671 lines
40 KiB
HTML
671 lines
40 KiB
HTML
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<ol class="usa-breadcrumb__list"><li class="usa-breadcrumb__list-item"><a href="/" class="usa-breadcrumb__link"><span>NCBI</span></a></li>
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>
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<li class="usa-breadcrumb__list-item"><a href="/geo/" class="usa-breadcrumb__link"><span>GEO</span></a></li>
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>
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<li class="usa-breadcrumb__list-item usa-current" aria-current="page"><span>ENCODE</span></li></ol>
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<div id="intro">
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<h1>GEO Data Listings for ENCODE</h1>
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<p>
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This page summarizes data submitted to GEO by the <a href="https://www.encodeproject.org/">ENCODE</a> Data Coordination Center.
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</p>
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<p>
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Use this page to search and download ENCODE data of interest, and select tracks to view on the NCBI Genome Data Viewer.
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</p>
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<p>
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Additional data will be added to this page as it becomes available. The last update was July 7, 2023.
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</p>
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<p>
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The <a href="https://www.encodeproject.org/help/getting-started/">ENCODE Portal</a> is the canonical source for all experimental metadata and data from ENCODE and associated projects.
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<div class="usa-alert-body">
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<p>
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Please refer to the <a href="https://www.encodeproject.org/">ENCODE site</a>
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for more detailed information about the project, including <a href="https://www.encodeproject.org/data-standards/">data standards</a>
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and <a href="https://www.encodeproject.org/about/data-use-policy/">data use policies</a>.
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<form method="post" action="#">
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<legend>Amount</legend>
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<ul>
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<li>
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<input id="this_page" type="radio" checked="checked" value="this_page" name="amount" />
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<label for="this_page">This page</label>
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<legend>Format</legend>
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<input id="csv" type="radio" checked="checked" value="csv" name="format" />
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<label for="csv">CSV</label>
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<input title="Download text file" class="usa-button" id="exp_dial_btn" value="Export" />
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<div id="samples_data">
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{
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window.location.href = "?display=" + pagesize + search + "\u0026" + prefix + "sort=" + field;
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}
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function encode_url(href)
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return encodeURIComponent(href);
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}
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<input id="sample-search" type="search" name="search" value="" />
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<input type="hidden" name="display" value="20" />
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<button type="submit">
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<span class="usa-search-submit-text">Search</span>
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</button>
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</div>
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</form>
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</div>
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<div id="count"><span id="count_num">34088</span> results
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</div>
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<div id="viewer_options-samples">
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<button id="view_tracks_btn" class="button" disabled="disabled">View tracks</button>
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<button id="export_btn" class="button">Export</button>
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</div>
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<input type="hidden" id="sort" value="&zsort=sm_id" />
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<div id="pager"><label for="page_num">Page </label><input type="text" id="page_num" size="3" value="1" /> of <span id="page_cnt">1705</span><span id="next"><a href="?page=2&display=20&search=&zsort=sm_id" title="Next page">></a></span><span id="last"><a href="?page=1705&display=20&search=&zsort=sm_id" title="Last page">>></a></span><label for="page_size">Page size </label><select id="page_size" size="1" onchange="changePageSize(this, '&search=&zsort=sm_id');"><option>10</option><option selected="selected">20</option><option>50</option><option>100</option><option>200</option><option>500</option></select></div>
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</div>
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<table id="samples" class="tablesorter usa-table" cellspacing="1">
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<thead>
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<tr>
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<th class="header headerSortUp acc_col" title="Click to sort" onclick="sortBy('&search=',20, 'sm_id', '')">GEO Accession
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</th>
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<th class="header assay_col" title="Click to sort" onclick="sortBy('&search=',20, 'assay', '')">Assay type
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</th>
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<th class="header sam_col" title="Click to sort" onclick="sortBy('&search=',20, 'target', '')">Target
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</th>
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<th class="header sam_col" title="Click to sort" onclick="sortBy('&search=',20, 'sample', '')">Sample
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</th>
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<th class="header sam_col" title="Click to sort" onclick="sortBy('&search=',20, 'project', '')">Project
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</th>
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<th class="header sam_col" title="Click to sort" onclick="sortBy('&search=',20, 'organism', '')">Organism
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</th>
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<th class="view_track_col" title="View data on NCBI Genome Data Viewer">
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<span id="track_col_header">Track</span>
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<input id="uncheckall-samples" type="checkbox" />
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<label for="uncheckall-samples" class="offscreen_noflow">Check/Uncheck all tracks</label>
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</th>
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<th class="ftp lvl12 down_col" title="Download sra or supplementary files">Download</th>
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</tr>
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</thead>
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<tbody>
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<tr>
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||
<td>
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<a href="/geo/query/acc.cgi?acc=GSM7256643">GSM7256643</a>
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</td>
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<td>TF ChIP-seq</td>
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<td>TARDBP</td>
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<td>HepG2</td>
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<td>ENCODE</td>
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<td>Homo sapiens</td>
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<td class="view_track_check"> <input id="track_1" type="checkbox" value="GSM7256643" /><label for="track_1" class="offscreen_noflow">Check track</label></td>
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||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151094">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256643/suppl/">bed,bigbed,bigwig,txt</a></td>
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||
</tr>
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<tr>
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<td>
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||
<a href="/geo/query/acc.cgi?acc=GSM7256642">GSM7256642</a>
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</td>
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<td>TF ChIP-seq</td>
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<td>MTERF4</td>
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<td>HepG2</td>
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<td>ENCODE</td>
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<td>Homo sapiens</td>
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<td class="view_track_check"> <input id="track_2" type="checkbox" value="GSM7256642" /><label for="track_2" class="offscreen_noflow">Check track</label></td>
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||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151093">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256642/suppl/">bed,bigbed,bigwig,txt</a></td>
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</tr>
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<tr>
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<td>
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<a href="/geo/query/acc.cgi?acc=GSM7256641">GSM7256641</a>
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</td>
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<td>TF ChIP-seq</td>
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<td>MTERF4</td>
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<td>HepG2</td>
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<td>ENCODE</td>
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<td>Homo sapiens</td>
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||
<td class="view_track_check"> <input id="track_3" type="checkbox" value="GSM7256641" /><label for="track_3" class="offscreen_noflow">Check track</label></td>
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||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151092">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256641/suppl/">bed,bigbed,bigwig,txt</a></td>
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</tr>
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<tr>
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<td>
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<a href="/geo/query/acc.cgi?acc=GSM7256640">GSM7256640</a>
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</td>
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<td>ChIP-seq</td>
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<td>control</td>
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<td>HCT116</td>
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<td>ENCODE</td>
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<td>Homo sapiens</td>
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<td class="view_track_check"> </td>
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<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151091">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256640/suppl/">txt</a></td>
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</tr>
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<tr>
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<td>
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<a href="/geo/query/acc.cgi?acc=GSM7256639">GSM7256639</a>
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</td>
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<td>ChIP-seq</td>
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<td>control</td>
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<td>HCT116</td>
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<td>ENCODE</td>
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<td>Homo sapiens</td>
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<td class="view_track_check"> </td>
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<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151090">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256639/suppl/">txt</a></td>
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</tr>
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<tr>
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<td>
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<a href="/geo/query/acc.cgi?acc=GSM7256638">GSM7256638</a>
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</td>
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<td>TF ChIP-seq</td>
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<td>RELA</td>
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<td>WTC11</td>
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<td>ENCODE</td>
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<td>Homo sapiens</td>
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||
<td class="view_track_check"> <input id="track_6" type="checkbox" value="GSM7256638" /><label for="track_6" class="offscreen_noflow">Check track</label></td>
|
||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151089">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256638/suppl/">bed,bigbed,bigwig,txt</a></td>
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||
</tr>
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||
<tr>
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||
<td>
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||
<a href="/geo/query/acc.cgi?acc=GSM7256637">GSM7256637</a>
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||
</td>
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||
<td>TF ChIP-seq</td>
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<td>RELA</td>
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<td>WTC11</td>
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||
<td>ENCODE</td>
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<td>Homo sapiens</td>
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||
<td class="view_track_check"> <input id="track_7" type="checkbox" value="GSM7256637" /><label for="track_7" class="offscreen_noflow">Check track</label></td>
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||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151088">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256637/suppl/">bed,bigbed,bigwig,txt</a></td>
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||
</tr>
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||
<tr>
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||
<td>
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||
<a href="/geo/query/acc.cgi?acc=GSM7256334">GSM7256334</a>
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</td>
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<td>TF ChIP-seq</td>
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<td>ATF6</td>
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<td>WTC11</td>
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||
<td>ENCODE</td>
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<td>Homo sapiens</td>
|
||
<td class="view_track_check"> <input id="track_8" type="checkbox" value="GSM7256334" /><label for="track_8" class="offscreen_noflow">Check track</label></td>
|
||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151087">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256334/suppl/">bed,bigbed,bigwig,txt</a></td>
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||
</tr>
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||
<tr>
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||
<td>
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<a href="/geo/query/acc.cgi?acc=GSM7256333">GSM7256333</a>
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</td>
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<td>TF ChIP-seq</td>
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<td>ATF6</td>
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<td>WTC11</td>
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||
<td>ENCODE</td>
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||
<td>Homo sapiens</td>
|
||
<td class="view_track_check"> <input id="track_9" type="checkbox" value="GSM7256333" /><label for="track_9" class="offscreen_noflow">Check track</label></td>
|
||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151086">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256333/suppl/">bed,bigbed,bigwig,txt</a></td>
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</tr>
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<tr>
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<td>
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<a href="/geo/query/acc.cgi?acc=GSM7256332">GSM7256332</a>
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</td>
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<td>TF ChIP-seq</td>
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<td>NR3C1</td>
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<td>K562</td>
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<td>ENCODE</td>
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||
<td>Homo sapiens</td>
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||
<td class="view_track_check"> <input id="track_10" type="checkbox" value="GSM7256332" /><label for="track_10" class="offscreen_noflow">Check track</label></td>
|
||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151085">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256332/suppl/">bed,bigbed,bigwig,txt</a></td>
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||
</tr>
|
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<tr>
|
||
<td>
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<a href="/geo/query/acc.cgi?acc=GSM7256331">GSM7256331</a>
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||
</td>
|
||
<td>TF ChIP-seq</td>
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||
<td>NR3C1</td>
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<td>K562</td>
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<td>ENCODE</td>
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<td>Homo sapiens</td>
|
||
<td class="view_track_check"> <input id="track_11" type="checkbox" value="GSM7256331" /><label for="track_11" class="offscreen_noflow">Check track</label></td>
|
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<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151084">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256331/suppl/">bed,bigbed,bigwig,txt</a></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<a href="/geo/query/acc.cgi?acc=GSM7256330">GSM7256330</a>
|
||
</td>
|
||
<td>ChIP-seq</td>
|
||
<td>control</td>
|
||
<td>heart</td>
|
||
<td>mouseENCODE</td>
|
||
<td>Mus musculus</td>
|
||
<td class="view_track_check"> </td>
|
||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151083">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256330/suppl/">txt</a></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<a href="/geo/query/acc.cgi?acc=GSM7256329">GSM7256329</a>
|
||
</td>
|
||
<td>ChIP-seq</td>
|
||
<td>control</td>
|
||
<td>heart</td>
|
||
<td>mouseENCODE</td>
|
||
<td>Mus musculus</td>
|
||
<td class="view_track_check"> </td>
|
||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151082">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256329/suppl/">txt</a></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<a href="/geo/query/acc.cgi?acc=GSM7256328">GSM7256328</a>
|
||
</td>
|
||
<td>TF ChIP-seq</td>
|
||
<td>CTCF</td>
|
||
<td>HCT116</td>
|
||
<td>ENCODE</td>
|
||
<td>Homo sapiens</td>
|
||
<td class="view_track_check"> </td>
|
||
<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151081">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256328/suppl/">txt</a></td>
|
||
</tr>
|
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<tr>
|
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<td>
|
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<a href="/geo/query/acc.cgi?acc=GSM7256327">GSM7256327</a>
|
||
</td>
|
||
<td>TF ChIP-seq</td>
|
||
<td>CTCF</td>
|
||
<td>HCT116</td>
|
||
<td>ENCODE</td>
|
||
<td>Homo sapiens</td>
|
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<td class="view_track_check"> </td>
|
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<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151080">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256327/suppl/">txt</a></td>
|
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</tr>
|
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<tr>
|
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<td>
|
||
<a href="/geo/query/acc.cgi?acc=GSM7256326">GSM7256326</a>
|
||
</td>
|
||
<td>TF ChIP-seq</td>
|
||
<td>ATF7-NPFF</td>
|
||
<td>HepG2</td>
|
||
<td>ENCODE</td>
|
||
<td>Homo sapiens</td>
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<td class="view_track_check"> <input id="track_16" type="checkbox" value="GSM7256326" /><label for="track_16" class="offscreen_noflow">Check track</label></td>
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<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151079">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256326/suppl/">bed,bigbed,bigwig,txt</a></td>
|
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</tr>
|
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<tr>
|
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<td>
|
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<a href="/geo/query/acc.cgi?acc=GSM7256325">GSM7256325</a>
|
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</td>
|
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<td>TF ChIP-seq</td>
|
||
<td>ATF7-NPFF</td>
|
||
<td>HepG2</td>
|
||
<td>ENCODE</td>
|
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<td>Homo sapiens</td>
|
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<td class="view_track_check"> <input id="track_17" type="checkbox" value="GSM7256325" /><label for="track_17" class="offscreen_noflow">Check track</label></td>
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<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151078">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256325/suppl/">bed,bigbed,bigwig,txt</a></td>
|
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</tr>
|
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<tr>
|
||
<td>
|
||
<a href="/geo/query/acc.cgi?acc=GSM7256273">GSM7256273</a>
|
||
</td>
|
||
<td>TF ChIP-seq</td>
|
||
<td>ZHX1</td>
|
||
<td>HepG2</td>
|
||
<td>ENCODE</td>
|
||
<td>Homo sapiens</td>
|
||
<td class="view_track_check"> <input id="track_18" type="checkbox" value="GSM7256273" /><label for="track_18" class="offscreen_noflow">Check track</label></td>
|
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<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151077">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256273/suppl/">bed,bigbed,bigwig,txt</a></td>
|
||
</tr>
|
||
<tr>
|
||
<td>
|
||
<a href="/geo/query/acc.cgi?acc=GSM7256272">GSM7256272</a>
|
||
</td>
|
||
<td>TF ChIP-seq</td>
|
||
<td>ZHX1</td>
|
||
<td>HepG2</td>
|
||
<td>ENCODE</td>
|
||
<td>Homo sapiens</td>
|
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<td class="view_track_check"> <input id="track_19" type="checkbox" value="GSM7256272" /><label for="track_19" class="offscreen_noflow">Check track</label></td>
|
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<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151076">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256272/suppl/">bed,bigbed,bigwig,txt</a></td>
|
||
</tr>
|
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<tr>
|
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<td>
|
||
<a href="/geo/query/acc.cgi?acc=GSM7256271">GSM7256271</a>
|
||
</td>
|
||
<td>TF ChIP-seq</td>
|
||
<td>ZNF563</td>
|
||
<td>HepG2</td>
|
||
<td>ENCODE</td>
|
||
<td>Homo sapiens</td>
|
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<td class="view_track_check"> <input id="track_20" type="checkbox" value="GSM7256271" /><label for="track_20" class="offscreen_noflow">Check track</label></td>
|
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<td><a href="https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX20151075">sra</a> <a href="https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM7256nnn/GSM7256271/suppl/">bed,bigbed,bigwig,txt</a></td>
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</tr>
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</tbody>
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</table>
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</div>
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</section>
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<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" x="0px" y="0px" viewBox="0 0 249 249" style="enable-background:new 0 0 249 249;" xml:space="preserve">
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stroke-width: 8;
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<g>
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<circle class="st110" cx="123.6" cy="123.2" r="108.2"></circle>
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<style type="text/css">
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<p class="address_footer text-white">National Library of Medicine<br />
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