nih-gov/www.ncbi.nlm.nih.gov/gdv/browser/index.html

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<!DOCTYPE html>
<html lang="en" >
<head >
<meta charset="UTF-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<!-- Mobile properties -->
<meta name="HandheldFriendly" content="True">
<meta name="MobileOptimized" content="320">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="stylesheet" href="/gdv/browser/static/django_uswds/uswds/css/uswds.css" />
<link rel="stylesheet" href="/gdv/browser/static/nwds/css/nwds.css" />
<link rel="stylesheet" href="/gdv/browser/static/nwds/css/header.css" />
<link rel="stylesheet" href="/gdv/browser/static/nwds/css/footer.css" />
<link rel="stylesheet" href="/gdv/browser/static/nwds/css/form.css" />
<link rel="stylesheet" href="/gdv/browser/static/uswds3/css/uswds-fix.css" />
<link rel="stylesheet" type="text/css" href="/core/extjs/ext-7.1.0/build/classic/theme-gray/resources/theme-gray-all.css"/>
<link rel="stylesheet" type="text/css" href="/projects/sviewer/css/style.css" media="screen, projection, print"/>
<link rel="stylesheet" type="text/css" href="/gdv/browser/static/css/fe4476f2.gdv-all.css"/>
<link rel="stylesheet" type="text/css" href="/gdv/browser/static/gdv/css/bar.css"/>
<title>Genome Data Viewer - NCBI</title>
<!-- Favicons -->
<link rel="shortcut icon" type="image/ico" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon.ico" />
<link rel="icon" type="image/png" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon.png" />
<!-- 192x192, as recommended for Android
http://updates.html5rocks.com/2014/11/Support-for-theme-color-in-Chrome-39-for-Android
-->
<link rel="icon" type="image/png" sizes="192x192" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon-192.png" />
<!-- 57x57 (precomposed) for iPhone 3GS, pre-2011 iPod Touch and older Android devices -->
<link rel="apple-touch-icon-precomposed" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon-57.png">
<!-- 72x72 (precomposed) for 1st generation iPad, iPad 2 and iPad mini -->
<link rel="apple-touch-icon-precomposed" sizes="72x72" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon-72.png">
<!-- 114x114 (precomposed) for iPhone 4, 4S, 5 and post-2011 iPod Touch -->
<link rel="apple-touch-icon-precomposed" sizes="114x114" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon-114.png">
<!-- 144x144 (precomposed) for iPad 3rd and 4th generation -->
<link rel="apple-touch-icon-precomposed" sizes="144x144" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon-144.png">
<meta name="robots" content="index, follow"/>
<!-- Logging params: Pinger defaults -->
<meta name="ncbi_app" content="GDV" />
<meta name="ncbi_pdid" content="index" />
<meta name="ncbi_phid" content="322CA9CA14242AF500006555FC658F1E.1.m_4" />
<meta name="ncbi_page" content="home"/>
<meta name="ncbi_op" content="page_view"/>
<meta name="description" content="Genome Data Viewer"/>
<script type="text/javascript">/** GDV config settings */
window.GB = {
config: {
config: {
"history": true,
"localStorage": true,
"chrom_only": true,
"placed": true,
"primary_only": false,
"rs": false,
"guard": 1,
"gdvl": 0
},
defs: [],
defaults: {
resource: "genome",
context: "genome",
app: "GDV",
version: "5.3.13"
},
navigator: {
version: 521,
top_section: 1
},
gdv: {
order: 0,
assemblies: "/projects/genome/gdv-landing/4.3.0-gdvl/assemblies.json"
},
url: {
params: "id|acc|context|rid|alignid|alignacc|range|hub|ts|tsid|snp|gdv|guard|type|name|term",
check: true,
portalcheck: true
},
state: {
preserveURL: true,
history: true,
hide: "chr,from,to,mk,search"
},
ideo: {
// specific ideogram heights:
// human
9606: {
height: 160
},
// fly (too many bands)
7227: {
height: 280
},
height: 120,
nonNuclear: true,
cyto: "GCF_000001405.13:850,GCF_000001405.26:850"
},
userdata: {
loadHubTracks: true
},
header: {
acc: false,
range: false
},
myncbi: {
fix: true
},
search: {
columns: "name,location,go",
autoselect: true
},
sv_wrap: {
encodeShown: true
},
exon_nav: {
paddings: [{
def: "10%",
desc: "Use 10% padding"
}, {
def: "25%",
desc: "Use 25% padding"
}, {
def: "50%",
desc: "Use 50% padding"
}]
},
blast: {
wrap: ".gb-blast-wrap",
uploadTimeout: 3000
},
gwas: {
tracks: ['T687068']
},
queryAlert: true
}
};
const baseURL = '/gdv/browser';
const tracksetHost = '';
/** NWDS header */
const useOfficialGovtHeader = true;
</script>
<script type="text/javascript">
function _GBGetContextInfo(){return {"accs": ["GCF_000001405.39"], "acc": "GCF_000001405.39", "type": "assembly", "addToDefaultTracks": true, "subject": {"data": []}, "assemblies": [{"assm": "GCF_000001405.39"}]};}
function _GBGetAnnotInfo(){return [{"name": "GRCh38.p14", "acc": "GCF_000001405.40", "gb_acc": "GCA_000001405.29", "ref_acc": "GCF_000001405.40", "similarity": "different", "submitter": "Genome Reference Consortium", "refseq_category": "Reference genome", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Patch", "genome_rep": "Full", "release_date": "2022/02/08 00:00", "sortorder": "1C3X01019421205880000014057059", "annotation_release": {"id": 110, "version": "RS_2024_08", "url": "/genome/annotation_euk/Homo_sapiens/GCF_000001405.40-RS_2024_08.html", "release_date": "2024-08-26"}}, {"name": "T2T-CHM13v2.0", "acc": "GCF_009914755.1", "gb_acc": "GCA_009914755.4", "ref_acc": "GCF_009914755.1", "similarity": "different", "submitter": "T2T Consortium", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "release_date": "2022/02/16 00:00", "sortorder": "5C1X01018493827520099147559598", "annotation_release": {"id": 110, "version": "RS_2024_08", "url": "/genome/annotation_euk/Homo_sapiens/GCF_000001405.40-RS_2024_08.html", "release_date": "2024-08-26"}}, {"name": "GRCh37.p13", "acc": "GCF_000001405.25", "gb_acc": "GCA_000001405.14", "ref_acc": "GCF_000001405.25", "similarity": "identical", "submitter": "Genome Reference Consortium", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Patch", "genome_rep": "Full", "release_date": "2013/07/03 00:00", "sortorder": "5C3X01019614910670000014058574", "annotation_release": {"id": 105, "version": "105.20220307", "url": "/genome/annotation_euk/Homo_sapiens/105.20220307", "release_date": "2022-03-10"}, "latest": "GCF_000001405.40"}, {"name": "CHM1_1.1", "acc": "GCF_000306695.2", "gb_acc": "GCA_000306695.2", "ref_acc": "GCF_000306695.2", "similarity": "different", "submitter": "Washington University School of Medicine", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "release_date": "2013/08/01 00:00", "sortorder": "9C3X01019998560630003066959797", "annotation_release": {"id": 108, "version": "108", "url": null, "release_date": "2016-06-06"}}, {"name": "HuRef", "acc": "GCF_000002125.1", "gb_acc": "GCA_000002125.2", "ref_acc": "GCF_000002125.1", "similarity": "identical", "submitter": "J. Craig Venter Institute", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "release_date": "2009/08/12 00:00", "sortorder": "9C3X01019998915680000021259798", "annotation_release": {"id": 106, "version": "106", "url": null, "release_date": "2014-02-03"}}, {"name": "hg002v1.1.mat", "acc": "GCA_018852615.3", "gb_acc": "GCA_018852615.3", "ref_acc": "", "similarity": "", "submitter": "UCSC Genomics Institute", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "release_date": "2024/09/03 00:00", "sortorder": "5C2X01018456586020188526159600", "annotation_release": {}}, {"name": "hg002v1.1.pat", "acc": "GCA_018852605.3", "gb_acc": "GCA_018852605.3", "ref_acc": "", "similarity": "", "submitter": "UCSC Genomics Institute", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "release_date": "2024/09/03 00:00", "sortorder": "5C2X01018532131760188526059600", "annotation_release": {}}, {"name": "Ash1_v2.2", "acc": "GCA_011064465.2", "gb_acc": "GCA_011064465.2", "ref_acc": "", "similarity": "", "submitter": "Johns Hopkins University", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "release_date": "2022/06/02 00:00", "sortorder": "5C3X01018498455440110644659700", "annotation_release": {}}, {"name": "hg01243.v3.0", "acc": "GCA_018873775.2", "gb_acc": "GCA_018873775.2", "ref_acc": "", "similarity": "", "submitter": "Johns Hopkins University", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "release_date": "2021/09/27 00:00", "sortorder": "5C3X01018503024940188737759700", "annotation_release": {}}, {"name": "HG002.pat.cur.20211005", "acc": "GCA_021950905.1", "gb_acc": "GCA_021950905.1", "ref_acc": "", "similarity": "", "submitter": "Human Pangenome Reference Consortium", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "release_date": "2022/02/04 00:00", "sortorder": "5C3X01019150728780219509059800", "annotation_release": {}}, {"name": "HG002.mat.cur.20211005", "acc": "GCA_021951015.1", "gb_acc": "GCA_021951015.1", "ref_acc": "", "similarity": "", "submitter": "Human Pangenome Reference Consortium", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "release_date": "2022/02/04 00:00", "sortorder": "5C3X01019371202590219510159800", "annotation_release": {}}, {"name": "ASM2283312v2", "acc": "GCA_022833125.2", "gb_acc": "GCA_022833125.2", "ref_acc": "", "similarity": "", "submitter": "Celera Genomics", "refseq_category": "Na", "taxid": "9606", "species_taxid": "9606", "organism_name": "Homo sapiens (human)", "species": "Homo sapiens", "level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "release_date": "2022/04/13 00:00", "sortorder": "5C3X01019993912280228331259700", "annotation_release": {}}];}
function _GBGetAssemblyInfo(){
var defs = {"assemblies": [{"name": "GRCh38.p14", "acc": "GCF_000001405.40", "taxid": 9606, "reference": true, "regions": true, "defaultSeq": "NC_000001.11", "scaffoldCount": 166, "altCount": 514, "orgName": "Homo sapiens", "orgCommonName": "human", "type": "Full-Assembly", "aliases": ["GCF_000001405.40", "GCF_000001405.39", "GCF_000001405.38", "GCF_000001405.37", "GCF_000001405.36", "GCF_000001405.35", "GCF_000001405.34", "GCF_000001405.33", "GCF_000001405.32", "GCF_000001405.31", "GCF_000001405.30", "GCF_000001405.29", "GCF_000001405.28", "GCF_000001405.27", "GCF_000001405.26", "GCA_000001405.29", "GCA_000001405.28", "GCA_000001405.27", "GCA_000001405.26", "GCA_000001405.25", "GCA_000001405.24", "GCA_000001405.23", "GCA_000001405.22", "GCA_000001405.21", "GCA_000001405.20", "GCA_000001405.19", "GCA_000001405.18", "GCA_000001405.17", "GCA_000001405.16", "GCA_000001405.15"], "units": [{"name": "Primary Assembly", "acc": "GCF_000001305.16", "taxid": 9606, "type": "Primary-Unit", "seq": [{"name": "1", "ucsc_name": "chr1", "chrom": 1, "topl": 1, "length": 248956422, "acc": "NC_000001.11", "gi": 568815597}, {"name": "2", "ucsc_name": "chr2", "chrom": 1, "topl": 1, "length": 242193529, "acc": "NC_000002.12", "gi": 568815596}, {"name": "3", "ucsc_name": "chr3", "chrom": 1, "topl": 1, "length": 198295559, "acc": "NC_000003.12", "gi": 568815595}, {"name": "4", "ucsc_name": "chr4", "chrom": 1, "topl": 1, "length": 190214555, "acc": "NC_000004.12", "gi": 568815594}, {"name": "5", "ucsc_name": "chr5", "chrom": 1, "topl": 1, "length": 181538259, "acc": "NC_000005.10", "gi": 568815593}, {"name": "6", "ucsc_name": "chr6", "chrom": 1, "topl": 1, "length": 170805979, "acc": "NC_000006.12", "gi": 568815592}, {"name": "7", "ucsc_name": "chr7", "chrom": 1, "topl": 1, "length": 159345973, "acc": "NC_000007.14", "gi": 568815591}, {"name": "8", "ucsc_name": "chr8", "chrom": 1, "topl": 1, "length": 145138636, "acc": "NC_000008.11", "gi": 568815590}, {"name": "9", "ucsc_name": "chr9", "chrom": 1, "topl": 1, "length": 138394717, "acc": "NC_000009.12", "gi": 568815589}, {"name": "10", "ucsc_name": "chr10", "chrom": 1, "topl": 1, "length": 133797422, "acc": "NC_000010.11", "gi": 568815588}, {"name": "11", "ucsc_name": "chr11", "chrom": 1, "topl": 1, "length": 135086622, "acc": "NC_000011.10", "gi": 568815587}, {"name": "12", "ucsc_name": "chr12", "chrom": 1, "topl": 1, "length": 133275309, "acc": "NC_000012.12", "gi": 568815586}, {"name": "13", "ucsc_name": "chr13", "chrom": 1, "topl": 1, "length": 114364328, "acc": "NC_000013.11", "gi": 568815585}, {"name": "14", "ucsc_name": "chr14", "chrom": 1, "topl": 1, "length": 107043718, "acc": "NC_000014.9", "gi": 568815584}, {"name": "15", "ucsc_name": "chr15", "chrom": 1, "topl": 1, "length": 101991189, "acc": "NC_000015.10", "gi": 568815583}, {"name": "16", "ucsc_name": "chr16", "chrom": 1, "topl": 1, "length": 90338345, "acc": "NC_000016.10", "gi": 568815582}, {"name": "17", "ucsc_name": "chr17", "chrom": 1, "topl": 1, "length": 83257441, "acc": "NC_000017.11", "gi": 568815581}, {"name": "18", "ucsc_name": "chr18", "chrom": 1, "topl": 1, "length": 80373285, "acc": "NC_000018.10", "gi": 568815580}, {"name": "19", "ucsc_name": "chr19", "chrom": 1, "topl": 1, "length": 58617616, "acc": "NC_000019.10", "gi": 568815579}, {"name": "20", "ucsc_name": "chr20", "chrom": 1, "topl": 1, "length": 64444167, "acc": "NC_000020.11", "gi": 568815578}, {"name": "21", "ucsc_name": "chr21", "chrom": 1, "topl": 1, "length": 46709983, "acc": "NC_000021.9", "gi": 568815577}, {"name": "22", "ucsc_name": "chr22", "chrom": 1, "topl": 1, "length": 50818468, "acc": "NC_000022.11", "gi": 568815576}, {"name": "X", "ucsc_name": "chrX", "chrom": 1, "topl": 1, "length": 156040895, "acc": "NC_000023.11", "gi": 568815575}, {"name": "Y", "ucsc_name": "chrY", "chrom": 1, "topl": 1, "length": 57227415, "acc": "NC_000024.10", "gi": 568815574}]}, {"name": "ALT_REF_LOCI_1", "acc": "GCF_000001315.3", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "1", "seqname": "1"}, {"name": "2", "seqname": "2"}, {"name": "3", "seqname": "3"}, {"name": "4", "seqname": "4"}, {"name": "5", "seqname": "5"}, {"name": "6", "seqname": "6"}, {"name": "7", "seqname": "7"}, {"name": "8", "seqname": "8"}, {"name": "9", "seqname": "9"}, {"name": "10", "seqname": "10"}, {"name": "11", "seqname": "11"}, {"name": "12", "seqname": "12"}, {"name": "13", "seqname": "13"}, {"name": "14", "seqname": "14"}, {"name": "15", "seqname": "15"}, {"name": "16", "seqname": "16"}, {"name": "17", "seqname": "17"}, {"name": "18", "seqname": "18"}, {"name": "19", "seqname": "19"}, {"name": "20", "seqname": "20"}, {"name": "21", "seqname": "21"}, {"name": "22", "seqname": "22"}, {"name": "X", "seqname": "X"}]}, {"name": "ALT_REF_LOCI_2", "acc": "GCF_000001325.3", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "1", "seqname": "1"}, {"name": "2", "seqname": "2"}, {"name": "3", "seqname": "3"}, {"name": "4", "seqname": "4"}, {"name": "5", "seqname": "5"}, {"name": "6", "seqname": "6"}, {"name": "7", "seqname": "7"}, {"name": "8", "seqname": "8"}, {"name": "11", "seqname": "11"}, {"name": "12", "seqname": "12"}, {"name": "15", "seqname": "15"}, {"name": "17", "seqname": "17"}, {"name": "18", "seqname": "18"}, {"name": "19", "seqname": "19"}, {"name": "22", "seqname": "22"}, {"name": "X", "seqname": "X"}]}, {"name": "ALT_REF_LOCI_3", "acc": "GCF_000001335.2", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "3", "seqname": "3"}, {"name": "4", "seqname": "4"}, {"name": "6", "seqname": "6"}, {"name": "8", "seqname": "8"}, {"name": "11", "seqname": "11"}, {"name": "19", "seqname": "19"}, {"name": "22", "seqname": "22"}]}, {"name": "ALT_REF_LOCI_4", "acc": "GCF_000001345.2", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "3", "seqname": "3"}, {"name": "6", "seqname": "6"}, {"name": "19", "seqname": "19"}]}, {"name": "ALT_REF_LOCI_5", "acc": "GCF_000001355.2", "taxid": 9606, "type": "Alt-Loci", "seq": [{"name": "3", "seqname": "3"}, 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<div class="gb-region-navigator gb-hidden gb-top">
<div section-name="header" class="gb-section gb-disabled">
<div class="gb-org"></div>
<div class="gb-assm"></div>
</div>
<div section-name="loc-search-top" class="gb-section gb-search-top gb-disabled">
<div>
<div class="gb-header">
<span>Search assembly</span>
</div>
<div class="gb-search-ctrl">
<label for="loc-search" aria-label="Search"></label>
<input id="loc-search" type="text" placeholder="" value="None"/>
<span class="gb-search-go" aria-label="Search"></span>
</div>
<div class="comment">
<span class="gb-search-help" title="Expand for search examples">Examples</span>
<ul search-id="loc-search"></ul>
</div>
</div>
</div>
<div section-name="loc-search" for="loc-search" class="gb-section gb-search gb-search-content gb-disabled gb-hidden">
<div class="gb-section-body">
<div class="gb-ctrl">
<span class="gb-close"></span>
</div>
<div class="content-results">
<ul class="content-tabs"></ul>
</div>
</div>
</div>
<div section-name="assembly-selector" class="gb-section gb-disabled">
<h4 title="Pick assembly">
<span></span>
<span>Assemblies</span>
</h4>
<div class="gb-section-body gb-assm-selector">
<div class="gb-switch">
<a href="/gdv" title="Go to landing page to switch organism">Switch organism</a>
</div>
<div class="gb-form">
<span>Assembly</span>
<select></select>
</div>
<div class="gb-assm-selector-comment">
<span class="comment">Select an assembly to change view</span>
</div>
<div class="gb-roi-wrap gb-hidden">
<h4>
<span>Locations</span>
</h4>
<div class="gb-roi-none gb-comment">No regions for assembly</div>
<div class="gb-roi-grid"></div>
</div>
</div>
</div>
<div section-name="ideo" config="nonNuclear:true" section-class="gb-ideo-selector-wrap" class="gb-section gb-ideo-selector-wrap gb-disabled gb-open" >
<h4 title="">
<span></span>
<span>Ideogram View</span>
</h4>
<div class="gb-section-body">
<div class="gb-ideo-selector"></div>
</div>
</div>
<div class="gb-section gb-disabled" section-name="user-data">
<h4 title="Configure tracks, upload data, add remote tracks or track hubs">
<span></span>
<span>Tracks and User Data</span>
</h4>
<div class="gb-section-body">
<div class="gb-user-data">
<div class="gb-track-sect">
<span>
<a class="gb-select gb-menu-empty" href="#menu">- no added tracks or track hubs -</a>
<a class="gb-menu" href="#menu" role="button">
<span>Options</span>
</a>
</span>
</div>
<div class="gb-file-upload gb-upload">
<div class="gb-track-data">
<div class="gb-name"></div>
<div class="gb-track-grid">
<div class="grid-header">
<table>
<thead>
<tr>
<th class="gbs-name">Name</th>
<th class="gbs-location">Location</th>
<th class="ctrl">
<span></span>
</th>
</tr>
<tr>
<th class="gb-acc" colspan="3"></th>
</tr>
</thead>
</table>
</div>
<div class="grid-data-wrap">
<div class="grid-data">
<table>
<tbody>
<tr>
<td></td>
</tr>
</tbody>
</table>
</div>
</div>
<div class="grid-ctrl">
<select>
<option>chr</option>
</select>
<span>
<input type="image" src="/gdv/browser/static/img/first-b.png" title="first" alt="first page"/>
<input type="image" src="/gdv/browser/static/img/prev-b.png" title="previous" alt="previous page"/>
<input type="text" id="gb-track-data-page"/>
<input type="image" src="/gdv/browser/static/img/next-b.png" title="next" alt="next page"/>
<input type="image" src="/gdv/browser/static/img/last-b.png" title="last" alt="last page"/>
</span>
</div>
<div class="grid-ctrl-info">
<label for="gb-track-data-page">Page 1 of 1</label>
</div>
</div>
<div class="gb-track-info"></div>
</div>
<div class="gb-file-progress"></div>
<div class="gb-uud-help">
<style>.gb-data-formats {
display: table;
}
.gb-data-formats li {
display: table-row;
}
.gb-data-formats span,
.gb-data-formats strong,
.gb-data-formats a {
display: table-cell;
}
.gb-data-formats strong {
color: #557;
white-space: nowrap;
font-weight: normal;
}
.gb-data-formats span {
padding: .1em .5em;
}</style>
<p>
<span>
Supported File/Data types
</span>
</p>
<ul>
<li>Uploaded tracks</li>
<ul class="gb-data-formats">
<li><strong>BED</strong>
</li>
<li><strong>GFF3</strong>
</li>
<li><strong>GTF</strong>
</li>
<li><strong>GVF</strong>
</li>
<li><strong>VCF</strong>
</li>
<li><strong>HGVS</strong>
</li>
<li><strong>WIG</strong>
</li>
<li><strong>ASN.1</strong><span> (text and binary)</span>
</li>
</ul>
<li>Remote tracks</li>
<ul class="gb-data-formats">
<li><strong>Remote BAM</strong><span>.bai or CSI index file present at same location</span>
</li>
<li><strong>Remote VCF</strong><span>un-indexed up to 2000 lines or with an index file present at the same location</span>
</li>
<li><strong>BigBed</strong>
</li>
<li><strong>BigWig</strong>
</li>
</ul>
</ul>
</div>
</div>
</div>
</div>
</div>
<div class="gb-section gb-disabled" section-name="blast-wrap">
<h4 title="">
<span></span>
<span>BLAST</span>
<span class="gb-help gb-blast-help" help_id="blast-widget" title="Context help"></span>
</h4>
<div class="gb-section-body">
<div class="gb-blast-wrap">
<div class="gb-blast-progress">
<span></span>
</div>
<div class="gb-blast-popup-wrap">
<span class="gb-blast-popup">
<a class="gb-blast-select" href="#menu" role="button">--- No BLAST RIDs ---</a>
<a class="gb-blast-add" href="#menu" role="button">Tools</a>
</span>
<div class="gb-blast-input">
<input type="text" placeholder="BLAST RID or URL" title="Enter RID or paste BLAST RID URL here and press Enter. Press Esc to cancel"/>
<span class="gb-enter"></span>
</div>
</div>
<div class="gb-blast-rid">
<h5 class="gb-toggle gb-closed">
<span>Details</span>
</h5>
<div class="gb-blast-desc gb-closed"></div>
<div class="gb-blast-items">
<ul>
<li class="gb-item-inspect" title="Show alignments inspector"></li>
<li class="gb-item-zoom" title="Zoom on enclosing range for selected alignments"></li>
<li class="gb-item-marker" title="Add marker(s) for selected alignment(s)"></li>
<li class="gb-item-filter" title="Filter alignments"></li>
</ul>
</div>
<h5>
<span>Alignments</span>
</h5>
<div class="gb-blast-al">
<a href="#menu"></a>
<div class="gb-blast-header"></div>
<div class="gb-blast-hits-wrap">
<div class="gb-blast-hits"></div>
</div>
</div>
<div class="gb-blast-comment gb-divider">
<span></span>
<div></div>
</div>
</div>
</div>
</div>
</div>
<div class="gb-section gb-disabled" section-name="track-search">
<h4 title="Search track by accession">
<span></span>
<span>Tracks by Accession</span>
</h4>
<div class="gb-section-body">
<div class="gbt-search">
<div class="gb-header">
<span>Search tracks</span>
</div>
<div class="gb-search-ctrl">
<label for="gbt-search" alt="search history" aria-label="Search History"></label>
<input id="gbt-search" type="text" placeholder="GEO, SRR, dbGaP or dbVar accession"/>
<span class="gb-search-go"></span>
</div>
<div class="gbt-search-help">
<p>
<span>Supported accession types</span>
</p>
<ul>
<li><span>GEO accessions:</span>
</li>
<li>
<a>GSE25249</a><span>(for GRCh37)</span>
</li>
<li>
<a>GSM1541970</a><span>(for GRCm38)</span>
</li>
<li><span>SRR accessions:</span>
</li>
<li><a>SRR834589</a><span>(for GRCh37)</span>
</li>
<li><span>dbGaP accessions:</span>
</li>
<li><a>pha000001</a><span>(for GRCh38)</span>
</li>
<li><span>dbVar accessions:</span>
</li>
<li>
<a>nstd82</a><span>(for GRCh38)</span>
</li>
</ul>
</div>
</div>
</div>
</div>
<div class="gb-section gb-disabled gb-hidden" section-name="region-details">
<h4 title="">
<span></span>
<span>Assembly Region Details</span>
</h4>
<div class="gb-section-body gb-region-details">
<h5>Features of Interest</h5>
<div class="gb-region-alts gb-none gb-hidden">
<h6>
Other sequence representations
<span class="gb-none">- none for the region</span>
<span class="gb-info">- loading …</span>
</h6>
<div class="gb-data">
<div class="grid-header">
<table>
<tr>
<th class="gb-name">Sequence ID</th>
<th>Type</th>
</tr>
<tr>
<td class="gb-row-header" colspan="2"></td>
</tr>
</table>
</div>
<div class="grid-data">
<table>
<tr>
<td></td>
</tr>
</table>
</div>
</div>
<div class="gb-back">Back to region <a href="#back"></a></div>
</div>
<div class="gb-region-issues gb-hidden"></div>
<div class="gb-region-similar gb-hidden"></div>
<div class="gb-region-details-alt gb-hidden">Not applicable for this organism/assembly</div>
</div>
</div>
<div class="gb-section gb-disabled" section-name="gene-history">
<h4 title="">
<span></span>
<span>History</span>
</h4>
<div class="gb-section-body">
<div class="gb-gene-history">
<select>
<option>--- current selection ---</option>
</select>
</div>
<div class="gb-gene-history-comment">
<span class="comment">Select gene from history</span>
</div>
</div>
</div>
</div>
</div>
<div class="content-right">
<div class="gdv-hidden">
<div widget-name="range-header">
<div class="gb-range-header"></div>
</div>
<div widget-name="region-selector">
<div class="gb-ideo-region-wrap">
<div class="gb-slider-wrap" title="Right click for help menu">
<div class="gb-slider"><div></div></div>
<div class="gb-hair"><div></div></div>
</div>
<div class="gb-ideo-region">
</div>
</div>
</div>
<div widget-name="exon-navigator">
<div class="gb-exon-navigator">
<div class="gb-exon-wrap gb-no-genes gb-no-track gb-hidden">
<div class="gb-exon-mask-wrap">
<div class="gb-exon-mask"></div>
</div>
<div class="gb-exon-track">
<span title="Select gene track" class="gb-exon-cell">
<a href="#" class="gb-exon-track-menu">&#x2756;</a>
</span>
</div>
<div class="gb-exon-body">
<span class="gb-exon-gene-wrap">
<div class="gb-exon-genes">
<span class="gb-exon-gene-body">
<div class="gb-exon-set">
<span class="gb-exon-cell">
<a href="#" class="gb-exon-menu gb-menu-mark">Region</a>
</span>
<span class="gb-exon-cell gb-exon-gene-set">
<span class="gb-header">Gene</span>
<span class="gb-gene-cell">
<span class="gb-exon-gene-go gb-prev" title="Previous gene"></span>
<select></select>
<span class="gb-exon-gene-go gb-next" title="Next gene"></span>
</span>
</span>
</div>
</span>
<span class="gb-exon-split"></span>
</div>
</span>
<span class="gb-exon-transcript-wrap">
<span class="gb-exon-cell gb-exon-transcript-set">
<span class="gb-header"></span>
<span class="gb-transcript-cell">
<select></select>
</span>
</span>
<span class="gb-exon-page-wrap">
<div class="gb-exon-details-wrap gb-no-print">
<span class="gb-exon-page-details"></span>
</div>
<div class="gb-exon-page-exons gb-no-print">
<span class="gb-exon-page-go gb-prev" title="Select previous exon"></span>
<span class="gb-exon-page-go gb-next" title="Select next exon"></span>
<span class="gb-exon-page">
<div class="gb-exon-page-body"></div>
<div class="gb-exon-slider">
<div></div>
</div>
</span>
</div>
</span>
<span class="gb-exon-page-msg">No exons</span>
</span>
</div>
<div class="gb-exon-gene-spare">
<div>
<span class="gb-exon-flank gb-left">
<a href="#" title="Previous gene out of view" class="gb-no-gene"></a>
</span>
<span class="gb-exon-msg">Exon Navigator</span>
<span class="gb-exon-flank gb-right">
<a href="#" title="Next gene out of view" class="gb-no-gene"></a>
</span>
</div>
</div>
</div>
</div>
</div>
<div widget-name="blast-view">
<div class="gb-blast-view gb-empty gb-hidden">
<div>
<div class="gb-blast-top">
<div>
<span class="gb-blast-help" help_id="blast-inspector" title="Blast Inspector help"></span>
<span title="Close inspector"></span>
</div>
<h4>
<span></span>
<span>BLAST Alignment Inspector</span>
<span></span>
<span></span>
</h4>
</div>
<div class="gb-blast-view-data">
<div class="gb-blast-header">
<div></div>
<div>
<div class="gb-blast-group-wrap">
<div class="gb-blast-group-header"></div>
</div>
</div>
</div>
<div class="gb-blast-hits"></div>
</div>
<div class="gb-comment"></div>
</div>
<div class="gb-divider"></div>
</div>
</div>
<div class="gb-hub-status" widget-name="hub-status">
<div></div>
</div>
<div config="appname:'DataViewer', toolbar:'-s'" widget-name="seqview-wrap">
<div class="seqview-wrap" options="toolbar:'-s'">
<div></div>
</div>
</div>
</div>
</div>
</div>
<div class="gb-page-content-bottom">
</div>
</div>
<div class="gdv-status"></div>
<div class="gb-data-canvas">
<span></span>
<canvas>
</canvas>
</div>
</div>
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