html" aria-haspopup="true" tabindex="-1" role="menuitem">Vector Alignment Search Tool (VAST)</a>
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</li>
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<li role="presentation">
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<a href="/guide/domains-structures/" aria-haspopup="true" tabindex="-1" role="menuitem">All Domains & Structures Resources...</a>
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</li>
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</ul>
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</li>
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<li role="presentation">
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<a href="#genes-expression" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Genes & Expression</a>
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<ul class="actual-resources-submenu genes-expression ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
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<li role="presentation">
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<a title=" Database that groups biomedical literature, small molecules, and sequence data in terms of biological relationships. " href="/biosystems/" aria-haspopup="true" role="menuitem">BioSystems</a>
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</li>
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<li role="presentation">
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<a title=" Genotype/Phenotype association studies " href="/gap" aria-haspopup="true" tabindex="-1" role="menuitem">Database of Genotypes and Phenotypes (dbGaP)</a>
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</li>
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<li role="presentation">
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<a title=" URL application programming interface for searching, linking and downloading data within NCBI's Entrez system " href="/books/NBK25501/ " aria-haspopup="true" tabindex="-1" role="menuitem">E-Utilities</a>
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</li>
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<li role="presentation">
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<a title=" Database of gene loci and associated transcripts and proteins " href="/gene" aria-haspopup="true" tabindex="-1" role="menuitem">Gene</a>
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</li>
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<li role="presentation">
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<a title=" Gene Expression Omnibus (GEO) Database " href="/geo/" aria-haspopup="true" tabindex="-1" role="menuitem">Gene Expression Omnibus (GEO) Database </a>
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</li>
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<li role="presentation">
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<a title=" Curated collections of gene expression data sets " href="/gds" aria-haspopup="true" tabindex="-1" role="menuitem">Gene Expression Omnibus (GEO) Datasets</a>
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</li>
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<li role="presentation">
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<a title=" Database of gene expression Profiles for individual sequences " href="/geoprofiles/" aria-haspopup="true" tabindex="-1" role="menuitem">Gene Expression Omnibus (GEO) Profiles</a>
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</li>
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<li role="presentation">
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<a title=" Stand-alone application for analyzing sequence data " href="/tools/gbench/" aria-haspopup="true" tabindex="-1" role="menuitem">Genome Workbench</a>
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</li>
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<li role="presentation">
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<a title=" Sets of homologous eukaryotic genes " href="/homologene" aria-haspopup="true" tabindex="-1" role="menuitem">HomoloGene</a>
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</li>
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<li role="presentation">
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<a title=" Tool for searching, viewing and downloading genomic maps and related data " href="/mapview/" aria-haspopup="true" tabindex="-1" role="menuitem">Map Viewer</a>
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</li>
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<li role="presentation">
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<a title=" Database of human genes and genetic disorders " href="/omim" aria-haspopup="true" tabindex="-1" role="menuitem">Online Mendelian Inheritance in Man (OMIM)</a>
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</li>
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<li role="presentation">
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<a title=" RefSeqGene reference standards for genomic sequences of well-characterized genes " href="/refseq/rsg/" aria-haspopup="true" tabindex="-1" role="menuitem">RefSeqGene</a>
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</li>
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<li role="presentation">
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<a title=" Gene-centered clusters of transcripts and ESTs " href="/unigene" aria-haspopup="true" tabindex="-1" role="menuitem">UniGene</a>
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</li>
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<li role="presentation">
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<a href="/guide/genes-expression/" aria-haspopup="true" tabindex="-1" role="menuitem">All Genes & Expression Resources...</a>
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</li>
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</ul>
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</li>
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<li role="presentation">
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<a href="#genetics-medicine" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Genetics & Medicine</a>
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<ul class="actual-resources-submenu genetics-medicine ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
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<li role="presentation">
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<a title=" Online biomedical books " href="/books" aria-haspopup="true" role="menuitem">Bookshelf</a>
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</li>
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<li role="presentation">
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<a title=" Genotype/Phenotype association studies " href="/gap" aria-haspopup="true" tabindex="-1" role="menuitem">Database of Genotypes and Phenotypes (dbGaP)</a>
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</li>
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<li role="presentation">
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<a title=" Detailed information about genetic tests and labs " href="/gtr/" aria-haspopup="true" tabindex="-1" role="menuitem">Genetic Testing Registry</a>
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</li>
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<li role="presentation">
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<a title=" Data from the NIAID Influenza Genome Sequencing Project " href="/genomes/FLU/" aria-haspopup="true" tabindex="-1" role="menuitem">Influenza Virus</a>
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</li>
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<li role="presentation">
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<a title=" Tool for searching, viewing and downloading genomic maps and related data " href="/mapview/" aria-haspopup="true" tabindex="-1" role="menuitem">Map Viewer</a>
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</li>
|
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<li role="presentation">
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<a title=" Database of human genes and genetic disorders " href="/omim" aria-haspopup="true" tabindex="-1" role="menuitem">Online Mendelian Inheritance in Man (OMIM)</a>
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</li>
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<li role="presentation">
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<a title=" Biomedical literature abstracts " href="/pubmed" aria-haspopup="true" tabindex="-1" role="menuitem">PubMed</a>
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</li>
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<li role="presentation">
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<a title=" Free, full-text articles " href="/pmc/" aria-haspopup="true" tabindex="-1" role="menuitem">PubMed Central (PMC)</a>
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</li>
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<li role="presentation">
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<a title=" Directory of PubMed queries about clinical topics " href="/pubmed/clinical " aria-haspopup="true" tabindex="-1" role="menuitem">PubMed Clinical Queries</a>
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</li>
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<li role="presentation">
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<a title=" RefSeqGene reference standards for genomic sequences of well-characterized genes " href="/refseq/rsg/" aria-haspopup="true" tabindex="-1" role="menuitem">RefSeqGene</a>
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</li>
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<li role="presentation">
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<a href="/guide/genetics-medicine/" aria-haspopup="true" tabindex="-1" role="menuitem">All Genetics & Medicine Resources...</a>
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</li>
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</ul>
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</li>
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<li role="presentation">
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<a href="#genomes-maps" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Genomes & Maps</a>
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<ul class="actual-resources-submenu genomes-maps ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
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<li role="presentation">
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<a title=" A database of genomic structural variation " href="/dbvar" aria-haspopup="true" role="menuitem">Database of Genomic Structural Variation (dbVar)</a>
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</li>
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<li role="presentation">
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<a title=" Command-line program for submitting sequence data " href="/genbank/tbl2asn2/" aria-haspopup="true" tabindex="-1" role="menuitem">GenBank: tbl2asn</a>
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</li>
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<li role="presentation">
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<a title=" Curated genomic DNA sequences " href="/sites/genome" aria-haspopup="true" tabindex="-1" role="menuitem">Genome</a>
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</li>
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<li role="presentation">
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<a title=" Central status pages for genome sequencing projects " href="/bioproject/" aria-haspopup="true" tabindex="-1" role="menuitem">Genome Project</a>
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</li>
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<li role="presentation">
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<a title=" Maps proteins from a COG/VOG back to its genome " href="/sutils/protmap.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Genome ProtMap</a>
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</li>
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<li role="presentation">
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<a title=" Stand-alone application for analyzing sequence data " href="/tools/gbench/" aria-haspopup="true" tabindex="-1" role="menuitem">Genome Workbench</a>
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</li>
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<li role="presentation">
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<a title=" Data from the NIAID Influenza Genome Sequencing Project " href="/genomes/FLU/" aria-haspopup="true" tabindex="-1" role="menuitem">Influenza Virus</a>
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</li>
|
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<li role="presentation">
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<a title=" Tool for searching, viewing and downloading genomic maps and related data " href="/mapview/" aria-haspopup="true" tabindex="-1" role="menuitem">Map Viewer</a>
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</li>
|
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<li role="presentation">
|
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<a title=" Nucleotide sequence data in GenBank and RefSeq " href="/nuccore" aria-haspopup="true" tabindex="-1" role="menuitem">Nucleotide Database</a>
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</li>
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<li role="presentation">
|
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<a title=" Sets of nucleotide sequences representing a population " href="/popset" aria-haspopup="true" tabindex="-1" role="menuitem">PopSet</a>
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</li>
|
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<li role="presentation">
|
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<a title=" Tool for aligning proteins to genomic DNA " href="/sutils/static/prosplign/prosplign.html" aria-haspopup="true" tabindex="-1" role="menuitem">ProSplign</a>
|
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</li>
|
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<li role="presentation">
|
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<a title=" Database of sequences reads from next generation sequencing technologies " href="/sra/" aria-haspopup="true" tabindex="-1" role="menuitem">Sequence Read Archive (SRA)</a>
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</li>
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<li role="presentation">
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<a title=" Tool for aligning transcripts to genomic DNA " href="/sutils/splign/" aria-haspopup="true" tabindex="-1" role="menuitem">Splign</a>
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</li>
|
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<li role="presentation">
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<a title=" DNA chromatograms, base calls, and quality estimates for single-pass reads. " href="/Traces/trace.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Trace Archive</a>
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</li>
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<li role="presentation">
|
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<a href="/guide/genomes-maps/" aria-haspopup="true" tabindex="-1" role="menuitem">All Genomes & Maps Resources...</a>
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</li>
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</ul>
|
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</li>
|
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<li role="presentation">
|
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<a href="#homology" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Homology</a>
|
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<ul class="actual-resources-submenu homology ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
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<li role="presentation">
|
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<a title=" Tool for finding local regions of sequence similarity " href="http://blast.ncbi.nlm.nih.gov/Blast.cgi" aria-haspopup="true" role="menuitem">BLAST (Basic Local Alignment Search Tool)</a>
|
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</li>
|
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<li role="presentation">
|
|
<a title=" BLAST programs for a local computer " href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download" aria-haspopup="true" tabindex="-1" role="menuitem">BLAST (Stand-alone)</a>
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</li>
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<li role="presentation">
|
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<a title=" Pre-computed reports showing proteins with similar sequences " href="/sutils/blink.cgi?mode=query" aria-haspopup="true" tabindex="-1" role="menuitem">BLAST Link (BLink)</a>
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</li>
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<li role="presentation">
|
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<a title=" Database of conserved protein domains represented by multiple sequence alignments " href="/cdd" aria-haspopup="true" tabindex="-1" role="menuitem">Conserved Domain Database (CDD)</a>
|
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</li>
|
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<li role="presentation">
|
|
<a title=" Locates conserved domains within a protein sequence " href="/Structure/cdd/wrpsb.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Conserved Domain Search Service (CD Search)</a>
|
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</li>
|
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<li role="presentation">
|
|
<a title=" Maps proteins from a COG/VOG back to its genome " href="/sutils/protmap.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Genome ProtMap</a>
|
|
</li>
|
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<li role="presentation">
|
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<a title=" Sets of homologous eukaryotic genes " href="/homologene" aria-haspopup="true" tabindex="-1" role="menuitem">HomoloGene</a>
|
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</li>
|
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<li role="presentation">
|
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<a title=" Clusters of related proteins from prokaryotes and organelles " href="/proteinclusters" aria-haspopup="true" tabindex="-1" role="menuitem">Protein Clusters</a>
|
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</li>
|
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<li role="presentation">
|
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<a href="/guide/homology/" aria-haspopup="true" tabindex="-1" role="menuitem">All Homology Resources...</a>
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</li>
|
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</ul>
|
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</li>
|
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<li role="presentation">
|
|
<a href="#literature" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Literature</a>
|
|
<ul class="actual-resources-submenu literature ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
|
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<li role="presentation">
|
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<a title=" Online biomedical books " href="/books" aria-haspopup="true" role="menuitem">Bookshelf</a>
|
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</li>
|
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<li role="presentation">
|
|
<a title=" URL application programming interface for searching, linking and downloading data within NCBI's Entrez system " href="/books/NBK25501/ " aria-haspopup="true" tabindex="-1" role="menuitem">E-Utilities</a>
|
|
</li>
|
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<li role="presentation">
|
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<a title=" Information on journals cited by NCBI records " href="/nlmcatalog/journals" aria-haspopup="true" tabindex="-1" role="menuitem">Journals in NCBI Databases</a>
|
|
</li>
|
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<li role="presentation">
|
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<a title=" Controlled vocabulary for MEDLINE " href="/mesh" aria-haspopup="true" tabindex="-1" role="menuitem">MeSH Database</a>
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</li>
|
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<li role="presentation">
|
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<a title=" Introductory articles about NCBI resources " href="/books/NBK21101/" aria-haspopup="true" tabindex="-1" role="menuitem">NCBI Handbook</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Online, searchable help documentation " href="/books/NBK3831/" aria-haspopup="true" tabindex="-1" role="menuitem">NCBI Help Manual</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" NCBI's monthly newsletter " href="/books/NBK1969/" aria-haspopup="true" tabindex="-1" role="menuitem">NCBI News</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Biomedical literature abstracts " href="/pubmed" aria-haspopup="true" tabindex="-1" role="menuitem">PubMed</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Free, full-text articles " href="/pmc/" aria-haspopup="true" tabindex="-1" role="menuitem">PubMed Central (PMC)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Directory of PubMed queries about clinical topics " href="/pubmed/clinical " aria-haspopup="true" tabindex="-1" role="menuitem">PubMed Clinical Queries</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Reviews of clinical effectiveness research " href="/pubmedhealth/" aria-haspopup="true" tabindex="-1" role="menuitem">PubMed Health</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="/guide/literature/" aria-haspopup="true" tabindex="-1" role="menuitem">All Literature Resources...</a>
|
|
</li>
|
|
</ul>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="#proteins" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Proteins</a>
|
|
<ul class="actual-resources-submenu proteins ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
|
|
<li role="presentation">
|
|
<a title=" Database that groups biomedical literature, small molecules, and sequence data in terms of biological relationships. " href="/biosystems/" aria-haspopup="true" role="menuitem">BioSystems</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Tool for finding local regions of sequence similarity " href="http://blast.ncbi.nlm.nih.gov/Blast.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">BLAST (Basic Local Alignment Search Tool)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" BLAST programs for a local computer " href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download" aria-haspopup="true" tabindex="-1" role="menuitem">BLAST (Stand-alone)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Pre-computed reports showing proteins with similar sequences " href="/sutils/blink.cgi?mode=query" aria-haspopup="true" tabindex="-1" role="menuitem">BLAST Link (BLink)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Database of conserved protein domains represented by multiple sequence alignments " href="/cdd" aria-haspopup="true" tabindex="-1" role="menuitem">Conserved Domain Database (CDD)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Locates conserved domains within a protein sequence " href="/Structure/cdd/wrpsb.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Conserved Domain Search Service (CD Search)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" URL application programming interface for searching, linking and downloading data within NCBI's Entrez system " href="/books/NBK25501/ " aria-haspopup="true" tabindex="-1" role="menuitem">E-Utilities</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Tool for aligning proteins to genomic DNA " href="/sutils/static/prosplign/prosplign.html" aria-haspopup="true" tabindex="-1" role="menuitem">ProSplign</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Clusters of related proteins from prokaryotes and organelles " href="/proteinclusters" aria-haspopup="true" tabindex="-1" role="menuitem">Protein Clusters</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Protein sequence data " href="/protein" aria-haspopup="true" tabindex="-1" role="menuitem">Protein Database</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Curated nucleotide and protein sequences produced by NCBI " href="/refseq/" aria-haspopup="true" tabindex="-1" role="menuitem">Reference Sequence (RefSeq)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="/guide/proteins/" aria-haspopup="true" tabindex="-1" role="menuitem">All Proteins Resources...</a>
|
|
</li>
|
|
</ul>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="#sequence-analysis" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Sequence Analysis</a>
|
|
<ul class="actual-resources-submenu sequence-analysis ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
|
|
<li role="presentation">
|
|
<a title=" Tool for finding local regions of sequence similarity " href="http://blast.ncbi.nlm.nih.gov/Blast.cgi" aria-haspopup="true" role="menuitem">BLAST (Basic Local Alignment Search Tool)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" BLAST programs for a local computer " href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download" aria-haspopup="true" tabindex="-1" role="menuitem">BLAST (Stand-alone)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Pre-computed reports showing proteins with similar sequences " href="/sutils/blink.cgi?mode=query" aria-haspopup="true" tabindex="-1" role="menuitem">BLAST Link (BLink)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Locates conserved domains within a protein sequence " href="/Structure/cdd/wrpsb.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Conserved Domain Search Service (CD Search)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Maps proteins from a COG/VOG back to its genome " href="/sutils/protmap.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Genome ProtMap</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Stand-alone application for analyzing sequence data " href="/tools/gbench/" aria-haspopup="true" tabindex="-1" role="menuitem">Genome Workbench</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Data from the NIAID Influenza Genome Sequencing Project " href="/genomes/FLU/" aria-haspopup="true" tabindex="-1" role="menuitem">Influenza Virus</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Designs PCR primers and analyzes them for target specificity using BLAST. " href="/tools/primer-blast/" aria-haspopup="true" tabindex="-1" role="menuitem">Primer-BLAST</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Tool for aligning proteins to genomic DNA " href="/sutils/static/prosplign/prosplign.html" aria-haspopup="true" tabindex="-1" role="menuitem">ProSplign</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Tool for aligning transcripts to genomic DNA " href="/sutils/splign/" aria-haspopup="true" tabindex="-1" role="menuitem">Splign</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="/guide/sequence-analysis/" aria-haspopup="true" tabindex="-1" role="menuitem">All Sequence Analysis Resources...</a>
|
|
</li>
|
|
</ul>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="#taxonomy" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Taxonomy</a>
|
|
<ul class="actual-resources-submenu taxonomy ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
|
|
<li role="presentation">
|
|
<a title=" The NCBI taxonomy tree in Entrez " href="/taxonomy" aria-haspopup="true" role="menuitem">Taxonomy</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Displays and links Entrez data to each taxonomic node " href="/Taxonomy/Browser/wwwtax.cgi?mode=Root" aria-haspopup="true" tabindex="-1" role="menuitem">Taxonomy Browser</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Creates custom taxonomic trees " href="/Taxonomy/CommonTree/wwwcmt.cgi" aria-haspopup="true" tabindex="-1" role="menuitem">Taxonomy Common Tree</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="/guide/taxonomy/" aria-haspopup="true" tabindex="-1" role="menuitem">All Taxonomy Resources...</a>
|
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</li>
|
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</ul>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="#training-tutorials" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Training & Tutorials</a>
|
|
<ul class="actual-resources-submenu training-tutorials ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
|
|
<li role="presentation">
|
|
<a title=" Central page providing links to tutorials and training materials " href="/education/" aria-haspopup="true" role="menuitem">NCBI Education Page</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Introductory articles about NCBI resources " href="/books/NBK21101/" aria-haspopup="true" tabindex="-1" role="menuitem">NCBI Handbook</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Online, searchable help documentation " href="/books/NBK3831/" aria-haspopup="true" tabindex="-1" role="menuitem">NCBI Help Manual</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" NCBI's monthly newsletter " href="/books/NBK1969/" aria-haspopup="true" tabindex="-1" role="menuitem">NCBI News</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" An introduction to bioinformatics at NCBI " href="/About/primer/" aria-haspopup="true" tabindex="-1" role="menuitem">Science Primer</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="/guide/training-tutorials/" aria-haspopup="true" tabindex="-1" role="menuitem">All Training & Tutorials Resources...</a>
|
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</li>
|
|
</ul>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="#variation" aria-haspopup="true" tabindex="-1" role="menuitem" class="expandRight">Variation</a>
|
|
<ul class="actual-resources-submenu variation ui-ncbibasicmenu" aria-hidden="true" role="menu" style="display: none;">
|
|
<li role="presentation">
|
|
<a title=" A database of genomic structural variation " href="/dbvar" aria-haspopup="true" role="menuitem">Database of Genomic Structural Variation (dbVar)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Genotype/Phenotype association studies " href="/gap" aria-haspopup="true" tabindex="-1" role="menuitem">Database of Genotypes and Phenotypes (dbGaP)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" Database of nucleotide sequence polymorphisms " href="/snp" aria-haspopup="true" tabindex="-1" role="menuitem">Database of Single Nucleotide Polymorphisms (dbSNP)</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a title=" The SNP database tools page provides links to the general submission guidelines and to the submission handle request. " href="http://www.ncbi.nlm.nih.gov/projects/SNP/" aria-haspopup="true" tabindex="-1" role="menuitem">SNP Submission Tool</a>
|
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</li>
|
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<li role="presentation">
|
|
<a href="/guide/variation/" aria-haspopup="true" tabindex="-1" role="menuitem">All Variation Resources...</a>
|
|
</li>
|
|
</ul>
|
|
</li>
|
|
</ul>
|
|
</li>
|
|
<li class="topmenu ui-helper-reset ui-ncbimenu-item-first" id="all-howtos-menu" role="presentation">
|
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<a href="/static/header_footer_ajax/submenu/#howto" class="ui-ncbimenu-first-link-has-submenu ui-ncbimenu-link-first topanchor expandDown" aria-haspopup="true" role="menuitem" tabindex="-1">How To</a>
|
|
<ul id="howto-submenu" aria-hidden="true" class="ui-ncbibasicmenu" role="menu" style="display: none; top: 25px; left: 243.8px;">
|
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<li role="presentation">
|
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<a href="/guide/all/#howtos" aria-haspopup="true" role="menuitem">All How To</a>
|
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</li>
|
|
<li role="presentation">
|
|
<a href="/guide/chemicals-bioassays/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Chemicals & Bioassays</a>
|
|
</li>
|
|
<li role="presentation">
|
|
<a href="/guide/dna-rna/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">DNA & RNA</a>
|
|
</li>
|
|
<li role="presentation">
|
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<a href="/guide/data-software/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Data & Software</a>
|
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</li>
|
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<li role="presentation">
|
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<a href="/guide/domains-structures/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Domains & Structures</a>
|
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</li>
|
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<li role="presentation">
|
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<a href="/guide/genes-expression/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Genes & Expression</a>
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</li>
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<li role="presentation">
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<a href="/guide/genetics-medicine/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Genetics & Medicine</a>
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</li>
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<li role="presentation">
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<a href="/guide/genomes-maps/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Genomes & Maps</a>
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</li>
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<a href="/guide/homology/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Homology</a>
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</li>
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<li role="presentation">
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<a href="/guide/literature/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Literature</a>
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</li>
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<li role="presentation">
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<a href="/guide/proteins/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Proteins</a>
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</li>
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<li role="presentation">
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<a href="/guide/sequence-analysis/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Sequence Analysis</a>
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</li>
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<li role="presentation">
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<a href="/guide/taxonomy/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Taxonomy</a>
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</li>
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<li role="presentation">
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<a href="/guide/training-tutorials/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Training & Tutorials</a>
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</li>
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<li role="presentation">
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<a href="/guide/variation/#howtos" aria-haspopup="true" tabindex="-1" role="menuitem">Variation</a>
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</li>
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</ul>
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</li>
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<li class="offscreen_noflow ui-ncbimenu-item-skip access">
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<a accesskey="0" tabindex="0" title="About My NCBI Accesskeys" href="/guide/browsers/#accesskeys">About NCBI Accesskeys</a>
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</li>
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</ul>
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<div class="myncbi">
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<a id="sign_in" href="https://account.ncbi.nlm.nih.gov/?back_url=https://www.ncbi.nlm.nih.gov/geo/">Sign in to NCBI</a>
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</div>
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</div>
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<div xmlns="" id="geo_navbar">
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<ul class="jig-ncbilocalnav">
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<li>
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<a href="http://www.ncbi.nlm.nih.gov/geo/">GEO Home</a>
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</li>
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<li>
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<a href="#">Documentation</a>
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<ul>
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<li>
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<a href="/geo/info/overview.html">Overview</a>
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</li>
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<li>
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<a href="/geo/info/faq.html">FAQ</a>
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</li>
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<li>
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<a href="/geo/info/">Search Documentation</a>
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<a href="/geo/info/submission.html">Submission Guidelines</a>
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<li>
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<a href="/geo/info/linking.html">Citing and Linking to GEO</a>
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</li>
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<li>
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<a href="/geo/info/qqtutorial.html">How to Construct a Query</a>
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</li>
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<li>
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<a href="/geo/info/download.html">How to Download Data</a>
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</li>
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<li>
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<a href="/geo/info/disclaimer.html">Data Disclaimer</a>
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</li>
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<li>
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<a href="http://www.ncbi.nlm.nih.gov/pmc/?term=10767856,4944384,3531084,3341798,3013736,2686538,2270403,1669752,1619900,1619899,539976,99122">GEO Publications</a>
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</li>
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</ul>
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</li>
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<li>
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<a href="#">Query & Browse</a>
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<ul>
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<li>
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<a href="/gds/">Search GEO DataSets</a>
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</li>
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<li>
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<a href="/geoprofiles/">Search GEO Profiles</a>
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</li>
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<li>
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<a href="/geo/geo2r/">Analyze with GEO2R</a>
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</li>
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<li>
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<a href="/gds/?term=track%5Bfilter%5D">Studies with Genome Data Viewer Tracks</a>
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</li>
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<li>
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<a href="/geo/info/geo_paccess.html">Programmatic Access</a>
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</li>
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<li>
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<a href="/geo/summary/">Repository Browser</a>
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</li>
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<li>
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<a href="ftp://ftp.ncbi.nih.gov/geo/">FTP Site</a>
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</li>
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</ul>
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</li>
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<li>
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<a href="mailto:geo@ncbi.nlm.nih.gov">Email GEO</a>
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</li>
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</ul>
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</div>
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</div>
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<div id="content" class="home">
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<div id="top_right">
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<div id="geo_logo">
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<a href="/geo/">
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<img alt="GEO Logo" src="/geo/img/geo_main.gif" />
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</a>
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</div>
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<div id="home_search" class="input_wrapper">
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<a id="search_dialog_trigger" href="#search_dialog" class="jig-ncbipopper" data-jigconfig="addCloseButton:true, triggerPosition:'bottom left',closeEvent:'click', openEvent:'click'"></a>
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<label for="newacc" class="hide">Accession</label>
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<input type="text" id="newacc" class=" jig-ncbiclearbutton" title="Keyword or GEO Accession" value="" placeholder="Keyword or GEO Accession" />
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<span class="button" id="setacc">Search</span>
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</div>
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<div id="search_dialog" class="hide">
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<div id="search_dialog_content"></div>
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<div id="searchcontrol"></div>
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</div>
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</div>
|
|
<div id="top_section">
|
|
<h1 id="page_title">Gene Expression Omnibus</h1>
|
|
<p>
|
|
GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles.
|
|
</p>
|
|
</div>
|
|
<div xmlns="" id="maincontent" class="twelve_col col last">
|
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<div class="tier firsttier">
|
|
<div class="onecol">
|
|
<div class="firsttier_portlet">
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<div class="portlet_head">
|
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<h2>Getting Started</h2>
|
|
</div>
|
|
<div class="portlet_content">
|
|
<ul>
|
|
<li>
|
|
<a href="/geo/info/overview.html">Overview</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/info/faq.html">FAQ</a>
|
|
</li>
|
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<li>
|
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<a href="/geo/info/datasets.html">About GEO DataSets</a>
|
|
</li>
|
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<li>
|
|
<a href="/geo/info/profiles.html">About GEO Profiles</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/info/geo2r.html">About GEO2R Analysis</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/info/qqtutorial.html">How to Construct a Query</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/info/download.html">How to Download Data</a>
|
|
</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
<div class="onecol">
|
|
<div class="firsttier_portlet">
|
|
<div class="portlet_head">
|
|
<h2>Tools</h2>
|
|
</div>
|
|
<div class="portlet_content">
|
|
<ul>
|
|
<li>
|
|
<a href="/gds/">Search for Studies at GEO DataSets</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geoprofiles/">Search for Gene Expression at GEO Profiles</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/info/">Search GEO Documentation</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/geo2r/">Analyze a Study with GEO2R</a>
|
|
</li>
|
|
<li>
|
|
<a href="/gds/?term=track%5Bfilter%5D">Studies with Genome Data Viewer Tracks</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/info/geo_paccess.html">Programmatic Access</a>
|
|
</li>
|
|
<li>
|
|
<a href="ftp://ftp.ncbi.nlm.nih.gov/geo/">FTP Site</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/encode/">ENCODE Data Listings and Tracks</a>
|
|
</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
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<div class="onecol lastcol">
|
|
<div class="firsttier_portlet">
|
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<div class="portlet_head">
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<h2>Browse Content</h2>
|
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</div>
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<div class="portlet_content">
|
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<ul>
|
|
<li>
|
|
<a href="/geo/summary/">Repository Browser</a>
|
|
</li>
|
|
<li>
|
|
<a href="/sites/GDSbrowser/">DataSets: <span class="counts">4348</span></a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/browse/?view=series">Series: <span class="counts">248434</span></a>
|
|
<a href="/geo/feed/series/">
|
|
<img src="/geo/img/rss.gif" alt="RSS icon" title="New Series RSS feed" />
|
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</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/browse/?view=platforms">Platforms: <span class="counts">27108</span></a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/browse/?view=samples">Samples: <span class="counts">7690169</span></a>
|
|
</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
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</div>
|
|
</div>
|
|
<div class="tier">
|
|
<div class="firsttier_portlet">
|
|
<div class="portlet_title">
|
|
<h2>Information for Submitters</h2>
|
|
</div>
|
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<div class="onecol">
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<div class="firsttier_portlet">
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<div class="portlet_content">
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<ul>
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<li>
|
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<a href="/geo/submitter/">Login to Submit</a>
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</li>
|
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</ul>
|
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</div>
|
|
</div>
|
|
</div>
|
|
<div class="onecol">
|
|
<div class="firsttier_portlet">
|
|
<div class="portlet_content">
|
|
<ul>
|
|
<li>
|
|
<a href="/geo/info/submission.html">Submission Guidelines</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/info/update.html">Update Guidelines</a>
|
|
</li>
|
|
</ul>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
<div class="onecol lastcol">
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<div class="firsttier_portlet">
|
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<div class="portlet_content">
|
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<ul>
|
|
<li>
|
|
<a href="/geo/info/MIAME.html">MIAME Standards</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/info/linking.html">Citing and Linking to GEO</a>
|
|
</li>
|
|
<li>
|
|
<a href="/geo/info/reviewer.html">Guidelines for Reviewers</a>
|
|
</li>
|
|
<li>
|
|
<a href="http://www.ncbi.nlm.nih.gov/pmc/?term=10767856,4944384,3531084,3341798,3013736,2686538,2270403,1669752,1619900,1619899,539976,99122">GEO Publications</a>
|
|
</li>
|
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</ul>
|
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</div>
|
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</div>
|
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</div>
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<div xmlns="" id="footer">
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<span class="helpbar">|<a href="https://www.nlm.nih.gov"> NLM </a>|<a href="https://www.nih.gov"> NIH </a>|<a href="mailto:geo@ncbi.nlm.nih.gov"> Email GEO </a>|<a href="/geo/info/disclaimer.html"> Disclaimer </a>|<a href="https://www.nlm.nih.gov/accessibility.html"> Accessibility </a>|<a href="https://www.hhs.gov/vulnerability-disclosure-policy/index.html"> HHS Vulnerability Disclosure </a>|
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