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2305 lines
No EOL
195 KiB
XML
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<h1 class="res_name"><a href="/gene/">Gene</a></h1>
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<h2 class="res_tagline">Genes and mapped phenotypes</h2>
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<div class="search"><div class="search_form"><label for="database" class="offscreen_noflow">Search database</label><select id="database"><optgroup label="Recent"><option value="medgen">MedGen</option><option value="pubmed">PubMed</option><option value="books">Books</option><option value="clinvar" class="last">ClinVar</option></optgroup><optgroup label="All"><option value="gquery">All Databases</option><option value="assembly" data-ac_dict="assembly">Assembly</option><option value="biocollections">Biocollections</option><option value="bioproject">BioProject</option><option value="biosample">BioSample</option><option value="books">Books</option><option value="clinvar">ClinVar</option><option value="cdd">Conserved Domains</option><option value="gap">dbGaP</option><option value="dbvar">dbVar</option><option value="gene" selected="selected" data-ac_dict="gene">Gene</option><option value="genome" data-ac_dict="genome">Genome</option><option value="gds">GEO DataSets</option><option value="geoprofiles">GEO Profiles</option><option value="gtr">GTR</option><option value="ipg">Identical Protein Groups</option><option value="medgen">MedGen</option><option value="mesh">MeSH</option><option value="nlmcatalog">NLM Catalog</option><option value="nuccore" data-ac_dict="nuccore">Nucleotide</option><option value="omim">OMIM</option><option value="pmc">PMC</option><option value="protein" data-ac_dict="protein">Protein</option><option value="proteinclusters">Protein Clusters</option><option value="protfam">Protein Family Models</option><option value="pcassay">PubChem BioAssay</option><option value="pccompound">PubChem Compound</option><option value="pcsubstance">PubChem Substance</option><option value="pubmed">PubMed</option><option value="snp">SNP</option><option value="sra">SRA</option><option value="structure">Structure</option><option value="taxonomy">Taxonomy</option><option value="toolkit">ToolKit</option><option value="toolkitall">ToolKitAll</option><option value="toolkitbookgh">ToolKitBookgh</option></optgroup></select><div class="nowrap"><label for="term" class="offscreen_noflow" accesskey="/">Search term</label><div class="nowrap"><input type="text" name="term" id="term" title="Search Gene. Use up and down arrows to choose an item from the autocomplete." value="" class="jig-ncbiclearbutton jig-ncbiautocomplete" data-jigconfig="dictionary:'gene',disableUrl:'NcbiSearchBarAutoComplCtrl'" autocomplete="off" data-sbconfig="ds:'no',pjs:'yes',afs:'yes'" /></div><button id="search" type="submit" class="button_search nowrap" cmd="go">Search</button></div></div><ul class="searchlinks inline_list"><set></set><li><a href="/gene/advanced">Advanced</a></li><li class="help"><a id="help" class="jig-ncbihelpwindow" target="ncbihelp" name="help" href="/books/NBK3841/">Help</a></li></ul></div>
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<input name="EntrezSystem2.PEntrez.Gene.Gene_PageController.PreviousPageName" sid="1" type="hidden" value="results" />
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<div id="faceted_search" class="facet_hide">
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<h2 class="offscreen_noflow">Result Filters</h2>
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<div class="facet_cont" data-db="gene" data-default_grps="fg_gene-sources,fg_categories,fg_sequence-content,fg_status" data-sd="db:'gene',op:'select',term:'',qk:'11481',linkname:'',idsfromresult:'12835',extra:''"><ul class="facet" data-filter_id="gene-sources" id="_gene-sources"><li class="filter_grp "><div class="clearfix"><h3>Gene sources</h3><a href="#" data-value_id="" class="clear clear_hide">Clear</a></div><ul><li class="fil_val"><a href="#" data-value_id="genomic">Genomic</a></li></ul></li></ul><ul class="facet" data-filter_id="categories" id="_categories"><li class="filter_grp "><div class="clearfix"><h3>Categories</h3><a href="#" data-value_id="" class="clear clear_hide">Clear</a></div><ul><li class="fil_val"><a href="#" data-value_id="alt-splicing">Alternatively spliced</a></li><li class="fil_val"><a href="#" data-value_id="annotated-genes">Annotated genes</a></li><li class="fil_val"><a href="#" data-value_id="gene-type-protein-coding">Protein-coding</a></li></ul></li></ul><ul class="facet" data-filter_id="sequence-content" id="_sequence-content"><li class="filter_grp "><div class="clearfix"><h3>Sequence content</h3><a href="#" data-value_id="" class="clear clear_hide">Clear</a></div><ul><li class="fil_val"><a href="#" data-value_id="seq-ccds">CCDS</a></li><li class="fil_val"><a href="#" data-value_id="seq-ensembl">Ensembl</a></li><li class="fil_val"><a href="#" data-value_id="refseq">RefSeq</a></li></ul></li></ul><ul class="facet" data-filter_id="status" id="_status"><li class="filter_grp "><div class="clearfix"><h3>Status</h3><a href="#" data-value_id="" class="clear clear_show">Clear</a></div><ul><li class="fil_val selected"><a href="#" data-value_id="current-only">Current</a><span class="fcount">(1)</span></li></ul></li></ul><div id="chr-location-facet-wrapper" data-bid="MCID_67d37c024f3d5e000d298bb6" data-hid="MCID_67d2a666fe1ad803e8633767" data-qky="11481" class="disabled" style="display:none"><ul class="facet" data-filter_id="chromosomal-region" id="_chromosomal-region" data-of="yes"><li class="filter_grp of_grp"><div class="clearfix"><h3>Chromosome locations</h3><a href="#" data-value_id="" class="clear clear_hide">Clear</a></div><ul><a id="facet_ofchromosomal-region" href="#facet_of_divchromosomal-region" class="jig-ncbipopper" data-jigconfig="triggerPosition: 'middle right', destPosition: 'middle left', hasArrow: true, arrowDirection: 'left', closeEvent : 'click', openEvent: 'click', adjustFit: 'autoAdjust', openAnimation: 'none', closeAnimation: 'none', addCloseButton:true, width: '375px'" data-value_id="fetch_more">more...</a><div id="facet_of_divchromosomal-region" style="display:none;" class="of_popup"><h4>Chromosome locations</h4><label for="organism-filter" style="width:100%;margin-bottom:.2em;" class="">Select an organism by typing or scrolling</label><input type="text" placeholder="Enter text to narrow down the list" id="organism-filter" style="width:98%;" autocomplete="off" /><br /><div id="chr-region-tax-list"><select id="of_chromosomal-region" size="9" class="chr-region-tax-list" style="width:100%;"></select></div><div id="chr-location-info-ctrl" data-disabled="disabled"><div class="chr-field"><label for="chr-name">Chromosome</label><br /><select id="chr-name" class="chr-field" disabled="disabled"></select></div><div class="chr-field"><label for="chr-from">From</label><br /><input type="text" name="chr-from" id="chr-from" disabled="disabled" class="chr-field" /></div><div class="chr-field"><label for="chr-to">To</label><br /><input type="text" name="chr-to" id="chr-to" disabled="disabled" class="chr-field" /></div></div><div class="actions clearfix"><button class="jig-ncbibutton of_add apply-chr" data-jigconfig="'color': 'ui-ncbibutton-blue'">Apply</button></div></div></ul></li></ul></div><ul class="facet facet_reset"><li><a href="#" data-value_id="reset">Clear all</a></li></ul><ul class="facet_tools"><li><a id="more_filter_groups_link" href="#more_filter_groups" class="jig-ncbipopper" data-jigconfig="triggerPosition: 'middle right', destPosition: 'top left', hasArrow: true, arrowDirection: 'left', closeEvent : 'click', openEvent: 'click', adjustFit: 'autoAdjust', openAnimation: 'none', closeAnimation: 'none', addCloseButton:true, width: '180px'">
|
||
Show additional filters</a></li><div id="more_filter_groups" style="display:none;" class="facets_dialog"><button class="ui-ncbipopper-close-button ui-ncbipopper-close-button-generated ui-state-default ui-corner-all ui-button-text-only ui-ncbibutton ui-ncbibutton-blue" generated="true" role="button" aria-disabled="false"><span class="ui-button-text">x</span></button><h4>Additional filters</h4><ul class="filter_groups_more facet"><li><input type="checkbox" id="fg_gene-sources" /><label for="fg_gene-sources">Gene sources</label></li><li><input type="checkbox" id="fg_categories" /><label for="fg_categories">Categories</label></li><li><input type="checkbox" id="fg_sequence-content" /><label for="fg_sequence-content">Sequence content</label></li><li><input type="checkbox" id="fg_status" /><label for="fg_status">Status</label></li><li><input type="checkbox" id="fg_chromosomal-region" /><label for="fg_chromosomal-region">Chromosome locations</label></li><li><input id="fg_field_search" type="checkbox" /><label for="fg_field_search">Search fields</label></li></ul><div class="actions clearfix"><button class="filter_groups_more_apply jig-ncbibutton primary-action" id="filter_groups_apply" data-jigconfig="'color': 'ui-ncbibutton-blue'">Show</button></div></div></ul><input name="EntrezSystem2.PEntrez.Gene.Gene_Facets.FacetsUrlFrag" sid="1" type="hidden" value="filters=current-only" /><input name="EntrezSystem2.PEntrez.Gene.Gene_Facets.FacetSubmitted" sid="1" type="hidden" value="false" /><input name="EntrezSystem2.PEntrez.Gene.Gene_Facets.BMFacets" sid="1" type="hidden" value="" /></div>
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<span style="display: block; text-align: center;">S</span>
|
||
<span style="display: block; text-align: center;">I</span>
|
||
<span style="display: block; text-align: center;">D</span>
|
||
<span style="display: block; text-align: center;">E</span>
|
||
<span style="display: block; text-align: center;">B</span>
|
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<span style="display: block; text-align: center;">A</span>
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<span style="display: block; text-align: center;">R</span>
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<div class="results_settings one_setting"><ul class="inline_list left display_settings"><li><a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.Display" sid="0" href="#" class="jig-ncbipopper" data-jigconfig="triggerPosition : 'bottom center',destPosition : 'top center',destSelector : '#display_settings_menu_report', hasArrow : false,openEvent : 'click',closeEvent : 'click',isTriggerElementCloseClick: false,addCloseButton : false, groupName: 'entrez_pg'" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.Display">Full Report<span href="#" class="tgt_dark"></span></a></li></ul><div id="display_settings_menu_report" class="disp_settings tabPopper"><fieldset class="format"><legend>Format</legend><ul class="column_list"><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="1" value="full_report" format="" id="full_report" checked="true" /><label for="full_report">Full Report</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="2" value="full_report" format="text" id="full_reporttext" /><label for="full_reporttext">Full Report (text)</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="3" value="expression" format="" id="expression" /><label for="expression">Expression</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="4" value="gene_table" format="" id="gene_table" /><label for="gene_table">Gene Table</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="5" value="gene_table" format="text" id="gene_tabletext" /><label for="gene_tabletext">Gene Table (text)</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="6" value="generif" format="" id="generif" /><label for="generif">GeneRIF</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="7" value="docsum" format="" id="docsum" /><label for="docsum">Summary</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="8" value="docsum" format="text" id="docsumtext" /><label for="docsumtext">Summary (text)</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="9" value="tabular" format="" id="tabular" /><label for="tabular">Tabular</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="10" value="tabular" format="text" id="tabulartext" /><label for="tabulartext">Tabular (text)</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="11" value="asn1" format="text" id="asn1text" /><label for="asn1text">ASN.1</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="12" value="xml" format="text" id="xmltext" /><label for="xmltext">XML</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.sPresentation" sid="13" value="uilist" format="text" id="uilisttext" /><label for="uilisttext">UI List</label></li></ul></fieldset></div><button name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SetDisplay" sid="1" class="button_apply ncbipopper-close-button" style="display:none">Apply</button><h4 class="content_header send_to align_right jig-ncbipopper" id="sendto" data-jigconfig="triggerPosition:'bottom center', destPosition : 'top center',destSelector : '#send_to_menu', hasArrow : false, openEvent : 'click',closeEvent : 'click', isTriggerElementCloseClick: false, addCloseButton:true, groupName: 'entrez_pg', adjustFit:'none'"><a href="#" sourceContent="send_to_menu" class="tgt_dark">Send to:</a><script type="text/javascript">
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||
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jQuery("#send_to_menu div.submenu:visible").slideUp();
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selectedDiv.slideDown();
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||
jQuery("#sendto").bind("ncbipopperclose", function(){
|
||
jQuery("#send_to_menu div.submenu:visible").css("display","none");
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|
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|
||
</script></h4><div id="send_to_menu" class="tabPopper send_to"><fieldset><legend>Choose Destination</legend><ul class="column_list"><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendTo" sid="1" value="File" id="dest_File" /><label for="dest_File">File</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendTo" sid="2" value="AddToClipboard" id="dest_AddToClipboard" /><label for="dest_AddToClipboard">Clipboard</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendTo" sid="3" value="AddToCollections" id="dest_AddToCollections" /><label for="dest_AddToCollections">Collections</label></li></ul></fieldset><div class="submenu file" id="submenu_File" style="display: none;"><p id="submenu_File_hint" class="hidden"></p><ul><li><label for="file_format">Format</label><select id="file_format" name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.FFormat" sid="1"><option value="full_report" format="text" selected="selected">Full Report (text)</option><option value="gene_table" format="text">Gene Table (text)</option><option value="docsum" format="text">Summary (text)</option><option value="tabular" format="text">Tabular (text)</option><option value="asn1" format="text">ASN.1</option><option value="xml" format="text">XML</option><option value="uilist" format="text">UI List</option></select></li></ul><button name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendToSubmit" sid="1" class="button_apply file ncbipopper-close-button" type="submit" cmd="File">Create File</button></div><div class="submenu addtoclipboard" id="submenu_AddToClipboard" style="display: none;"><p id="submenu_AddToClipboard_hint" class="hidden"></p><button name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendToSubmit" sid="2" class="button_apply clipboard ncbipopper-close-button" type="submit" cmd="AddToClipboard">Add to Clipboard</button></div><div class="submenu addtocollections" id="submenu_AddToCollections" style="display: none;"><p id="submenu_AddToCollections_hint" class="hidden"></p><button name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.SendToSubmit" sid="3" class="button_apply collections ncbipopper-close-button" type="submit" cmd="AddToCollections">Add to Collections</button></div></div><div><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.FileFormat" sid="1" type="hidden" value="full_report" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.LastPresentation" sid="1" type="hidden" value="full_report" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.Presentation" sid="1" type="hidden" value="full_report" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.PageSize" sid="1" type="hidden" value="20" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.LastPageSize" sid="1" type="hidden" value="20" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.Sort" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.LastSort" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.FileSort" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.Format" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.LastFormat" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.PrevPageSize" sid="1" type="hidden" value="20" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.PrevPresentation" sid="1" type="hidden" value="full_report" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_DisplayBar.PrevSort" sid="1" type="hidden" value="" /><input type="hidden" id="coll_startindex" name="CollectionStartIndex" value="1" /></div></div>
|
||
<div>
|
||
|
||
|
||
|
||
</div>
|
||
<div class="">
|
||
<div><span id="result_sel" class="nowrap"></span><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_ResultsController.ResultCount" sid="1" type="hidden" id="resultcount" value="1" /><input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_ResultsController.RunLastQuery" sid="1" type="hidden" /></div>
|
||
|
||
</div>
|
||
<div id="messagearea" class="empty">
|
||
|
||
|
||
|
||
|
||
</div>
|
||
<div class="rprt full-rprt">
|
||
<div>
|
||
<div class="rprt-header">
|
||
<input type="hidden" id="gene-tax-id" value="10090" />
|
||
<h1 class="title" id="gene-name"><span class="gn" style="padding-right:.5em;">Col6a3</span> collagen, type VI, alpha 3 [ <em class="tax">Mus musculus</em> (house mouse)
|
||
]
|
||
</h1>
|
||
<span class="geneid">Gene ID: 12835, updated on
|
||
8-Mar-2025</span>
|
||
</div>
|
||
<div class="download-datasets">
|
||
<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/axios/0.23.0/axios.min.js"></script>
|
||
<h4 class="download-datasets-popper jig-ncbipopper" id="download-asm" style="align-self:start" data-jigconfig="triggerPosition:'bottom center', destPosition : 'top center',destSelector : '#download-datasets-popper-menu', hasArrow : false, openEvent : 'click',closeEvent : 'click', isTriggerElementCloseClick: false, groupName: 'entrez_pg', adjustFit:'none'" role="button" aria-expanded="false" aria-haspopup="true">
|
||
<svg alt="download" class="dlbtn-icon" x="0px" y="0px" width="15px" height="15px" viewBox="0 0 60 60" enable-background="new 0 0 60 60" xml:space="preserve">
|
||
<g>
|
||
<polygon points="48.75,36.25 48.75,48.75 11.25,48.75 11.25,36.25 5,36.25 5,55 55,55 55,36.25 "></polygon>
|
||
<polygon points="42.5,23.75 36.25,23.75 36.25,5 23.75,5 23.75,23.75 17.5,23.75 30,42.5 "></polygon>
|
||
</g>
|
||
</svg>
|
||
<a href="#">Download Datasets</a>
|
||
</h4>
|
||
<div id="download-datasets-popper-menu" style="display:none;">
|
||
<div class="input-group">
|
||
<input type="checkbox" id="datasets-ft-gene-seq-fasta" value="FASTA_GENE" checked="checked" class="download-datasets-included-seq" />
|
||
<label for="datasets-ft-gene-seq-fasta">Gene Sequences (FASTA)</label>
|
||
</div>
|
||
<div class="input-group">
|
||
<input type="checkbox" id="datasets-ft-transcript-seq-fasta" value="FASTA_RNA" class="download-datasets-included-seq" />
|
||
<label for="datasets-ft-transcript-seq-fasta">Transcript sequences (FASTA)</label>
|
||
</div>
|
||
<div class="input-group">
|
||
<input type="checkbox" id="datasets-ft-protein-seq-fasta" value="FASTA_PROTEIN" class="download-datasets-included-seq" />
|
||
<label for="datasets-ft-protein-seq-fasta">Protein sequences(FASTA)</label>
|
||
</div>
|
||
<p style="margin-left:5px;">In addition, your package will include a detailed data report in both TSV and JSONL formats.</p>
|
||
<div class="input-group">
|
||
<label for="datasets-download-file-name">File name</label>
|
||
<input type="text" id="datasets-download-file-name" placeholder="Name your file" style="padding:5px;" value="Col6a3_datasets.zip" />
|
||
</div>
|
||
<input type="hidden" id="download-datasets-base-url" value="https://api.ncbi.nlm.nih.gov/datasets/v2alpha/gene/download" />
|
||
<input type="hidden" id="gene-id-value" value="12835" />
|
||
<button id="datasets-download-submit" data-ga-action="click_begin_download" data-ga-label="download" class="jig-ncbibutton ui-state-default ui-corner-all ui-button-text-only ui-ncbibutton ui-ncbibutton-gray" role="button">
|
||
<span class="ui-button-text">Download</span>
|
||
</button>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="rprt-body">
|
||
|
||
|
||
<div class="rprt-section gene-summary">
|
||
<section class="rprt-section-header" id="summary">
|
||
<h2 id="header-summary">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-summary .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Summary</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Summary_2" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div id="summaryDiv" class="section">
|
||
<dl id="summaryDl">
|
||
<dt class="noline"> Official
|
||
Symbol</dt>
|
||
<dd class="noline">Col6a3<span class="prov">provided by <a href="http://www.informatics.jax.org/mgihome/nomen/" target="_blank" title="Mouse Genome Informatics">MGI</a></span></dd>
|
||
<dt> Official
|
||
Full Name</dt>
|
||
<dd>collagen, type VI, alpha 3<span class="prov">provided by <a href="http://www.informatics.jax.org/mgihome/nomen/" target="_blank" title="Mouse Genome Informatics">MGI</a></span></dd>
|
||
<dt>Primary source</dt>
|
||
<dd>
|
||
<a href="http://www.informatics.jax.org/marker/MGI:88461" data-gblink-text="Ensembl">MGI:MGI:88461</a>
|
||
</dd>
|
||
<dt>See related</dt>
|
||
<dd>
|
||
<a href="http://www.ensembl.org/id/ENSMUSG00000048126" data-gblink-text="Ensembl" class="genome-browser-link" data-genome-browser-link-sort="5" data-gb-url="http://www.ensembl.org/loc/ENSMUSG00000048126">Ensembl:ENSMUSG00000048126</a>
|
||
<a href="https://www.alliancegenome.org/gene/MGI:88461" data-gblink-text="Ensembl" ref="ordinalpos=1&ncbi_uid=12835&link_uid=MGI:88461">AllianceGenome:MGI:88461</a>
|
||
</dd>
|
||
<dt>Gene type</dt>
|
||
<dd>protein coding</dd>
|
||
<dt>RefSeq status</dt>
|
||
<dd>VALIDATED</dd>
|
||
<dt>Organism</dt>
|
||
<dd class="tax">
|
||
<a href="/Taxonomy/Browser/wwwtax.cgi?id=10090" ref="ordinalpos=1&ncbi_uid=12835&link_uid=10090">Mus musculus</a>
|
||
</dd>
|
||
<dt>Lineage</dt>
|
||
<dd class="tax">Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus</dd>
|
||
<dt>Also known as</dt>
|
||
<dd>Col6a-3</dd>
|
||
<dt>Summary</dt>
|
||
<dd>Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be an extracellular matrix structural constituent conferring tensile strength. Acts upstream of or within neuron apoptotic process; phosphatidylinositol 3-kinase/protein kinase B signal transduction; and response to UV. Located in extracellular matrix; extracellular space; and sarcolemma. Part of collagen trimer. Is expressed in several structures, including brain; embryo mesenchyme; genitourinary system; heart and pericardium; and musculoskeletal system. Used to study Ullrich congenital muscular dystrophy and congenital muscular dystrophy. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); chronic kidney disease; dystonia 27; muscular dystrophy (multiple); and primary open angle glaucoma. Orthologous to human COL6A3 (collagen type VI alpha 3 chain). [provided by Alliance of Genome Resources, Mar 2025]</dd>
|
||
<dt>Expression</dt>
|
||
<dd>Broad expression in limb E14.5 (RPKM 62.3), subcutaneous fat pad adult (RPKM 60.9) and 17 other tissues <a href="#gene-expression">See more</a></dd>
|
||
<dt>Orthologs</dt>
|
||
<dd class="ortholog-links">
|
||
<a href="https://www.ncbi.nlm.nih.gov/gene/1293">human</a>
|
||
<a href="/gene/1293/ortholog/">all</a>
|
||
</dd>
|
||
<dt style="padding-top:.5em;">
|
||
<span class="new-icon">NEW</span>
|
||
</dt>
|
||
<dd style="padding-top:.5em;">
|
||
<strong>Try the new <a href="https://www.ncbi.nlm.nih.gov/datasets/gene/id/12835/" data-ga-category="summary" data-ga-action="click_datasets_link" data-ga-label="gene_table" title="View selected attributes for an input list of genes and download datasets containing genomic, transcript and protein sequences along with a detailed data report.">Gene table</a></strong>
|
||
<br />
|
||
<strong>Try the new <a href="https://www.ncbi.nlm.nih.gov/datasets/gene/id/12835/products/" data-ga-category="summary" data-ga-action="click_datasets_link" data-ga-label="transcript_table" title="View selected attributes for an input list of genes and download datasets containing genomic, transcript and protein sequences along with a detailed data report.">Transcript table</a></strong>
|
||
</dd>
|
||
</dl>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-genomic-context">
|
||
<section class="rprt-section-header" id="genomic-context">
|
||
<h2 id="header-genomic-context">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-genomic-context .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Genomic context</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Genomic_Context" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div class="gc_cont">
|
||
<div class="gt_cont_contents">
|
||
<div style="float:right"><span>See Col6a3 in </span><a href="/genome/gdv/?context=gene&acc=12835" class="link-to-gdv genome-browser-link" data-genome-browser-link-sort="1" data-acc="GCF_000001635.27">Genome Data Viewer</a> </div>
|
||
<dl class="dl-chr-info" style="float:left;margin-top:0;">
|
||
<dt>Location: </dt>
|
||
<dd>
|
||
<span style="display:inline-block;">1 D; 1 45.53 cM</span>
|
||
</dd>
|
||
</dl>
|
||
</div>
|
||
<dl class="dl-chr-info exon-count">
|
||
<dt>Exon count: </dt>
|
||
<dd>44</dd>
|
||
</dl>
|
||
<div class="ui-ncbigrid-outer-div" id="genomic-context-tbl-location">
|
||
<div class="ui-ncbigrid-inner-div">
|
||
<table class="jig-ncbigrid" data-jigconfig="">
|
||
<thead>
|
||
<tr>
|
||
<th style="max-width:15%">Annotation release</th>
|
||
<th style="max-width:10%">Status</th>
|
||
<th>Assembly</th>
|
||
<th>
|
||
<span title="Chromosome">Chr</span>
|
||
</th>
|
||
<th>Location</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr>
|
||
<td>RS_2024_02</td>
|
||
<td>current</td>
|
||
<td>GRCm39 (<a href="/assembly/GCF_000001635.27/" ref="ncbi_uid=12835&link_uid=GCF_000001635.27">GCF_000001635.27</a>)</td>
|
||
<td>1</td>
|
||
<td>NC_000067.7 (90694582..90771710, complement) </td>
|
||
</tr>
|
||
<tr>
|
||
<td>108.20200622</td>
|
||
<td>previous assembly</td>
|
||
<td>GRCm38.p6 (<a href="/assembly/GCF_000001635.26/" ref="ncbi_uid=12835&link_uid=GCF_000001635.26">GCF_000001635.26</a>)</td>
|
||
<td>1</td>
|
||
<td>NC_000067.6 (90766860..90844001, complement) </td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
<p class="withnote margin_t2em"><strong>Chromosome 1 - NC_000067.7</strong><img usemap="#nbrMap12835_1877089968" border="0" alt="Genomic Context describing neighboring genes" src="/gutils/geneneighb.fcgi?geneid=12835&nuc_gi=1877089968&n0=Gm35332&n1=LOC128924293&n2=Gm41918&n3=Col6a3&n4=LOC131295992&n5=Gm35381&n6=LOC131295993&n7=Mlph" /><map name="nbrMap12835_1877089968" id="nbrMap12835_1877089968">
|
||
<area shape="rect" onMouseOver="showtip(this,event,'CapStarr-seq enhancer MGSCv37_chr1:92591815-92592016')" onMouseOut="hidetip()" coords="13,23,83,31" alt="Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:92591815-92592016" href="/gene/128924293" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'predicted gene, 35332')" onMouseOut="hidetip()" coords="27,35,87,43" alt="Neighboring gene predicted gene, 35332" href="/gene/102638873" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'predicted gene, 41918')" onMouseOut="hidetip()" coords="125,23,170,31" alt="Neighboring gene predicted gene, 41918" href="/gene/105246663" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_01688')" onMouseOut="hidetip()" coords="266,23,336,31" alt="Neighboring gene STARR-seq mESC enhancer starr_01688" href="/gene/131295992" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'STARR-seq mESC enhancer starr_01689')" onMouseOut="hidetip()" coords="280,35,350,43" alt="Neighboring gene STARR-seq mESC enhancer starr_01689" href="/gene/131295993" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'predicted gene, 35381')" onMouseOut="hidetip()" coords="300,47,366,55" alt="Neighboring gene predicted gene, 35381" href="/gene/102638944" />
|
||
<area shape="rect" onMouseOver="showtip(this,event,'melanophilin')" onMouseOut="hidetip()" coords="352,23,423,31" alt="Neighboring gene melanophilin" href="/gene/171531" />
|
||
</map>
|
||
</p>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="rprt-section gene-genomic-regions-transcripts-products">
|
||
<section class="rprt-section-header" id="genomic-regions-transcripts-products">
|
||
<h2 id="header-genomic-regions-transcripts-products">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-genomic-regions-transcripts-products .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Genomic regions, transcripts, and products</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Genomic_Regions_Transcripts_a" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div>
|
||
<div style="text-align:right;">Go to <a href="#reference-sequences">reference sequence details</a></div>
|
||
</div>
|
||
<div>
|
||
<p class="choose">
|
||
<label for="accession" class="label">Genomic Sequence: </label>
|
||
<select name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_GenomicProductsP.accessionList" sid="1" id="accessionList" data-taxid="10090" data-geneid="12835">
|
||
<option value="NC_000067.7_90694581_90771709">NC_000067.7 Chromosome 1 Reference GRCm39 C57BL/6J</option>
|
||
<option value="NC_000067.6_90766859_90844000">NC_000067.6 Chromosome 1 Reference GRCm38.p6 C57BL/6J</option>
|
||
</select>
|
||
</p>
|
||
</div>
|
||
<div id="NC_000067" class="divAccession">
|
||
<div class="seq-viewer">
|
||
<p class="note-link">
|
||
<strong>Go to nucleotide:</strong>
|
||
<a title="Nucleotide Graphic report" href="/nuccore/NC_000067.7?report=graph&from=90683012&to=90783278&strand=true&app_context=Gene&assm_context=GCF_000001635.27" ref="ordinalpos=1&ncbi_uid=12835&link_uid=NC_000067.7">Graphics</a>
|
||
<a title="Nucleotide FASTA report" href="/nuccore/NC_000067.7?report=fasta&from=90694582&to=90771710&strand=true" ref="ordinalpos=1&ncbi_uid=12835&link_uid=NC_000067.7">FASTA</a>
|
||
<a title="Nucleotide GenBank report" href="/nuccore/NC_000067.7?report=genbank&from=90694582&to=90771710&strand=true" ref="ordinalpos=1&ncbi_uid=12835&link_uid=NC_000067.7">GenBank</a>
|
||
</p>
|
||
<div id="divNC_000067" class="SeqViewerApp" style="clear:both;" data-sv="appname=ncbigene&embedded=true&noslider=1&id=NC_000067.7&from=90683012&to=90783278&strand=true&app_context=Gene&assm_context=GCF_000001635.27">
|
||
<a href="?appname=ncbigene&embedded=true&noslider=1&id=NC_000067.7&from=90683012&to=90783278&strand=true&app_context=Gene&assm_context=GCF_000001635.27"></a>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
<input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_GenomicProductsP.nucleotideLink_NC_000067.7" sid="1" type="hidden" id="nucleotideLink_NC_000067_7_90694581_90771709" value="<p class="note-link"><strong>Go to nucleotide:</strong><a title="Nucleotide Graphic report" href="/nuccore/NC_000067.7?report=graph&amp;from=90683012&amp;to=90783278&amp;strand=true&amp;app_context=Gene&amp;assm_context=GCF_000001635.27" ref="ordinalpos=1&amp;ncbi_uid=12835&amp;link_uid=NC_000067.7">Graphics</a><a title="Nucleotide FASTA report" href="/nuccore/NC_000067.7?report=fasta&amp;from=90694582&amp;to=90771710&amp;strand=true" ref="ordinalpos=1&amp;ncbi_uid=12835&amp;link_uid=NC_000067.7">FASTA</a><a title="Nucleotide GenBank report" href="/nuccore/NC_000067.7?report=genbank&amp;from=90694582&amp;to=90771710&amp;strand=true" ref="ordinalpos=1&amp;ncbi_uid=12835&amp;link_uid=NC_000067.7">GenBank</a></p>" />
|
||
<input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_GenomicProductsP.relString_NC_000067.7" sid="1" type="hidden" id="relString_NC_000067_7_90694581_90771709" value="appname=ncbigene&amp;embedded=true&amp;noslider=1&amp;id=NC_000067.7&amp;from=90683012&amp;to=90783278&amp;strand=true&amp;app_context=Gene&amp;assm_context=GCF_000001635.27" />
|
||
<input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_GenomicProductsP.nucleotideLink_NC_000067.6" sid="1" type="hidden" id="nucleotideLink_NC_000067_6_90766859_90844000" value="<p class="note-link"><strong>Go to nucleotide:</strong><a title="Nucleotide Graphic report" href="/nuccore/NC_000067.6?report=graph&amp;from=90755288&amp;to=90855571&amp;strand=true&amp;app_context=Gene&amp;assm_context=GCF_000001635.26" ref="ordinalpos=1&amp;ncbi_uid=12835&amp;link_uid=NC_000067.6">Graphics</a><a title="Nucleotide FASTA report" href="/nuccore/NC_000067.6?report=fasta&amp;from=90766860&amp;to=90844001&amp;strand=true" ref="ordinalpos=1&amp;ncbi_uid=12835&amp;link_uid=NC_000067.6">FASTA</a><a title="Nucleotide GenBank report" href="/nuccore/NC_000067.6?report=genbank&amp;from=90766860&amp;to=90844001&amp;strand=true" ref="ordinalpos=1&amp;ncbi_uid=12835&amp;link_uid=NC_000067.6">GenBank</a></p>" />
|
||
<input name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_GenomicProductsP.relString_NC_000067.6" sid="1" type="hidden" id="relString_NC_000067_6_90766859_90844000" value="appname=ncbigene&amp;embedded=true&amp;noslider=1&amp;id=NC_000067.6&amp;from=90755288&amp;to=90855571&amp;strand=true&amp;app_context=Gene&amp;assm_context=GCF_000001635.26" />
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-gene-expression">
|
||
<section class="rprt-section-header" id="gene-expression">
|
||
<h2 id="header-gene-expression">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-gene-expression .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Expression</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Expression" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div>
|
||
<div style="text-align:right;">
|
||
<a href="/gene/12835/?report=expression" data-url="/gene/12835/?report=expression" id="gene-expression-see-details">See details</a>
|
||
</div>
|
||
<div id="gene-expression-app" data-url="https://www.ncbi.nlm.nih.gov/gene/12835" data-report-type="summary">
|
||
<div>
|
||
<script type="text/javascript">
|
||
|
||
window.tissues_data = {'liver E14': {'id': '12835_SAMN01164143', 'gene': 12835, 'sample_id': 'SAMN01164143', 'source_name': 'liver E14', 'var': 0.0, 'full_rpkm': 1.33023, 'exp_rpkm': 1.33, 'exp_total': 1215498, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605336}, 'CNS E11.5': {'id': '12835_SAMN01164142', 'gene': 12835, 'sample_id': 'SAMN01164142', 'source_name': 'CNS E11.5', 'var': 0.0, 'full_rpkm': 3.0409, 'exp_rpkm': 3.04, 'exp_total': 2475784, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605337}, 'whole brain E14.5': {'id': '12835_SAMN01164141', 'gene': 12835, 'sample_id': 'SAMN01164141', 'source_name': 'whole brain E14.5', 'var': 0.0, 'full_rpkm': 3.70697, 'exp_rpkm': 3.71, 'exp_total': 2690690, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605338}, 'liver E14.5': {'id': '12835_SAMN01164140', 'gene': 12835, 'sample_id': 'SAMN01164140', 'source_name': 'liver E14.5', 'var': 0.0, 'full_rpkm': 1.12942, 'exp_rpkm': 1.13, 'exp_total': 710956, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605339}, 'CNS E18': {'id': '12835_SAMN01164139', 'gene': 12835, 'sample_id': 'SAMN01164139', 'source_name': 'CNS E18', 'var': 0.0, 'full_rpkm': 3.16354, 'exp_rpkm': 3.16, 'exp_total': 2520368, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605340}, 'CNS E14': {'id': '12835_SAMN01164138', 'gene': 12835, 'sample_id': 'SAMN01164138', 'source_name': 'CNS E14', 'var': 0.0, 'full_rpkm': 7.25629, 'exp_rpkm': 7.26, 'exp_total': 5960454, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605341}, 'limb E14.5': {'id': '12835_SAMN01164137', 'gene': 12835, 'sample_id': 'SAMN01164137', 'source_name': 'limb E14.5', 'var': 0.0, 'full_rpkm': 62.3315, 'exp_rpkm': 62.3, 'exp_total': 46033894, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605342}, 'cerebellum adult': {'id': '12835_SAMN01164136', 'gene': 12835, 'sample_id': 'SAMN01164136', 'source_name': 'cerebellum adult', 'var': 0.0, 'full_rpkm': 0.261921, 'exp_rpkm': 0.262, 'exp_total': 150535, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605343}, 'liver E18': {'id': '12835_SAMN01164135', 'gene': 12835, 'sample_id': 'SAMN01164135', 'source_name': 'liver E18', 'var': 0.0, 'full_rpkm': 1.51068, 'exp_rpkm': 1.51, 'exp_total': 1405592, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605344}, 'placenta adult': {'id': '12835_SAMN01164134', 'gene': 12835, 'sample_id': 'SAMN01164134', 'source_name': 'placenta adult', 'var': 0.0, 'full_rpkm': 14.8217, 'exp_rpkm': 14.8, 'exp_total': 15345003, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605345}, 'bladder adult': {'id': '12835_SAMN01164133', 'gene': 12835, 'sample_id': 'SAMN01164133', 'source_name': 'bladder adult', 'var': 0.0, 'full_rpkm': 39.071, 'exp_rpkm': 39.1, 'exp_total': 25824724, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605346}, 'cortex adult': {'id': '12835_SAMN01164132', 'gene': 12835, 'sample_id': 'SAMN01164132', 'source_name': 'cortex adult', 'var': 0.0, 'full_rpkm': 0.16689, 'exp_rpkm': 0.167, 'exp_total': 107415, 'project_desc': 'PRJNA66167', '_version_': 1785731961886605347}, 'frontal Lobe adult': {'id': '12835_SAMN01164131', 'gene': 12835, 'sample_id': 'SAMN01164131', 'source_name': 'frontal Lobe adult', 'var': 0.0, 'full_rpkm': 0.322496, 'exp_rpkm': 0.322, 'exp_total': 216798, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653888}, 'heart adult': {'id': '12835_SAMN00849390', 'gene': 12835, 'sample_id': 'SAMN00849390', 'source_name': 'heart adult', 'var': 0.0, 'full_rpkm': 4.35136, 'exp_rpkm': 4.35, 'exp_total': 1085582, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653889}, 'colon adult': {'id': '12835_SAMN00849389', 'gene': 12835, 'sample_id': 'SAMN00849389', 'source_name': 'colon adult', 'var': 0.0, 'full_rpkm': 16.9097, 'exp_rpkm': 16.9, 'exp_total': 3882424, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653890}, 'spleen adult': {'id': '12835_SAMN00849388', 'gene': 12835, 'sample_id': 'SAMN00849388', 'source_name': 'spleen adult', 'var': 0.0, 'full_rpkm': 2.32892, 'exp_rpkm': 2.33, 'exp_total': 692788, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653891}, 'lung adult': {'id': '12835_SAMN00849387', 'gene': 12835, 'sample_id': 'SAMN00849387', 'source_name': 'lung adult', 'var': 0.0, 'full_rpkm': 23.2565, 'exp_rpkm': 23.3, 'exp_total': 5174419, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653892}, 'liver adult': {'id': '12835_SAMN00849386', 'gene': 12835, 'sample_id': 'SAMN00849386', 'source_name': 'liver adult', 'var': 0.0, 'full_rpkm': 0.607633, 'exp_rpkm': 0.608, 'exp_total': 192332, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653893}, 'kidney adult': {'id': '12835_SAMN00849385', 'gene': 12835, 'sample_id': 'SAMN00849385', 'source_name': 'kidney adult', 'var': 0.0, 'full_rpkm': 4.81833, 'exp_rpkm': 4.82, 'exp_total': 1715545, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653894}, 'testis adult': {'id': '12835_SAMN00849384', 'gene': 12835, 'sample_id': 'SAMN00849384', 'source_name': 'testis adult', 'var': 0.0, 'full_rpkm': 1.45405, 'exp_rpkm': 1.45, 'exp_total': 372585, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653895}, 'thymus adult': {'id': '12835_SAMN00849383', 'gene': 12835, 'sample_id': 'SAMN00849383', 'source_name': 'thymus adult', 'var': 0.0, 'full_rpkm': 1.83569, 'exp_rpkm': 1.84, 'exp_total': 592255, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653896}, 'subcutaneous fat pad adult': {'id': '12835_SAMN00849382', 'gene': 12835, 'sample_id': 'SAMN00849382', 'source_name': 'subcutaneous fat pad adult', 'var': 0.0, 'full_rpkm': 60.8984, 'exp_rpkm': 60.9, 'exp_total': 16422572, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653897}, 'genital fat pad adult': {'id': '12835_SAMN00849381', 'gene': 12835, 'sample_id': 'SAMN00849381', 'source_name': 'genital fat pad adult', 'var': 0.0, 'full_rpkm': 17.9434, 'exp_rpkm': 17.9, 'exp_total': 4830798, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653898}, 'Large Intestine adult': {'id': '12835_SAMN00849380', 'gene': 12835, 'sample_id': 'SAMN00849380', 'source_name': 'Large Intestine adult', 'var': 0.0, 'full_rpkm': 6.98727, 'exp_rpkm': 6.99, 'exp_total': 1880407, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653899}, 'adrenal adult': {'id': '12835_SAMN00849379', 'gene': 12835, 'sample_id': 'SAMN00849379', 'source_name': 'adrenal adult', 'var': 0.0, 'full_rpkm': 4.86452, 'exp_rpkm': 4.86, 'exp_total': 1189665, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653900}, 'duodenum adult': {'id': '12835_SAMN00849378', 'gene': 12835, 'sample_id': 'SAMN00849378', 'source_name': 'duodenum adult', 'var': 0.0, 'full_rpkm': 6.3135, 'exp_rpkm': 6.31, 'exp_total': 1536495, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653901}, 'small intestine adult': {'id': '12835_SAMN00849377', 'gene': 12835, 'sample_id': 'SAMN00849377', 'source_name': 'small intestine adult', 'var': 0.0, 'full_rpkm': 6.06437, 'exp_rpkm': 6.06, 'exp_total': 1503218, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653902}, 'stomach adult': {'id': '12835_SAMN00849376', 'gene': 12835, 'sample_id': 'SAMN00849376', 'source_name': 'stomach adult', 'var': 0.0, 'full_rpkm': 7.18519, 'exp_rpkm': 7.19, 'exp_total': 2028231, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653903}, 'mammary gland adult': {'id': '12835_SAMN00849375', 'gene': 12835, 'sample_id': 'SAMN00849375', 'source_name': 'mammary gland adult', 'var': 0.0, 'full_rpkm': 31.4896, 'exp_rpkm': 31.5, 'exp_total': 7412981, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653904}, 'ovary adult': {'id': '12835_SAMN00849374', 'gene': 12835, 'sample_id': 'SAMN00849374', 'source_name': 'ovary adult', 'var': 0.0, 'full_rpkm': 48.2624, 'exp_rpkm': 48.3, 'exp_total': 8849862, 'project_desc': 'PRJNA66167', '_version_': 1785731961887653905}};
|
||
|
||
|
||
|
||
|
||
window.details_data = {"CNS E11.5": [{"id": "metadata_10090_SAMN01164142", "gene": 12835, "sample_id": "SAMN01164142", "source_name": "CNS E11.5", "var": 0.0, "full_rpkm": 3.0409, "exp_rpkm": 3.04, "exp_total": 2475784, "project_desc": "PRJNA66167", "_version_": 1785731958042525696, "is_metadata": true, "is_sample": true, "taxid": 10090, "exp_Mcount": 75100.3}], "CNS E14": [{"id": "metadata_10090_SAMN01164138", "gene": 12835, "sample_id": "SAMN01164138", "source_name": "CNS E14", "var": 0.0, "full_rpkm": 7.25629, "exp_rpkm": 7.26, "exp_total": 5960454, "project_desc": "PRJNA66167", "_version_": 1785731958050914304, "is_metadata": true, "is_sample": true, "taxid": 10090, "exp_Mcount": 75769.7}], "CNS E18": [{"id": "metadata_10090_SAMN01164139", "gene": 12835, "sample_id": "SAMN01164139", "source_name": "CNS E18", "var": 0.0, "full_rpkm": 3.16354, "exp_rpkm": 3.16, "exp_total": 2520368, "project_desc": "PRJNA66167", "_version_": 1785731958048817152, "is_metadata": true, "is_sample": true, "taxid": 10090, "exp_Mcount": 73488.9}], "Large Intestine adult": [{"id": "metadata_10090_SAMN00849380", "gene": 12835, "sample_id": "SAMN00849380", "source_name": "Large Intestine adult", "var": 0.0, "full_rpkm": 6.98727, "exp_rpkm": 6.99, "exp_total": 1880407, "project_desc": "PRJNA66167", "_version_": 1785731958084468736, "is_metadata": true, "is_sample": true, "taxid": 10090, "exp_Mcount": 24824.2}], "adrenal adult": [{"id": "metadata_10090_SAMN00849379", "gene": 12835, "sample_id": "SAMN00849379", "source_name": "adrenal adult", "var": 0.0, "full_rpkm": 4.86452, "exp_rpkm": 4.86, "exp_total": 1189665, "project_desc": "PRJNA66167", "_version_": 1785731958086565888, "is_metadata": true, "is_sample": true, "taxid": 10090, "exp_Mcount": 22558.8}], "bladder adult": [{"id": "metadata_10090_SAMN01164133", "gene": 12835, "sample_id": "SAMN01164133", "source_name": "bladder adult", "var": 0.0, "full_rpkm": 39.071, "exp_rpkm": 39.1, "exp_total": 25824724, "project_desc": "PRJNA66167", "_version_": 1785731958061400064, "is_metadata": true, "is_sample": true, "taxid": 10090, "exp_Mcount": 60969.5}], "cerebellum adult": [{"id": "metadata_10090_SAMN01164136", "gene": 12835, "sample_id": "SAMN01164136", "source_name": "cerebellum adult", "var": 0.0, "full_rpkm": 0.261921, "exp_rpkm": 0.262, "exp_total": 150535, "project_desc": "PRJNA66167", "_version_": 1785731958055108608, "is_metadata": true, "is_sample": true, "taxid": 10090, "exp_Mcount": 53014.9}], "colon adult": [{"id": "metadata_10090_SAMN00849389", "gene": 12835, "sample_id": "SAMN00849389", "source_name": "colon adult", "var": 0.0, "full_rpkm": 16.9097, "exp_rpkm": 16.9, "exp_total": 3882424, "project_desc": "PRJNA66167", "_version_": 1785731958068740096, "is_metadata": true, "is_sample": true, "taxid": 10090, "exp_Mcount": 21178.6}], "cortex adult": [{"id": "metadata_10090_SAMN01164132", "gene": 12835, "sample_id": "SAMN01164132", "source_name": "cortex adult", "var": 0.0, "full_rpkm": 0.16689, "exp_rpkm": 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|
||
window.taxId = 10090
|
||
</script>
|
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||
|
||
<div>
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||
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||
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||
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||
<select name="p" id="project-selector">
|
||
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||
|
||
<option value="iSRP012040" selected="selected" data-bioproject="PRJNA66167">
|
||
|
||
Mouse ENCODE transcriptome data
|
||
|
||
</option>
|
||
|
||
|
||
|
||
</select>
|
||
|
||
|
||
|
||
<ul id="project-summary">
|
||
<li id="project-summary-title">Project title:
|
||
|
||
Mouse ENCODE transcriptome data
|
||
|
||
</li>
|
||
|
||
|
||
<li id="project-summary-desc">Description: RNA profiling data sets generated by the Mouse ENCODE project.</li>
|
||
|
||
|
||
|
||
<li id="project-summary-bioprojects">BioProject: <a href="/bioproject/PRJNA66167/">PRJNA66167</a>
|
||
</li>
|
||
|
||
<li id="project-summary-pubs">Publication:
|
||
|
||
|
||
<span><a href="/pubmed/25409824/">PMID 25409824</a></span>
|
||
|
||
</li>
|
||
|
||
|
||
<li id="project-summary-analysis-date">Analysis date: n/a</li>
|
||
|
||
</ul>
|
||
|
||
|
||
|
||
<div id="gene-expr-details" class="expression-chart"></div>
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
<script type="text/javascript" src="https://www.gstatic.com/charts/loader.js"></script>
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<script type="text/javascript">
|
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google.charts.load('current', {
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'packages':[ 'corechart']
|
||
});
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|
||
</script>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-bibliography">
|
||
<section class="rprt-section-header" id="bibliography"><h2 id="header-bibliography"><a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-bibliography .rprt-section-body'"><span class="ui-ncbitoggler-master-text">Bibliography</span></a></h2><div class="rprt-section-tools"><a href="#top" title="Go to the top of the page" class="gene-top-page"><span>Go to the top of the page</span></a><a href="/books/NBK3841/#EntrezGene.Bibliography" title="Help" class="gene-section-help"><span>Help</span></a></div></section>
|
||
<div class="rprt-section-body" style="">
|
||
<div class="generif-pubmed">
|
||
<h3 id="relatedarticlesinpubmed">
|
||
<a href="#" class="jig-ncbitoggler-open">Related articles in PubMed</a>
|
||
</h3>
|
||
<div class="generefbl-link">
|
||
<ol class="generef-link">
|
||
<li>
|
||
<a href="/pubmed/23564457/" ref="ordinalpos=1&ncbi_uid=12835&link_uid=23564457">COL6A3 protein deficiency in mice leads to muscle and tendon defects similar to human collagen VI congenital muscular dystrophy.</a>
|
||
<span class="pubmed-auth-date"> Pan TC, <em>et al</em>. J Biol Chem, 2013 May 17. PMID 23564457, <span class="pubmed-pmc-link"><a href="/pmc/articles/PMC3656288/" ref="ordinalpos=0&ncbi_uid=12835&link_uid=PMC3656288">Free PMC Article</a></span></span>
|
||
</li>
|
||
<li>
|
||
<a href="/pubmed/34965974/" ref="ordinalpos=2&ncbi_uid=12835&link_uid=34965974">Collagen VI Regulates Motor Circuit Plasticity and Motor Performance by Cannabinoid Modulation.</a>
|
||
<span class="pubmed-auth-date"> Lam DD, <em>et al</em>. J Neurosci, 2022 Feb 23. PMID 34965974, <span class="pubmed-pmc-link"><a href="/pmc/articles/PMC8883874/" ref="ordinalpos=0&ncbi_uid=12835&link_uid=PMC8883874">Free PMC Article</a></span></span>
|
||
</li>
|
||
<li>
|
||
<a href="/pubmed/12009329/" ref="ordinalpos=3&ncbi_uid=12835&link_uid=12009329">Alternative splicing of transcripts for the alpha 3 chain of mouse collagen VI: identification of an abundant isoform lacking domains N7-N10 in mouse and human.</a>
|
||
<span class="pubmed-auth-date"> Dziadek M, <em>et al</em>. Matrix Biol, 2002 Apr. PMID 12009329</span>
|
||
</li>
|
||
<li>
|
||
<a href="/pubmed/33110211/" ref="ordinalpos=4&ncbi_uid=12835&link_uid=33110211">The impact of endotrophin on the progression of chronic liver disease.</a>
|
||
<span class="pubmed-auth-date"> Kim M, <em>et al</em>. Exp Mol Med, 2020 Oct. PMID 33110211, <span class="pubmed-pmc-link"><a href="/pmc/articles/PMC8080612/" ref="ordinalpos=0&ncbi_uid=12835&link_uid=PMC8080612">Free PMC Article</a></span></span>
|
||
</li>
|
||
<li>
|
||
<a href="/pubmed/30246318/" ref="ordinalpos=5&ncbi_uid=12835&link_uid=30246318">COL6A3-derived endotrophin links reciprocal interactions among hepatic cells in the pathology of chronic liver disease.</a>
|
||
<span class="pubmed-auth-date"> Lee C, <em>et al</em>. J Pathol, 2019 Jan. PMID 30246318</span>
|
||
</li>
|
||
</ol>
|
||
<p class="see-all-pm">
|
||
<a href="/pubmed?LinkName=gene_pubmed&from_uid=12835" title="See all 66 citations in Pubmed">See all (66) citations in PubMed</a>
|
||
</p>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="generif-pubmed generif">
|
||
<h3 id="generifsgenereferencesintofunctions">
|
||
<a href="#" class="jig-ncbitoggler-open">GeneRIFs: Gene References Into Functions</a>
|
||
</h3>
|
||
<div>
|
||
<a href="/gene/about-generif" class="whatisthis">What's a GeneRIF?</a>
|
||
<div class="generefbl-link">
|
||
<ol class="generef-link">
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/33110211" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=12835&link_uid=33110211">The impact of endotrophin on the progression of chronic liver disease.</a>
|
||
<div id="gene-popper1" class="gene-rif-popper">Title: The impact of endotrophin on the progression of chronic liver disease.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/30635602" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=12835&link_uid=30635602">In temporomandibular joint osteoarthritis, membrane-bound NG2 is found to colocalize with pericellular type VI collagen in superficial layer cells in the mandibular condylar cartilage perichondrium but is present at high levels in the cytosol of chondroblastic and hypertrophic cells.</a>
|
||
<div id="gene-popper2" class="gene-rif-popper">Title: Neuron/Glial Antigen 2-Type VI Collagen Interactions During Murine Temporomandibular Joint Osteoarthritis.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/30246318" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=12835&link_uid=30246318">COL6A3-derived endotrophin is a crucial mediator in reciprocal interactions among various hepatic cell populations in the pathogenesis of chronic liver disease.</a>
|
||
<div id="gene-popper3" class="gene-rif-popper">Title: COL6A3-derived endotrophin links reciprocal interactions among hepatic cells in the pathology of chronic liver disease.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/27729337" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=12835&link_uid=27729337">Overexpression of endotrophin caused upregulation of adipogenic genes in the white adipose tissue(WAT) of endotrophin transgenic mice. The mice exhibited inhibited lipolysis and accelerated hypertrophy and hyperplasia in WAT.</a>
|
||
<div id="gene-popper4" class="gene-rif-popper">Title: Divergent functions of endotrophin on different cell populations in adipose tissue.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/24647224" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=12835&link_uid=24647224">Data indicate that overexpression of endotrophin (COL6alpha3) locally in adipose tissue promotes metabolic dysfunction under a high-fat diet (HFD) challenge.</a>
|
||
<div id="gene-popper5" class="gene-rif-popper">Title: Endotrophin triggers adipose tissue fibrosis and metabolic dysfunction.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/24498316" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=12835&link_uid=24498316">Data show that the TFIID subunit TAF4 is essential to restrain the growth promoting properties of collagen 6A3 (Col6a3).</a>
|
||
<div id="gene-popper6" class="gene-rif-popper">Title: TAF4 inactivation reveals the 3 dimensional growth promoting activities of collagen 6A3.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/23564457" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=12835&link_uid=23564457">mice lacking normal alpha3(VI) collagen chains display mild musculoskeletal phenotypes similar to mice deficient in the alpha1(VI) collagen alpha chain, suggesting that alpha3(VI) collagen does not elicit essential functions in normal growth and development</a>
|
||
<div id="gene-popper7" class="gene-rif-popper">Title: COL6A3 protein deficiency in mice leads to muscle and tendon defects similar to human collagen VI congenital muscular dystrophy.</div>
|
||
</li>
|
||
<li class="gene-rif-popper">
|
||
<a href="/pubmed/18276594" target="_blank" class="gene-rif-popper" ref="ordinalpos=1&ncbi_uid=12835&link_uid=18276594">analysis of collagen VI chains alpha4, alpha5, and alpha6with high homology to the alpha3 chain</a>
|
||
<div id="gene-popper8" class="gene-rif-popper">Title: Three novel collagen VI chains with high homology to the alpha3 chain.</div>
|
||
</li>
|
||
</ol>
|
||
</div>
|
||
<div class="submit-genrif">
|
||
<span>Submit:</span>
|
||
<a href="/gene/submit-generif/?geneId=12835&sym=Col6a3&name=collagen, type VI, alpha 3&org=Mus musculus">New GeneRIF</a>
|
||
<a href="/RefSeq/update.cgi?geneid=12835&symbol=Col6a3;task=fixpub">Correction</a>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-variation">
|
||
<section class="rprt-section-header" id="variation">
|
||
<h2 id="header-variation">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-variation .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Variation</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.variation" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div class="infosec alleles-subsec">
|
||
<h3 id="alleles">
|
||
<a class="jig-ncbitoggler-open">Alleles</a>
|
||
</h3>
|
||
<div class="geneinfo-subsec">
|
||
<div>Alleles of this type are documented at Mouse Genome Informatics <a title="" href="http://www.informatics.jax.org/allele/summary?markerId=MGI:88461">(MGI)</a></div>
|
||
<ul class="geneinfo-subsec">
|
||
<li>Endonuclease-mediated (8)
|
||
<a title="PubMed ID 34965974" href="/pubmed/34965974">1 citation</a></li>
|
||
<li>Targeted (2)
|
||
<a title="PubMed ID 23564457,24563484" href="/pubmed/23564457,24563484">1 citation</a></li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
<set></set>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
|
||
|
||
<div class="rprt-section gene-interactions">
|
||
<section class="rprt-section-header" id="interactions">
|
||
<h2 id="header-interactions">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-interactions .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Interactions</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Interactions" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<table summary="Gene Interaction" class="jig-ncbiservergrid" data-jigconfig="webservice:'/gene/12835/data/interaction/',webserviceParams: 'p$l=Ajax&p$debugoutput=off', isServersideLoad:true, isServersidePaging: true,isServersidePagingCached: true,pageSize:25">
|
||
<thead>
|
||
<tr>
|
||
<th id="inter-prod">Products</th>
|
||
<th id="inter-interactant">Interactant</th>
|
||
<th id="inter-otherGene">Other Gene</th>
|
||
<th id="inter-compl">Complex</th>
|
||
<th id="inter-source">Source</th>
|
||
<th id="inter-pubs">Pubs</th>
|
||
<th id="inter-desc">Description</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody></tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-general-gene-info">
|
||
<section class="rprt-section-header" id="general-gene-info">
|
||
<h2 id="header-general-gene-info">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-general-gene-info .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">General gene information</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.General_Gene_Information" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
|
||
<div class="rprt-section-body" style="">
|
||
<div id="gene-markers">
|
||
<h3 id="markers">
|
||
<a class="jig-ncbitoggler">Markers</a>
|
||
</h3>
|
||
<div>
|
||
<ul class="marker odd">
|
||
<li class="marker">AI507288 (e-PCR)<ul class="marker-link"><li><a href="https://www.ncbi.nlm.nih.gov/probe?term=178436%20%5BUniSTS%20ID%5D" ref="ordinalpos=1&ncbi_uid=12835&link_uid=178436">UniSTS:178436</a></li></ul></li>
|
||
</ul>
|
||
<ul class="marker ">
|
||
<li class="marker">AI042932 (e-PCR)<ul class="marker-link"><li><a href="https://www.ncbi.nlm.nih.gov/probe?term=178439%20%5BUniSTS%20ID%5D" ref="ordinalpos=1&ncbi_uid=12835&link_uid=178439">UniSTS:178439</a></li></ul></li>
|
||
</ul>
|
||
<ul class="marker odd">
|
||
<li class="marker">01.MMHAP90FLA1.seq (e-PCR)<ul class="marker-link"><li><a href="https://www.ncbi.nlm.nih.gov/probe?term=122678%20%5BUniSTS%20ID%5D" ref="ordinalpos=1&ncbi_uid=12835&link_uid=122678">UniSTS:122678</a></li></ul></li>
|
||
</ul>
|
||
<ul class="marker ">
|
||
<li class="marker">AF064749 (e-PCR)<ul class="marker-link"><li><a href="https://www.ncbi.nlm.nih.gov/probe?term=158827%20%5BUniSTS%20ID%5D" ref="ordinalpos=1&ncbi_uid=12835&link_uid=158827">UniSTS:158827</a></li></ul></li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div></div>
|
||
|
||
<div class="infosec">
|
||
<h3 id="homology">
|
||
<a class="jig-ncbitoggler-open">Homology</a>
|
||
</h3>
|
||
<ul class="geneinfo-subsec">
|
||
<li>
|
||
<a href="/gene/12835/ortholog/" id="ncbi-ortholog-link">NCBI Orthologs</a>
|
||
</li>
|
||
<a href="https://www.orthodb.org/?ncbi=12835" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=8178" target="_blank">
|
||
Orthologs from OrthoDB
|
||
</a>
|
||
</ul>
|
||
</div>
|
||
|
||
<!--<component id="Gene_InfoPathway"/>-->
|
||
|
||
|
||
<div class="gene-ontology infosec">
|
||
<h3 id="gene-ontology">
|
||
<a class="jig-ncbitoggler-open">
|
||
<span>Gene Ontology</span>
|
||
</a>
|
||
<a target="_blank" href="http://www.informatics.jax.org" class="g-ontology-src" title="Provided by MGI">Provided by MGI</a>
|
||
</h3>
|
||
<div class="ontology-tables">
|
||
<div class="ui-ncbigrid-outer-div">
|
||
<div class="ui-ncbigrid-inner-div">
|
||
<table class="jig-ncbigrid" data-jigconfig="isPageable: true, pageSize : 25, isSortable: true, columnTypes: ['str', 'str', 'str']">
|
||
<thead>
|
||
<tr>
|
||
<th class="col1">Function</th>
|
||
<th style="width:12%;">Evidence Code</th>
|
||
<th style="width:10%;">Pubs</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr>
|
||
<td headers="ont-func">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0030020">enables extracellular matrix structural constituent conferring tensile strength</a>
|
||
</td>
|
||
<td headers="ont-evi- ont-evi-code-">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-1-0', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> RCA</a>
|
||
<div id="evidence-code-1-0" class="ecode">inferred from Reviewed Computational Analysis<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi- ont-pub-"><a href="/pubmed/28071719" target="_blank" title="PubMed ID 28071719" ref="ordinalpos=1&ncbi_uid=12835&link_uid=28071719">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-func">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0004867">enables serine-type endopeptidase inhibitor activity</a>
|
||
</td>
|
||
<td headers="ont-evi- ont-evi-code-">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-2-0', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IEA</a>
|
||
<div id="evidence-code-2-0" class="ecode">Inferred from Electronic Annotation<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi- ont-pub-"> </td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
<div class="ui-ncbigrid-outer-div">
|
||
<div class="ui-ncbigrid-inner-div">
|
||
<table class="jig-ncbigrid" data-jigconfig="isPageable: true, pageSize : 25, isSortable: true, columnTypes: ['str', 'str', 'str']">
|
||
<thead>
|
||
<tr>
|
||
<th class="col1">Process</th>
|
||
<th style="width:12%;">Evidence Code</th>
|
||
<th style="width:10%;">Pubs</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0007155">involved_in cell adhesion</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-1-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IEA</a>
|
||
<div id="evidence-code-1-1" class="ecode">Inferred from Electronic Annotation<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0051402">acts_upstream_of_or_within neuron apoptotic process</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-2-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-2-1" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/21459131" target="_blank" title="PubMed ID 21459131" ref="ordinalpos=1&ncbi_uid=12835&link_uid=21459131">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0043491">acts_upstream_of_or_within phosphatidylinositol 3-kinase/protein kinase B signal transduction</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-3-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-3-1" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/21459131" target="_blank" title="PubMed ID 21459131" ref="ordinalpos=1&ncbi_uid=12835&link_uid=21459131">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-comp">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0009411">acts_upstream_of_or_within response to UV</a>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-evi-code-2">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-4-1', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-4-1" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-2 ont-pub-2"><a href="/pubmed/21459131" target="_blank" title="PubMed ID 21459131" ref="ordinalpos=1&ncbi_uid=12835&link_uid=21459131">PubMed</a> </td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
<div class="ui-ncbigrid-outer-div">
|
||
<div class="ui-ncbigrid-inner-div">
|
||
<table class="jig-ncbigrid" data-config="isPageable: true, pageSize : 25, isSortable: true, columnTypes: ['str', 'str', 'str']">
|
||
<thead>
|
||
<tr>
|
||
<th class="col1">Component</th>
|
||
<th style="width:12%;">Evidence Code</th>
|
||
<th style="width:10%;">Pubs</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005604">located_in basement membrane</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-1-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IEA</a>
|
||
<div id="evidence-code-1-2" class="ecode">Inferred from Electronic Annotation<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005581">part_of collagen trimer</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-2-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-2-2" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/24563484" target="_blank" title="PubMed ID 24563484" ref="ordinalpos=1&ncbi_uid=12835&link_uid=24563484">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0062023">located_in collagen-containing extracellular matrix</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-3-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> HDA</a>
|
||
<div id="evidence-code-3-2" class="ecode">
|
||
<br />
|
||
<a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a>
|
||
</div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/28071719" target="_blank" title="PubMed ID 28071719" ref="ordinalpos=1&ncbi_uid=12835&link_uid=28071719">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0031012">located_in extracellular matrix</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-4-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-4-2" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/8806434,16810681" target="_blank" title="PubMed ID 8806434,16810681" ref="ordinalpos=1&ncbi_uid=12835&link_uid=8806434,16810681">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0031012">located_in extracellular matrix</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-5-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> ISO</a>
|
||
<div id="evidence-code-5-2" class="ecode">Inferred from Sequence Orthology<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/18400749" target="_blank" title="PubMed ID 18400749" ref="ordinalpos=1&ncbi_uid=12835&link_uid=18400749">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005615">is_active_in extracellular space</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-6-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IBA</a>
|
||
<div id="evidence-code-6-2" class="ecode">Inferred from Biological aspect of Ancestor<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0005615">located_in extracellular space</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-7-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-7-2" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/10444069" target="_blank" title="PubMed ID 10444069" ref="ordinalpos=1&ncbi_uid=12835&link_uid=10444069">PubMed</a> </td>
|
||
</tr>
|
||
<tr>
|
||
<td headers="ont-proc">
|
||
<a href="http://amigo.geneontology.org/amigo/term/GO:0042383">located_in sarcolemma</a>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-evi-code-3">
|
||
<a class="jig-ncbipopper" href="http://geneontology.org/docs/guide-go-evidence-codes/" data-jigconfig="destSelector: '#evidence-code-8-2', hasArrow: true, openAnimation: 'none', closeAnimation: 'none', adjustFit: 'autoAdjust', triggerPosition: 'center right', destPosition: 'center left'"> IDA</a>
|
||
<div id="evidence-code-8-2" class="ecode">Inferred from Direct Assay<br /><a href="http://geneontology.org/docs/guide-go-evidence-codes/">more info</a></div>
|
||
</td>
|
||
<td headers="ont-evi-3 ont-pub-3"><a href="/pubmed/16810681" target="_blank" title="PubMed ID 16810681" ref="ordinalpos=1&ncbi_uid=12835&link_uid=16810681">PubMed</a> </td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
|
||
<div class="rprt-section gene-general-protein-info">
|
||
<section class="rprt-section-header" id="general-protein-info">
|
||
<h2 id="header-general-protein-info">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-general-protein-info .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">General protein information</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.General_Protein_Information" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<dl>
|
||
<dt>Preferred Names</dt>
|
||
<dd>collagen alpha-3(VI) chain</dd>
|
||
</dl>
|
||
<dl>
|
||
<dt>Names</dt>
|
||
<dd>collagen alpha 3 chain type VI</dd>
|
||
<dd>collagen alpha3(VI)</dd>
|
||
<dd>procollagen, type VI, alpha 3</dd>
|
||
<dd>type VI collagen alpha 3 subunit</dd>
|
||
</dl>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="rprt-section gene-reference-sequences">
|
||
<section class="rprt-section-header" id="reference-sequences">
|
||
<h2 id="header-reference-sequences">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-reference-sequences .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">NCBI Reference Sequences (RefSeq)</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.NCBI_Reference_Sequences_RefS" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<p>
|
||
<span class="new-icon">NEW</span>
|
||
<strong>Try the new <a href="/datasets/tables/genes/?table_type=transcripts&ids=12835&utm_source=gene&utm_medium=referral&utm_campaign=refseq" title="View selected attributes for an input list of genes and download datasets containing genomic, transcript and protein sequences along with a detailed data report." data-ga-category="refseq" data-ga-action="click_datasets_link" data-ga-label="transcript_table">Transcript table</a></strong>
|
||
</p>
|
||
<h3 class="genomerefseqs gene_std_toggler" id="refseqset-independent">
|
||
<a class="jig-ncbitoggler-open">RefSeqs maintained independently of Annotated
|
||
Genomes</a>
|
||
</h3>
|
||
<div class="genomerefseqs_slave">
|
||
<p class="desc"> These reference sequences exist independently of genome builds. <a href="#refseq-expl" id="expl-refseg">Explain</a></p>
|
||
<p id="refseq-expl"> These reference sequences are curated independently of the genome
|
||
annotation cycle, so their versions may not match the RefSeq versions in the current
|
||
genome build. Identify version mismatches by comparing the version of the RefSeq in
|
||
this section to the one reported in <a href="#geneGenomic regions, transcripts, and products">Genomic regions,
|
||
transcripts, and products</a> above. </p>
|
||
<h4 id="mrnaandproteins-p146896144">mRNA and Protein(s) </h4>
|
||
<ol>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001243008.1">NM_001243008.1</a> → <a href="/protein/NP_001229937.1">NP_001229937.1</a> collagen alpha-3(VI) chain isoform 1 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (1) encodes the longer isoform (1).</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AA118378, AC110895, AC158773, AF034136, AK076391, BQ560536, BQ561449, BX638221, CF734596, CJ098732, CN667533, FQ976558">AA118378, AC110895, AC158773, AF034136, AK076391, BQ560536, BQ561449, BX638221, CF734596, CJ098732, CN667533, FQ976558</a>
|
||
</dd>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/E9PWQ3" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">E9PWQ3</a>
|
||
</dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000057131.10" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">ENSMUSP00000057131.10</a>, <a href="http://www.ensembl.org/id/ENSMUST00000056925.16" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">ENSMUST00000056925.16</a></dd>
|
||
<dt class="clear"> Conserved Domains (7) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001229937.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=189968">pfam01391</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2305</span> → <span class="cddto">2362</span></dt>
|
||
<dd class="clearfix"> Collagen; Collagen triple helix repeat (20 copies)</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=214621">smart00327</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1836</span> → <span class="cddto">1991</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor (vWF) type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=238758">cd01481</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1432</span> → <span class="cddto">1596</span></dt>
|
||
<dd class="clearfix"> vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=278443">pfam00014</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">3227</span> → <span class="cddto">3278</span></dt>
|
||
<dd class="clearfix"> Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=278470">pfam00041</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">3109</span> → <span class="cddto">3177</span></dt>
|
||
<dd class="clearfix"> fn3; Fibronectin type III domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=278519">pfam00092</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1636</span> → <span class="cddto">1807</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=294047">cl00057</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">443</span> → <span class="cddto">607</span></dt>
|
||
<dd class="clearfix"> vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/NM_001243009.1">NM_001243009.1</a> → <a href="/protein/NP_001229938.1">NP_001229938.1</a> collagen alpha-3(VI) chain isoform 2 precursor</p>
|
||
<p style="background:#fff; margin-top:1em;">Status: VALIDATED</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>Transcript Variant: This variant (2) lacks 3 non-consecutive in-frame coding exons compared to variant 1. This results in a shorter isoform (2) missing two internal protein segments compared to isoform 1.</dd>
|
||
<dt>Source sequence(s)</dt>
|
||
<dd class="wordwrap">
|
||
<a href="/nuccore/AA118378, AC110895, AC158773, AK076391, BQ560536, BQ561449, BX638221, CF734596, CJ098732, FQ976558">AA118378, AC110895, AC158773, AK076391, BQ560536, BQ561449, BX638221, CF734596, CJ098732, FQ976558</a>
|
||
</dd>
|
||
<dt>Consensus CDS</dt>
|
||
<dd>
|
||
<a href="/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS56640.1">CCDS56640.1</a>
|
||
</dd>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd><a href="https://www.uniprot.org/uniprot/A0A087WS16" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">A0A087WS16</a>, <a href="https://www.uniprot.org/uniprot/J3QQ16" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">J3QQ16</a></dd>
|
||
<dt>Related</dt>
|
||
<dd><a href="http://www.ensembl.org/id/ENSMUSP00000137585.2" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">ENSMUSP00000137585.2</a>, <a href="http://www.ensembl.org/id/ENSMUST00000097653.11" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">ENSMUST00000097653.11</a></dd>
|
||
<dt class="clear"> Conserved Domains (7) <a href="/Structure/cdd/wrpsb.cgi?seqinput=NP_001229938.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=189968">pfam01391</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1698</span> → <span class="cddto">1755</span></dt>
|
||
<dd class="clearfix"> Collagen; Collagen triple helix repeat (20 copies)</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=214621">smart00327</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1229</span> → <span class="cddto">1384</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor (vWF) type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=238758">cd01481</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">825</span> → <span class="cddto">989</span></dt>
|
||
<dd class="clearfix"> vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=278443">pfam00014</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2620</span> → <span class="cddto">2671</span></dt>
|
||
<dd class="clearfix"> Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=278470">pfam00041</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2502</span> → <span class="cddto">2570</span></dt>
|
||
<dd class="clearfix"> fn3; Fibronectin type III domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=278519">pfam00092</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1029</span> → <span class="cddto">1200</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=294047">cl00057</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">36</span> → <span class="cddto">200</span></dt>
|
||
<dd class="clearfix"> vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
</ol>
|
||
</div>
|
||
<h3 class="genomerefseqs gene_std_toggler" id="annotatedrefseq-title">
|
||
<a class="jig-ncbitoggler-open">RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02</a>
|
||
</h3>
|
||
<div class="genomerefseqs_slave">
|
||
<p class="desc"> The following sections contain reference sequences that belong to a
|
||
specific genome build. <a href="#" id="expl-genomes">Explain</a></p>
|
||
<p id="expl-genomes-desc" style="display:none">This section includes genomic Reference
|
||
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
|
||
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
|
||
assemblies. Model RNAs and proteins are also reported here.</p>
|
||
<h3 id="refseq-sequencedescription-p230353280">Reference GRCm39 C57BL/6J</h3>
|
||
<h4 id="genomic-p230353280">Genomic </h4>
|
||
<ol>
|
||
<li>
|
||
<p>NC_000067.7 Reference GRCm39 C57BL/6J</p>
|
||
<dl>
|
||
<dt>Range</dt>
|
||
<dd class="rs-range">
|
||
<span>90694582..90771710 complement</span>
|
||
</dd>
|
||
<dt>Download</dt>
|
||
<dd><a href="/nuccore/NC_000067.7?from=90694582&to=90771710&report=genbank&strand=true" ref="ordinalpos=1&ncbi_uid=12835&link_uid=NC_000067.7?from=90694582&to=90771710&report=genbank&strand=true">GenBank</a>, <a href="/nuccore/NC_000067.7?from=90694582&to=90771710&report=fasta&strand=true" ref="ordinalpos=1&ncbi_uid=12835&link_uid=NC_000067.7?from=90694582&to=90771710&report=fasta&strand=true">FASTA</a>, <a href="/nuccore/NC_000067.7?from=90683012&to=90783278&report=graph&content=5&strand=true" ref="ordinalpos=1&ncbi_uid=12835&link_uid=NC_000067.7?from=90683012&to=90783278&report=graph&content=5&strand=true">Sequence Viewer (Graphics)</a></dd>
|
||
</dl>
|
||
</li>
|
||
</ol>
|
||
<h4 id="mrnaandproteins-p166605232">mRNA and Protein(s) </h4>
|
||
<ol>
|
||
<li>
|
||
<p><a href="/nuccore/XM_030245436.2">XM_030245436.2</a> → <a href="/protein/XP_030101296.1">XP_030101296.1</a> collagen alpha-3(VI) chain isoform X1</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/E9PWQ3" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">E9PWQ3</a>
|
||
</dd>
|
||
<dt class="clear"> Conserved Domains (7) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_030101296.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=189968">pfam01391</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2105</span> → <span class="cddto">2162</span></dt>
|
||
<dd class="clearfix"> Collagen; Collagen triple helix repeat (20 copies)</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=214621">smart00327</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1636</span> → <span class="cddto">1791</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor (vWF) type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=238758">cd01481</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1232</span> → <span class="cddto">1396</span></dt>
|
||
<dd class="clearfix"> vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=333766">pfam00014</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">3027</span> → <span class="cddto">3078</span></dt>
|
||
<dd class="clearfix"> Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=365830">pfam00041</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2909</span> → <span class="cddto">2977</span></dt>
|
||
<dd class="clearfix"> fn3; Fibronectin type III domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=365868">pfam00092</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1436</span> → <span class="cddto">1607</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=381780">cl00057</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">443</span> → <span class="cddto">607</span></dt>
|
||
<dd class="clearfix"> vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XM_030245437.2">XM_030245437.2</a> → <a href="/protein/XP_030101297.1">XP_030101297.1</a> collagen alpha-3(VI) chain isoform X2</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/E9PWQ3" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">E9PWQ3</a>
|
||
</dd>
|
||
<dt class="clear"> Conserved Domains (7) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_030101297.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=189968">pfam01391</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2096</span> → <span class="cddto">2154</span></dt>
|
||
<dd class="clearfix"> Collagen; Collagen triple helix repeat (20 copies)</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=214621">smart00327</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1630</span> → <span class="cddto">1785</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor (vWF) type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=238758">cd01481</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1226</span> → <span class="cddto">1390</span></dt>
|
||
<dd class="clearfix"> vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=333766">pfam00014</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">3021</span> → <span class="cddto">3072</span></dt>
|
||
<dd class="clearfix"> Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=365830">pfam00041</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2903</span> → <span class="cddto">2971</span></dt>
|
||
<dd class="clearfix"> fn3; Fibronectin type III domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=365868">pfam00092</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1430</span> → <span class="cddto">1601</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=381780">cl00057</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">237</span> → <span class="cddto">401</span></dt>
|
||
<dd class="clearfix"> vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XM_030245438.2">XM_030245438.2</a> → <a href="/protein/XP_030101298.1">XP_030101298.1</a> collagen alpha-3(VI) chain isoform X3</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A087WS16" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">A0A087WS16</a>
|
||
</dd>
|
||
<dt class="clear"> Conserved Domains (7) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_030101298.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=189968">pfam01391</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1895</span> → <span class="cddto">1953</span></dt>
|
||
<dd class="clearfix"> Collagen; Collagen triple helix repeat (20 copies)</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=214621">smart00327</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1429</span> → <span class="cddto">1584</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor (vWF) type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=238758">cd01481</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1025</span> → <span class="cddto">1189</span></dt>
|
||
<dd class="clearfix"> vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=333766">pfam00014</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2820</span> → <span class="cddto">2871</span></dt>
|
||
<dd class="clearfix"> Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=365830">pfam00041</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2702</span> → <span class="cddto">2770</span></dt>
|
||
<dd class="clearfix"> fn3; Fibronectin type III domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=365868">pfam00092</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1229</span> → <span class="cddto">1400</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=381780">cl00057</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">36</span> → <span class="cddto">200</span></dt>
|
||
<dd class="clearfix"> vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
<li>
|
||
<p><a href="/nuccore/XM_030245451.2">XM_030245451.2</a> → <a href="/protein/XP_030101311.1">XP_030101311.1</a> collagen alpha-3(VI) chain isoform X4</p>
|
||
<dl>
|
||
<dt>UniProtKB/TrEMBL</dt>
|
||
<dd>
|
||
<a href="https://www.uniprot.org/uniprot/A0A087WS16" ref="itool=Gene_FullReport&PrId=5380&uid=12835&nlmid=&db=gene">A0A087WS16</a>
|
||
</dd>
|
||
<dt class="clear"> Conserved Domains (7) <a href="/Structure/cdd/wrpsb.cgi?seqinput=XP_030101311.1">summary</a></dt>
|
||
<dd>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=189968">pfam01391</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1503</span> → <span class="cddto">1560</span></dt>
|
||
<dd class="clearfix"> Collagen; Collagen triple helix repeat (20 copies)</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=214621">smart00327</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">1034</span> → <span class="cddto">1189</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor (vWF) type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=238758">cd01481</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">630</span> → <span class="cddto">794</span></dt>
|
||
<dd class="clearfix"> vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=333766">pfam00014</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2425</span> → <span class="cddto">2476</span></dt>
|
||
<dd class="clearfix"> Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=365830">pfam00041</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">2307</span> → <span class="cddto">2375</span></dt>
|
||
<dd class="clearfix"> fn3; Fibronectin type III domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=365868">pfam00092</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">834</span> → <span class="cddto">1005</span></dt>
|
||
<dd class="clearfix"> VWA; von Willebrand factor type A domain</dd>
|
||
</dl>
|
||
<dl class="level2">
|
||
<dt><a href="/Structure/cdd/cddsrv.cgi?uid=381780">cl00057</a><br /><span class="cddlocation">Location:</span><span class="cddfrom">427</span> → <span class="cddto">589</span></dt>
|
||
<dd class="clearfix"> vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...</dd>
|
||
</dl>
|
||
</dd>
|
||
</dl>
|
||
</li>
|
||
</ol>
|
||
</div>
|
||
<h3 class="genomerefseqs gene_std_toggler">
|
||
<a class="jig-ncbitoggler">Suppressed Reference Sequence(s)</a>
|
||
</h3>
|
||
<div class="genomerefseqs_slave">
|
||
<p class="desc"> The following Reference Sequences have been suppressed. <a href="#expl-suppressed-desc" id="expl-suppressed">Explain</a></p>
|
||
<p id="expl-suppressed-desc" style="display:none">These RefSeqs were suppressed for the
|
||
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
|
||
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
|
||
their accession.version below.</p>
|
||
<ol>
|
||
<li>
|
||
<p><a href="/nuccore/31791060">NM_009935.1</a>: Suppressed sequence</p>
|
||
<dl>
|
||
<dt>Description</dt>
|
||
<dd>NM_009935.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.</dd>
|
||
</dl>
|
||
</li>
|
||
</ol>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-related-sequences">
|
||
<section class="rprt-section-header" id="related-sequences">
|
||
<h2 id="header-related-sequences">
|
||
<a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-related-sequences .rprt-section-body'">
|
||
<span class="ui-ncbitoggler-master-text">Related sequences</span>
|
||
</a>
|
||
</h2>
|
||
<div class="rprt-section-tools">
|
||
<a href="#top" title="Go to the top of the page" class="gene-top-page">
|
||
<span>Go to the top of the page</span>
|
||
</a>
|
||
<a href="/books/NBK3841/#EntrezGene.Related_Sequences" title="Help" class="gene-section-help">
|
||
<span>Help</span>
|
||
</a>
|
||
</div>
|
||
</section>
|
||
<div class="rprt-section-body">
|
||
<div>
|
||
<table id="proteinTblId" class="jig-ncbiservergrid" data-jigconfig="webservice:'/gene/12835/data/related-sequences/',webserviceParams: 'p$l=Ajax', isServersideLoad:true, isServersidePaging: true,isServersidePagingCached: true,pageSize:25">
|
||
<thead>
|
||
<tr>
|
||
<th colspan="2" id="rs-nucleo">Nucleotide</th>
|
||
<th rowspan="2" id="rs-protein">Protein</th>
|
||
<th class="nucleoTblTh" rowspan="2" id="rs-strain">Strain</th>
|
||
</tr>
|
||
<tr>
|
||
<th id="rs-heading">Heading</th>
|
||
<th id="rs-heading-acc">Accession and Version</th>
|
||
</tr>
|
||
</thead>
|
||
<tbody></tbody>
|
||
</table>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
|
||
<div class="rprt-section gene-additional-links">
|
||
|
||
<section class="rprt-section-header" id="additional-links"><h2 id="header-additional-links"><a href="#" class="jig-ncbitoggler-open" data-jigconfig="targets: '.gene-additional-links .rprt-section-body'"><span class="ui-ncbitoggler-master-text">Additional links</span></a></h2><div class="rprt-section-tools"><a href="#top" title="Go to the top of the page" class="gene-top-page"><span>Go to the top of the page</span></a><a href="/books/NBK3841/#EntrezGene.Additional_Links" title="Help" class="gene-section-help"><span>Help</span></a></div></section>
|
||
|
||
<div class="rprt-section-body" style="">
|
||
|
||
|
||
<h3 class="withnote" id="genelinkout">
|
||
<a class="jig-ncbitoggler">Gene LinkOut</a>
|
||
</h3><div>
|
||
<p>The following <a href="https://www.ncbi.nlm.nih.gov/projects/linkout/index.html">LinkOut</a> resources are supplied by external providers. These providers are responsible for maintaining the links. </p>
|
||
<div>
|
||
<div class="linkout">
|
||
<a class="jig-ncbitoggler-open main">
|
||
<span>Chemical Information</span>
|
||
</a>
|
||
<ul>
|
||
<li><span class="order-rsc"></span>MilliporeSigma</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.sigmaaldrich.com/catalog/genes/COL6A3?lang=en&region=US" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=9978">
|
||
<span>Col6a3 products</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
</ul>
|
||
</div>
|
||
<div class="linkout">
|
||
<a class="jig-ncbitoggler-open main">
|
||
<span>Molecular Biology Databases</span>
|
||
</a>
|
||
<ul>
|
||
<li><span class="free-rsc"></span>Bgee database</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.bgee.org/gene/ENSMUSG00000048126" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=10418">
|
||
<span>Col6a3 gene expression</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>BioGPS</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://biogps.org/gene/12835/" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=5059">
|
||
<span>BioGPS</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>BioGRID Open Repository of CRISPR Screens (ORCS)</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://orcs.thebiogrid.org/Gene/12835" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=10164">
|
||
<span>BioGRID CRISPR Screen Phenotypes (6 hits/96 screens)</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>GlyGen glycoinformatics resource</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://glygen.org/protein/E9PWQ3" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=10227">
|
||
<span>GlyGen glycoinformatics resource</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li>Ingenuity Pathways Analysis</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://partnersolution.ingenuity.com/?cid=97ae3f91eab87a&p1=Entrez&p2=GV&s=&ipaUri=%2Fpa%2Fapi%2Fv2%2Fgeneview%3Fapplicationname%3DEntrez%26geneId%3D12835%26geneidtype%3Dentrezgene" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=5628">
|
||
<span>Ingenuity Pathways Analysis</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>InnateDB</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://www.innatedb.com/getGeneCard.do?id=180058" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=7894">
|
||
<span>InnateDB</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>Kyoto Encyclopedia of Genes and Genomes</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://www.genome.jp/dbget-bin/www_bget?mmu:12835" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=5174">
|
||
<span>Kyoto Encyclopedia of Genes and Genomes</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>OMA Browser: Orthologous MAtrix</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://omabrowser.org/oma/info/MOUSE29165/" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=9822">
|
||
<span>OMA Browser: Orthologous MAtrix</span>
|
||
</a>
|
||
</li>
|
||
<li>
|
||
<a target="_blank" href="https://omabrowser.org/oma/info/MOUSE29161/" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=9822">
|
||
<span>OMA Browser: Orthologous MAtrix</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>OrthoDB catalog of orthologs</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.orthodb.org/?ncbi=12835" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=8178">
|
||
<span>Orthologs</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="free-rsc"></span>PhosphoSitePlus</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.phosphosite.org/entrezGeneIdAction.action?id=12835" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=7987">
|
||
<span>PhosphoSitePlus® - comprehensive post-translational modification resource</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
</ul>
|
||
</div>
|
||
<div class="linkout">
|
||
<a class="jig-ncbitoggler-open main">
|
||
<span>Research Materials</span>
|
||
</a>
|
||
<ul>
|
||
<li><span class="order-rsc"></span>Addgene Non-profit plasmid repository</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://addgene.org//browse/gene/12835" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=5304">
|
||
<span>Get Plasmids - Addgene</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li>ExactAntigen/Labome</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.labome.com/review/gene/mouse/Col6a3-antibody.html" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=5753">
|
||
<span>reagent review</span>
|
||
</a>
|
||
</li>
|
||
<li>
|
||
<a target="_blank" href="https://www.labome.com/gene/mouse/Col6a3-antibody.html" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=5753">
|
||
<span>reagents</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="order-rsc"></span>GenScript latest version of gene cDNA ORF Clone</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://www.genscript.com/gene/12835" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=8012">
|
||
<span>GenScript latest version of gene cDNA ORF Clone</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="order-rsc"></span>GeneCopoeia Inc.</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.genecopoeia.com/product/search/result.php?prt=26&field=5&key=12835" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=7255">
|
||
<span>Order TALEN/CRISPR clones</span>
|
||
</a>
|
||
</li>
|
||
<li>
|
||
<a target="_blank" href="https://www.genecopoeia.com/product/search/result.php?prt=7&field=5&key=12835" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=7255">
|
||
<span>Order full-length ORF clone</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
<li><span class="order-rsc"></span>OriGene</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="https://www.origene.com/search?q=COL6A3" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=7994">
|
||
<span>Order COL6A3 cDNA clone/Protein/Antibody/RNAi</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
</ul>
|
||
</div>
|
||
<div class="linkout">
|
||
<a class="jig-ncbitoggler-open main">
|
||
<span>Tools</span>
|
||
</a>
|
||
<ul>
|
||
<li><span class="free-rsc"></span>GeneMANIA</li>
|
||
<ul>
|
||
<li>
|
||
<a target="_blank" href="http://genemania.org/link?o=10090&g=12835" ref="itool=Gene_FullReport&uid=12835&nlmid=&db=gene&log$=linkoutlink&PrId=7529">
|
||
<span>GeneMANIA</span>
|
||
</a>
|
||
</li>
|
||
</ul>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
<div id="urls-in-genombrowser" style="display:none">
|
||
|
||
</div>
|
||
</div>
|
||
</div>
|
||
|
||
<div><input type="hidden" class="section_status_input" name="status_checked" id="status_checked" value="" /><input type="hidden" class="section_status_input" name="status_open" id="status_open" value="summary,region,context,bibliography,phenotypes,variation,hiv,interactions,pathways,geneInfo,proteinInfo,refSeq,related,links" /><input type="hidden" class="section_status_input" name="status_exist" id="status_exist" value="summary,context,region,expression,bibliography,variation,interactions,geneInfo,proteinInfo,refSeq,related,links" /><input type="hidden" class="section_status_input" name="status_closed" id="status_closed" value="" /><meta name="status_checked" content="" class="meta_section_status" /><meta name="status_open" content="summary,region,context,bibliography,phenotypes,variation,hiv,interactions,pathways,geneInfo,proteinInfo,refSeq,related,links" class="meta_section_status" /><meta name="status_exist" content="summary,context,region,expression,bibliography,variation,interactions,geneInfo,proteinInfo,refSeq,related,links" class="meta_section_status" /><meta name="status_closed" content="" class="meta_section_status" /><script type="text/javascript">
|
||
|
||
var section_status_meta = {
|
||
'status_checked': '',
|
||
'status_open': 'summary,region,context,bibliography,phenotypes,variation,hiv,interactions,pathways,geneInfo,proteinInfo,refSeq,related,links',
|
||
'status_exist': 'summary,context,region,expression,bibliography,variation,interactions,geneInfo,proteinInfo,refSeq,related,links',
|
||
'status_closed': ''
|
||
};
|
||
|
||
|
||
/*
|
||
for (var o in section_status_meta) {
|
||
var meta=document.createElement('meta');
|
||
meta.name = o;
|
||
meta.content = section_status_meta[o];
|
||
var attr = document.createAttribute('data-ignore-limit');
|
||
attr.value = 'true';
|
||
meta.setAttributeNode(attr);
|
||
document.getElementsByTagName('head')[0].appendChild(meta);
|
||
}
|
||
*/
|
||
|
||
|
||
var __ncbi_sg_pingCallbacks_render_gene = function (data, evtObj, type) {
|
||
// data looks like {jsevent: "click", "link_id": "foo", ...}
|
||
// evtObj is the JS event object
|
||
// type is either "stat" (for applog) or "ga"
|
||
var extraData = {};
|
||
if (type == "stat") {
|
||
for (var o in section_status_meta) {
|
||
extraData[o] = section_status_meta[o];
|
||
}
|
||
|
||
return extraData;
|
||
|
||
}
|
||
}
|
||
|
||
|
||
</script></div>
|
||
|
||
</div>
|
||
</div>
|
||
|
||
<div id="messagearea_bottom">
|
||
|
||
</div>
|
||
<div class=" bottom">
|
||
|
||
</div>
|
||
|
||
</div>
|
||
</div>
|
||
<div class="supplemental col three_col last" id="sidebar_tabular">
|
||
<!-- sidebar close/hide button-->
|
||
<div class="ui-helper-clearfix">
|
||
<a href="#" id="sidecontent_2_pullout" style="float:right;" class="sidecontentpullout_local collapse_button"><span>Hide sidebar >></span></a>
|
||
</div>
|
||
<!-- end sidebar close/hide button-->
|
||
|
||
<h2 class="offscreen_noflow">Supplemental Content</h2>
|
||
|
||
<div id="gene-sidebar">
|
||
<div>
|
||
<div class="portlet brieflink dis-table-of-contents">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Table of contents</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_TableOfContents.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_TableOfContents" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_TableOfContents.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li class="">
|
||
<a href="#summary">Summary</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#genomic-context">Genomic context</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#genomic-regions-transcripts-products">Genomic regions, transcripts, and products</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#gene-expression">Expression</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#bibliography">Bibliography</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#variation">Variation</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#interactions">Interactions</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#general-gene-info">General gene information</a>
|
||
<div class="subsection-links"><a href="#gene-markers">Markers</a>, <a href="#homology">Homology</a>, <a href="#gene-ontology">Gene Ontology</a></div>
|
||
</li>
|
||
<li class="">
|
||
<a href="#general-protein-info">General protein information</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#reference-sequences">NCBI Reference Sequences (RefSeq)</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#related-sequences">Related sequences</a>
|
||
</li>
|
||
<li class="">
|
||
<a href="#additional-links">Additional links</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet brieflink dis-genomesbrowser brieflink dis-genomesbrowser">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Genome Browsers</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_GenomeBrowsers.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_GenomeBrowsers" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_GenomeBrowsers.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li>
|
||
<a href="#">Loading...</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet dis-related-info brieflink">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Related information</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_RelatedInformation.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="discovery_db_links" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_RelatedInformation.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content DiscoveryDbLinks">
|
||
<ul>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/structure?LinkName=gene_structure&from_uid=12835" ref="log$=recordlinks">3D structures</a>
|
||
<div class="brieflinkpop offscreen_noflow">3D structure of a gene</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/bioproject?LinkName=gene_bioproject&from_uid=12835" ref="log$=recordlinks">BioProjects</a>
|
||
<div class="brieflinkpop offscreen_noflow">BioProjects related to a gene</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/biosystems?LinkName=gene_biosystems&from_uid=12835" ref="log$=recordlinks">BioSystems</a>
|
||
<div class="brieflinkpop offscreen_noflow">BioSystems</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/CCDS/CcdsBrowse.cgi?REQUEST=GENEID&DATA=12835" ref="log$=recordlinks">CCDS</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to CCDS</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/cdd?LinkName=gene_cdd&from_uid=12835" ref="log$=recordlinks">Conserved Domains</a>
|
||
<div class="brieflinkpop offscreen_noflow">Related CDD</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pmc?LinkName=gene_pmc&from_uid=12835" ref="log$=recordlinks">Full text in PMC</a>
|
||
<div class="brieflinkpop offscreen_noflow">PMC links</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pmc?LinkName=gene_pmc_nucleotide&from_uid=12835" ref="log$=recordlinks">Full text in PMC_nucleotide</a>
|
||
<div class="brieflinkpop offscreen_noflow">Full text in PubMedCentral identified from shared sequence links</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/gene?LinkName=gene_gene_neighbors&from_uid=12835" ref="log$=recordlinks">Gene neighbors</a>
|
||
<div class="brieflinkpop offscreen_noflow">Overlapping genes and two nearest non-overlapping genes on either side</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/genome?LinkName=gene_genome&from_uid=12835" ref="log$=recordlinks">Genome</a>
|
||
<div class="brieflinkpop offscreen_noflow">Related Genome</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/geoprofiles?LinkName=gene_geoprofiles&from_uid=12835" ref="log$=recordlinks">GEO Profiles</a>
|
||
<div class="brieflinkpop offscreen_noflow">Related GEO</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/homologene?LinkName=gene_homologene&from_uid=12835" ref="log$=recordlinks">HomoloGene</a>
|
||
<div class="brieflinkpop offscreen_noflow">Related HomoloGene</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/nuccore?LinkName=gene_nuccore&from_uid=12835" ref="log$=recordlinks">Nucleotide</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to related Nucleotide entry</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/probe?LinkName=gene_probe&from_uid=12835" ref="log$=recordlinks">Probe</a>
|
||
<div class="brieflinkpop offscreen_noflow">Related Probe entry</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/protein?LinkName=gene_protein&from_uid=12835" ref="log$=recordlinks">Protein</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to related protein entry</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pccompound?LinkName=gene_pccompound&from_uid=12835" ref="log$=recordlinks">PubChem Compound</a>
|
||
<div class="brieflinkpop offscreen_noflow">PubChem Compounds</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pcsubstance?LinkName=gene_pcsubstance&from_uid=12835" ref="log$=recordlinks">PubChem Substance</a>
|
||
<div class="brieflinkpop offscreen_noflow">PubChem Substances</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pubmed?LinkName=gene_pubmed&from_uid=12835" ref="log$=recordlinks">PubMed</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to related PubMed entry</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pubmed?LinkName=gene_pubmed_rif&from_uid=12835" ref="log$=recordlinks">PubMed (GeneRIF)</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to related PubMed article from GeneRIFs</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/pubmed?LinkName=gene_pubmed_pmc_nucleotide&from_uid=12835" ref="log$=recordlinks">PubMed(nucleotide/PMC)</a>
|
||
<div class="brieflinkpop offscreen_noflow">Citations in PubMed identified from shared sequence and PMC links.</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/protein?LinkName=gene_protein_refseq&from_uid=12835" ref="log$=recordlinks">RefSeq Proteins</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to Protein RefSeqs</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/nuccore?LinkName=gene_nuccore_refseqrna&from_uid=12835" ref="log$=recordlinks">RefSeq RNAs</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to Nucleotide RefSeq RNAs</div>
|
||
</li>
|
||
<li class="brieflinkpopper">
|
||
<a class="brieflinkpopperctrl" href="/taxonomy?LinkName=gene_taxonomy&from_uid=12835" ref="log$=recordlinks">Taxonomy</a>
|
||
<div class="brieflinkpop offscreen_noflow">Link to related taxonomy entry</div>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet dis-links-to-other-res brieflink">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Links to other resources</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_LinksTwo.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_LinksTwo" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_LinksTwo.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li>
|
||
<a href="http://www.informatics.jax.org/marker/MGI:88461">MGI</a>
|
||
</li>
|
||
<li>
|
||
<a href="http://www.ensembl.org/id/ENSMUSG00000048126">Ensembl</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.alliancegenome.org/gene/MGI:88461">AllianceGenome</a>
|
||
</li>
|
||
<li>
|
||
<a href="http://www.informatics.jax.org/gxd/marker/MGI:88461">Gene Expression Database (GXD) at MGI</a>
|
||
</li>
|
||
<li>
|
||
<a href="http://genome.ucsc.edu/cgi-bin/hgTracks?org=mouse&position=NM_001243008">UCSC</a>
|
||
</li>
|
||
<li>
|
||
<a href="http://www.genome.jp/dbget-bin/www_bget?mmu:12835">KEGG</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet brieflink dis-general-info">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>General information</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_GeneralInfo.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_GeneralInfo" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_GeneralInfo.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li>
|
||
<a href="/pmc/?term=PMC4383897+OR+PMC3013746+OR+PMC1761442+OR+PMC539985">About Gene</a>
|
||
</li>
|
||
<li>
|
||
<a href="/books/NBK3840">FAQ</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://ftp.ncbi.nlm.nih.gov/gene/">FTP site</a>
|
||
</li>
|
||
<li>
|
||
<a href="/books/NBK3841/">Help</a>
|
||
</li>
|
||
<li>
|
||
<a href="/books/NBK3842/">My NCBI help</a>
|
||
</li>
|
||
<li>
|
||
<a href="/books/NBK21085/">NCBI Handbook</a>
|
||
</li>
|
||
<li>
|
||
<a href="/gene/statistics/">Statistics</a>
|
||
</li>
|
||
</ul>
|
||
</div>
|
||
</div>
|
||
|
||
<div class="portlet brieflink dis-related-sites">
|
||
<div class="portlet_head">
|
||
<div class="portlet_title">
|
||
<h3>Related sites</h3>
|
||
</div>
|
||
<a name="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_RelatedSites.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="Gene_RelatedSites" id="EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVFullReport.Gene_RightColumn.Gene_RelatedSites.Shutter"></a>
|
||
</div>
|
||
<div class="portlet_content">
|
||
<ul>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/BLAST">BLAST</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/genome">Genome</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/bioproject">BioProject</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/genome/gdv/">Genome Data Viewer</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/geo">GEO</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/omim">OMIM</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/probe">Probe</a>
|
||
</li>
|
||
<li>
|
||
<a href="https://www.ncbi.nlm.nih.gov/RefSeq">RefSeq</a>
|
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||
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<a href="https://www.ncbi.nlm.nih.gov/RefSeq/update.cgi?geneid=12835&symbol=Col6a3">Submit Correction</a>
|
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|
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|
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<a href="/gene/submit-generif?geneId=12835&sym=Col6a3&name=collagen, type VI, alpha 3&org=Mus musculus">Submit GeneRIF</a>
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<div class="ralinkpop offscreen_noflow">Col6a3 collagen, type VI, alpha 3 [Mus musculus]<div class="brieflinkpopdesc">Gene ID:12835</div></div>
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