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<title>dbSNP News and Announcements</title>
<link>https://www.ncbi.nlm.nih.gov/</link>
<description>Brief announcements highlighting recent enhancements and changes to dbSNP database.</description>
<language>en-us</language>
<pubDate>Tue, 01 Feb 2011 11:00:00 EST</pubDate>
<ttl>1440</ttl>
<image>
<url></url>
<title>The National Center for Biotechnology Information (NCBI)</title>
<link>https://www.ncbi.nlm.nih.gov/</link>
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<item>
<title>NCBI Insights: dbSNP Enhances Scalability, Data Diversity, and Accessibility</title>
<link>https://ncbiinsights.ncbi.nlm.nih.gov/2023/03/30/dbsnp-scalability-diversity-accessibility/</link>
<description>&lt;div class=&quot;ExternalClass7E04B8142157433BB12DFCFEC392C1B7&quot;&gt;&lt;p&gt;​&lt;span style=&quot;font-size&amp;#58;12pt;font-family&amp;#58;calibri, sans-serif;&quot;&gt;&lt;a href=&quot;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2023/03/30/dbsnp-scalability-diversity-accessibility/&quot;&gt;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2023/03/30/dbsnp-scalability-diversity-accessibility/&lt;/a&gt;&lt;/span&gt;​&lt;br&gt;&lt;/p&gt;</description>
<pubDate>Fri, 31 Mar 2023 09:00:00 EST</pubDate>
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<title>dbSNP Build 156 Release</title>
<link>https://www.ncbi.nlm.nih.gov/snp/</link>
<description>&lt;div class=&quot;ExternalClass9126F3E72ECE4DEDB96F313CB07A075E&quot;&gt;&lt;p&gt;​&lt;br&gt;&lt;/p&gt;&lt;p&gt;Build 156 of dbSNP (https&amp;#58;//www.ncbi.nlm.nih.gov/snp/) with over 1.1 billion RefSNP (rs) records across the human genome is now available. Build 156 includes data from 1000Genomes, TOPMed, gnomAD, and many other submitters, as well as NCBI ALFA release 2 with over 900 million rs and allele frequencies from dbGaP studies. All data is open-access and unrestricted for web searching, FTP download, and API access.&lt;/p&gt;&lt;p&gt;The goal of dbSNP is to provide a comprehensive reference set of human single nucleotide variants and small-scale insertions and deletions, as well as population frequency, molecular consequence, ClinVar clinical interpretation, publication, and genomic and RefSeq mapping information for both common and clinical mutations. More information on dbSNP somatic mutations can be found at (&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/analysis/somatic/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/analysis/somatic/&lt;/a&gt;).&lt;/p&gt;&lt;p&gt;dbSNP would like to thank all of the submitters and community members who shared their data with the larger community.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;br&gt;BUILD SUMMARY&lt;/p&gt;&lt;p&gt;==============&lt;/p&gt;&lt;p&gt;Build 156 Total RS count = 1,130,597,309 (&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/release_notes.txt&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/release_notes.txt&lt;/a&gt;)&lt;a href=&quot;https&amp;#58;//nih-my.sharepoint.com/personal/lonphan_nih_gov/Documents/Products/dbSNP/Build%20Annoucement/dbSNP_Build156.docx#_msocom_1&quot;&gt;[PL([1]&lt;/a&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;BUILD RELEASE PRODUCTS&lt;/p&gt;&lt;p&gt;==================&lt;/p&gt;&lt;p&gt;FTP download in VCF and JSON format&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez SNP search&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&lt;/a&gt;&lt;/p&gt;&lt;p&gt;RefSNP Page&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/rs268&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/rs268&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Variation Viewer&lt;/p&gt;&lt;p&gt;(&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/&lt;/a&gt;)&lt;/p&gt;&lt;p&gt;Variation Service API&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;https&amp;#58;//api.ncbi.nlm.nih.gov/variation/v0/&quot;&gt;https&amp;#58;//api.ncbi.nlm.nih.gov/variation/v0/&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;HELP RESOURCES&amp;#58;&lt;/p&gt;&lt;p&gt;===============&lt;/p&gt;&lt;p&gt;NCBI ALFA&amp;#58; &lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;br&gt;Webinar Videos&amp;#58;&lt;/p&gt;&lt;p&gt;Accessing ALFA and other Population Allele Frequency&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;https&amp;#58;//www.youtube.com/watch?v=wii-V39YxGk&quot;&gt;https&amp;#58;//www.youtube.com/watch?v=wii-V39YxGk&lt;/a&gt;&lt;br&gt;https&amp;#58;//www.youtube.com/watch?v=5CzjOI3-qOU&lt;/p&gt;&lt;p&gt;SPDI and Variation Service&lt;/p&gt;&lt;p&gt;https&amp;#58;//www.youtube.com/watch?v=gpSI16e59ig&lt;/p&gt;&lt;p&gt;Search Help&amp;#58; &lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&lt;/a&gt;&lt;/p&gt;&lt;p&gt;About RefSNP&amp;#58; &lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/RefSNP_about&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/RefSNP_about&lt;/a&gt;&lt;/p&gt;&lt;p&gt;VCF FAQ&amp;#58; &lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/docs/snp2_human_variation_vcf/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/docs/snp2_human_variation_vcf/&lt;/a&gt;&lt;/p&gt;&lt;p&gt;JSON Spec&amp;#58; &lt;a href=&quot;https&amp;#58;//github.com/ncbi/dbsnp/blob/master/specs/refsnp_specification.yaml&quot;&gt;https&amp;#58;//github.com/ncbi/dbsnp/blob/master/specs/refsnp_specification.yaml&lt;/a&gt;&lt;/p&gt;&lt;p&gt;JSON Tutorials&amp;#58; &lt;a href=&quot;https&amp;#58;//github.com/ncbi/dbsnp/tree/master/tutorials&quot;&gt;https&amp;#58;//github.com/ncbi/dbsnp/tree/master/tutorials&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Please email &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce&quot;&gt;snp-admin at ncbi.nlm.nih.gov&lt;/a&gt; for any questions and comments.&lt;/p&gt;&lt;p&gt;Regards,&lt;/p&gt;&lt;p&gt;dbSNP Team&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;a href=&quot;https&amp;#58;//nih-my.sharepoint.com/personal/lonphan_nih_gov/Documents/Products/dbSNP/Build%20Annoucement/dbSNP_Build156.docx#_msoanchor_1&quot;&gt;[PL([1]&lt;/a&gt;Need new number​&lt;br&gt;&lt;/p&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;</description>
<category>genomic genetic variation</category>
<pubDate>Mon, 30 Jan 2023 13:00:00 EST</pubDate>
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<title>dbSNP Human Build 155 Release (&gt;1 Billion RS)</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2021q2/000229.html</link>
<description>&lt;div class=&quot;ExternalClassBCCB9D604BE8494A999B1779B2A7E7DB&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;pre style=&quot;white-space&amp;#58;pre-wrap;color&amp;#58;#000000;&quot;&gt;dbSNP (&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/&lt;/a&gt;) is pleased to announce the release of Build 155 and reaching the milestone of over 1 billion RefSNP (rs) records. Build 155 includes NCBI ALFA release 2 with over 900 million rs and allele frequency from dbGaP studies along with data from TopMed, GnomAD, and many other submitters. All data are available as open-access without restrictions for searching on the web, FTP download, and API access.&#10;&#10;dbSNP aim is to provide a comprehensive reference set of human single nucleotide variations and small-scale insertions and deletions along with population frequency, molecular consequence, ClinVar clinical significance, publication, and genomic and RefSeq mapping information for both common variations and clinical mutations. Additional information on somatic mutations in dbSNP can be found here (&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/analysis/somatic/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/analysis/somatic/&lt;/a&gt;).&#10;&#10;dbSNP would like to thank the many submitters and members of the community that provided their data for sharing with the broader community and helping dbSNP achieved this significant milestone.&#10;&#10;&#10;BUILD SUMMARY&#10;&#10;==============&#10;&#10;Build 155 Total RS count = 1,085,850,277 (&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/release_notes.txt&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/release_notes.txt&lt;/a&gt;)&#10;&#10;&#10;&#10;BUILD RELEASE PRODUCTS&#10;&#10;==================&#10;&#10;FTP download in VCF and JSON format&#10;&#10;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/&lt;/a&gt;&#10;&#10;Entrez SNP search&#10;&#10;&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&lt;/a&gt;&#10;&#10;RefSNP Page&#10;&#10;&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/rs268&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/rs268&lt;/a&gt;&#10;&#10;Variation Viewer&#10;&#10;(&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/&lt;/a&gt;)&#10;&#10;Variation Service API&#10;&#10;&lt;a href=&quot;https&amp;#58;//api.ncbi.nlm.nih.gov/variation/v0/&quot;&gt;https&amp;#58;//api.ncbi.nlm.nih.gov/variation/v0/&lt;/a&gt;&#10;&#10;&#10;&#10;HELP RESOURCES&amp;#58;&#10;&#10;===============&#10;&#10;NCBI ALFA&amp;#58; &lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/&lt;/a&gt;&#10;&#10;&#10;Webinar Videos&amp;#58;&#10;&#10;Accessing Population Allele Frequency&#10;&#10;SPDI and Variation Service&#10;&#10;&#10;Search Help&amp;#58; &lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&lt;/a&gt;&#10;&#10;About RefSNP&amp;#58; &lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/RefSNP_about&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/RefSNP_about&lt;/a&gt;&#10;&#10;VCF FAQ&amp;#58; &lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/docs/snp2_human_variation_vcf/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/docs/snp2_human_variation_vcf/&lt;/a&gt;&#10;&#10;JSON Spec&amp;#58; &lt;a href=&quot;https&amp;#58;//github.com/ncbi/dbsnp/blob/master/specs/refsnp_specification.yaml&quot;&gt;https&amp;#58;//github.com/ncbi/dbsnp/blob/master/specs/refsnp_specification.yaml&lt;/a&gt;&#10;&#10;JSON Tutorials&amp;#58; &lt;a href=&quot;https&amp;#58;//github.com/ncbi/dbsnp/tree/master/tutorials&quot;&gt;https&amp;#58;//github.com/ncbi/dbsnp/tree/master/tutorials&lt;/a&gt;&#10;&#10;Please email &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce&quot;&gt;snp-admin at ncbi.nlm.nih.gov&lt;/a&gt; for any questions and comments.&#10;&#10;Regards,&#10;&#10;dbSNP Team&#10;&lt;/pre&gt;&lt;br&gt;​&lt;br&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;</description>
<pubDate>Tue, 29 Jun 2021 14:00:00 EST</pubDate>
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<title>dbSNP Human Build 154 Release + ALFA data</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2020q2/000220.html</link>
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class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;(&lt;/span&gt;&lt;/span&gt;&lt;a class=&quot;Hyperlink SCXW75229812 BCX0&quot; href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/&quot; target=&quot;_blank&quot; rel=&quot;noreferrer noopener&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;inherit;&quot;&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;)&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;span class=&quot;SpellingError SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-repeat&amp;#58;repeat-x;background-position&amp;#58;left bottom;&quot;&gt;RefSNP&lt;/span&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#160;(&lt;/span&gt;&lt;span class=&quot;SpellingError SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-repeat&amp;#58;repeat-x;background-position&amp;#58;left bottom;&quot;&gt;rs&lt;/span&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;) and allele frequency.&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun EmptyTextRun SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;/span&gt;&lt;a class=&quot;Hyperlink SCXW75229812 BCX0&quot; href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/&quot; target=&quot;_blank&quot; rel=&quot;noreferrer noopener&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;inherit;&quot;&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun EmptyTextRun SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;BUILD SUMMARY&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;==============&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;Build&amp;#160;&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;154&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;Total RS count&amp;#160;&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;=&amp;#160;&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;729&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;,&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; 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style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; 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class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;Entrez&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#58;&amp;#160;&lt;/span&gt;&lt;/span&gt;&lt;a class=&quot;Hyperlink SCXW75229812 BCX0&quot; href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/&quot; target=&quot;_blank&quot; rel=&quot;noreferrer noopener&quot; 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style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;/li&gt;&lt;li data-leveltext=&quot;o&quot; data-font=&quot;Courier New&quot; data-listid=&quot;7&quot; aria-setsize=&quot;-1&quot; data-aria-posinset=&quot;2&quot; role=&quot;listitem&quot; data-aria-level=&quot;2&quot; class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px 0px 0px 72px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;display&amp;#58;block;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;vertical-align&amp;#58;baseline;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;Help&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#58;&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/span&gt;&lt;a class=&quot;Hyperlink SCXW75229812 BCX0&quot; href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&quot; target=&quot;_blank&quot; rel=&quot;noreferrer noopener&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;inherit;&quot;&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun EmptyTextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;/li&gt;&lt;/ul&gt;&lt;div class=&quot;SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; 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style=&quot;margin-bottom&amp;#58;0px;margin-left&amp;#58;24px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;text-indent&amp;#58;24px;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun EmptyTextRun SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;/span&gt;&lt;a class=&quot;Hyperlink SCXW75229812 BCX0&quot; href=&quot;https&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/&quot; target=&quot;_blank&quot; rel=&quot;noreferrer noopener&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;inherit;&quot;&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;https&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun EmptyTextRun SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559685&amp;quot;&amp;#58;360,&amp;quot;335559731&amp;quot;&amp;#58;360,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;ListContainerWrapper SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;&quot;&gt;&lt;ul class=&quot;BulletListStyle1 SCXW75229812 BCX0&quot; role=&quot;list&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;font-family&amp;#58;verdana;&quot;&gt;&lt;li data-leveltext=&quot;&quot; data-font=&quot;Symbol&quot; data-listid=&quot;5&quot; aria-setsize=&quot;-1&quot; data-aria-posinset=&quot;0&quot; role=&quot;listitem&quot; data-aria-level=&quot;1&quot; class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px 0px 0px 24px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;display&amp;#58;block;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;vertical-align&amp;#58;baseline;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;SpellingError SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-repeat&amp;#58;repeat-x;background-position&amp;#58;left bottom;&quot;&gt;RefSNP&lt;/span&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;Page&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;/li&gt;&lt;/ul&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;text-indent&amp;#58;48px;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun EmptyTextRun SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;/span&gt;&lt;a class=&quot;Hyperlink SCXW75229812 BCX0&quot; 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data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559731&amp;quot;&amp;#58;720,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;div class=&quot;ListContainerWrapper SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;&quot;&gt;&lt;ul class=&quot;BulletListStyle1 SCXW75229812 BCX0&quot; role=&quot;list&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;font-family&amp;#58;verdana;&quot;&gt;&lt;li data-leveltext=&quot;&quot; data-font=&quot;Symbol&quot; data-listid=&quot;4&quot; aria-setsize=&quot;-1&quot; data-aria-posinset=&quot;0&quot; role=&quot;listitem&quot; data-aria-level=&quot;1&quot; class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px 0px 0px 24px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;display&amp;#58;block;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;vertical-align&amp;#58;baseline;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;Variation Viewer&amp;#160;&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;/li&gt;&lt;/ul&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;margin-left&amp;#58;24px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;text-indent&amp;#58;24px;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;(&lt;/span&gt;&lt;/span&gt;&lt;a class=&quot;Hyperlink SCXW75229812 BCX0&quot; href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/&quot; target=&quot;_blank&quot; rel=&quot;noreferrer noopener&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;inherit;&quot;&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; 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class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;Filter and facet to retrieve all SNPs with ALFA frequency&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#160;(&lt;/span&gt;&lt;/span&gt;&lt;a class=&quot;Hyperlink SCXW75229812 BCX0&quot; 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style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;inherit;&quot;&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;https&amp;#58;//youtu.be/wii-V39YxGk&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;)&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; 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class=&quot;TextRun EmptyTextRun SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;/span&gt;&lt;a class=&quot;Hyperlink SCXW75229812 BCX0&quot; href=&quot;https&amp;#58;//www.youtube.com/watch?v=5CzjOI3-qOU&quot; target=&quot;_blank&quot; rel=&quot;noreferrer noopener&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;inherit;&quot;&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;Accessing Population Allele Frequency&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#160;(&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;https&amp;#58;//www.youtube.com/watch?v=5CzjOI3-qOU&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;)&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;/li&gt;&lt;li data-leveltext=&quot;&quot; data-font=&quot;Symbol&quot; data-listid=&quot;8&quot; aria-setsize=&quot;-1&quot; data-aria-posinset=&quot;3&quot; role=&quot;listitem&quot; data-aria-level=&quot;1&quot; class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px 0px 0px 24px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;display&amp;#58;block;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;vertical-align&amp;#58;baseline;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun EmptyTextRun SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;/span&gt;&lt;a class=&quot;Hyperlink SCXW75229812 BCX0&quot; href=&quot;https&amp;#58;//www.youtube.com/watch?v=gpSI16e59ig&quot; target=&quot;_blank&quot; rel=&quot;noreferrer noopener&quot; 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style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#160;(&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;https&amp;#58;//www.youtube.com/watch?v=gpSI16e59ig&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;)&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;/li&gt;&lt;/ul&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; 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href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&quot; target=&quot;_blank&quot; rel=&quot;noreferrer noopener&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;inherit;&quot;&gt;&lt;span data-contrast=&quot;none&quot; class=&quot;TextRun Underlined SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;color&amp;#58;#0563c1;text-decoration-line&amp;#58;underline;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-charstyle=&quot;Hyperlink&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/entrez_help/&lt;/span&gt;&lt;/span&gt;&lt;/a&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun EmptyTextRun SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;About&amp;#160;&lt;/span&gt;&lt;span class=&quot;SpellingError SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-repeat&amp;#58;repeat-x;background-position&amp;#58;left bottom;&quot;&gt;RefSNP&lt;/span&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#58;&amp;#160;&lt;/span&gt;&lt;/span&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/docs/RefSNP_about&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;VCF FAQ&amp;#58; https&amp;#58;//www.ncbi.nlm.nih.gov/variation/docs/snp2_human_variation_vcf/&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;JSON Spec&amp;#58; https&amp;#58;//github.com/ncbi/dbsnp/blob/master/specs/refsnp_specification.yaml&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;JSON Tutorials&amp;#58; https&amp;#58;//github.com/ncbi/dbsnp/tree/master/tutorials&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;SpellingError SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-repeat&amp;#58;repeat-x;background-position&amp;#58;left bottom;&quot;&gt;dbSNP&lt;/span&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;span class=&quot;SpellingError SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-repeat&amp;#58;repeat-x;background-position&amp;#58;left bottom;&quot;&gt;RefSNP&lt;/span&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&amp;#160;page&amp;#58; https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/09/12/ncbi-newly-designed-dbsnp-refsnp-report-alpha/&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;Please email snp-admin@ncbi.nlm.nih.gov for any questions and comments.&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; style=&quot;margin-bottom&amp;#58;0px;padding&amp;#58;0px;vertical-align&amp;#58;baseline;background-color&amp;#58;transparent;color&amp;#58;windowtext;&quot;&gt;&lt;span data-contrast=&quot;auto&quot; class=&quot;TextRun SCXW75229812 BCX0&quot; lang=&quot;EN-US&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;line-height&amp;#58;18px;&quot;&gt;&lt;span class=&quot;NormalTextRun SCXW75229812 BCX0&quot; data-ccp-parastyle=&quot;Plain Text&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;background-color&amp;#58;inherit;&quot;&gt;Regards,&lt;/span&gt;&lt;/span&gt;&lt;span class=&quot;EOP SCXW75229812 BCX0&quot; data-ccp-props=&quot;&amp;#123;&amp;quot;201341983&amp;quot;&amp;#58;0,&amp;quot;335559739&amp;quot;&amp;#58;0,&amp;quot;335559740&amp;quot;&amp;#58;240&amp;#125;&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;font-size&amp;#58;11pt;line-height&amp;#58;18px;font-family&amp;#58;calibri, calibri_msfontservice, sans-serif;&quot;&gt;&amp;#160;&lt;/span&gt;&lt;/p&gt;&lt;div class=&quot;OutlineElement Ltr SCXW75229812 BCX0&quot; style=&quot;margin&amp;#58;0px;padding&amp;#58;0px;overflow&amp;#58;visible;cursor&amp;#58;text;clear&amp;#58;both;direction&amp;#58;ltr;color&amp;#58;#000000;font-family&amp;#58;&amp;quot;segoe ui&amp;quot;, &amp;quot;segoe ui web&amp;quot;, arial, verdana, sans-serif;font-size&amp;#58;12px;background-color&amp;#58;#ffffff;&quot;&gt;&lt;p class=&quot;Paragraph SCXW75229812 BCX0&quot; 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<pubDate>Mon, 01 Jun 2020 15:00:00 EST</pubDate>
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<item>
<title>Thank You Valued dbSNP Users</title>
<link>https://www.ncbi.nlm.nih.gov/snp/</link>
<description>&lt;div class=&quot;ExternalClassB25322A2ADE6441C938145B06EE0A2EE&quot;&gt;&lt;p&gt;​Dear dbSNP Users,&lt;/p&gt;&lt;p&gt;Once in a while, it&#39;s nice to send our users and submitters a little thank you. dbSNP is over 20 years old now and it is due to our users that submitted data, using our services and providing feedback that we have achieved this milestone and continue to serve the global community. dbSNP&#39;s open-access data and services have become a standard, with many of our users coming to us multiple times each day through the web and FTP! We have much more to do and we are committed to keeping serving you. But today, we thank you for being part of our sequence variation community that support open-access data exchange, tools development, and research into a broad range of biological problems.&lt;/p&gt;&lt;p&gt;dbSNP today is the world largest open-access human variation archive with nearly 2 billion human submitted SNP (ss) records from thousands of submitters that clustered to 674 million Reference SNP (rs) records (&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=all%5bsb%5d&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=all%5Bsb%5D&lt;/a&gt;). In addition, dbSNP have allele frequency for more than 500 million rs. The rs numbers are cited in more than 50 thousand publications for a broad range of research and subjects (&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/pubmed/?term=pubmed_snp_cited%5bsb%5d&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/pubmed/?term=pubmed_snp_cited%5Bsb%5D&lt;/a&gt;). We couldn&#39;t have done it without you!&lt;/p&gt;&lt;p&gt;As we celebrate our growth over 20 years, we would love to hear more from you. Write to us (&lt;a href=&quot;mailto&amp;#58;snp-admin@ncbi.nlm.nih.gov&quot;&gt;snp-admin@ncbi.nlm.nih.gov&lt;/a&gt;) about how dbSNP data and the use of Reference SNP (rs) numbers have helped you. This could be citing an RS number in a publication or report of interesting research, developing open-source or commercial tools or pipeline, or a case study of patient care.&lt;/p&gt;&lt;p&gt;We would love to share your message. Your feedback to us will help us improve our customer&#39;s experiences in the future. It is also a way for us to know how we helped and where we can do more. We know your time is valuable, and we appreciate your attention. Again, we look forward to continuing serving you and thank you for your ongoing support.&lt;/p&gt;&lt;p&gt;Regards,&lt;/p&gt;&lt;p&gt;dbSNP Team&lt;br&gt;&lt;/p&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;</description>
<pubDate>Thu, 01 Aug 2019 15:00:00 EST</pubDate>
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<title>NCBI Webinar: New Variation Services for Normalizing, Remapping, and Annotating Variants (Feb 6, 2019 12:00 PM - 12:30 PM EST)</title>
<link>https://bit.ly/2McN7QP</link>
<description>&lt;div class=&quot;ExternalClassA2C53BC7E70C40658341481F55F3E50D&quot;&gt;&lt;p&gt;​New Variation Services for Normalizing, Remapping, and Annotating Variants&lt;/p&gt;&lt;p&gt;Date&amp;#58; Wednesday, February 6, 2019&lt;/p&gt;&lt;p&gt;Time&amp;#58; 12&amp;#58;00 PM - 12&amp;#58;30 PM EST&lt;br&gt;&lt;/p&gt;&lt;p&gt;Registration&amp;#58;&amp;#160;&amp;#160;&lt;a href=&quot;https&amp;#58;//bit.ly/2McN7QP&quot;&gt;https&amp;#58;//bit.ly/2McN7QP&lt;/a&gt;&lt;br&gt;&lt;/p&gt;&lt;br&gt;&lt;p&gt;In this webinar you will learn how to use a new set of NCBI variation services (&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/services/&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/variation/services/&lt;/a&gt;) that rely on a variant data model called SPDI (Sequence Position Deletion Insertion). These services and data model allow you to inter-convert, map and disambiguate variants in standard formats (RefSNP accessions, HGVS and VCF). Unlike many current variant notation systems, SPDI provides unambiguous, machine-readable definitions of variants. SPDI not only powers SNP build and mapping procedures at NCBI but also our variant sensors that are active in the global search and ClinVar. These services and notation system provide valuable new tools for people who work with sequence variants.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;</description>
<pubDate>Tue, 15 Jan 2019 16:00:00 EST</pubDate>
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<item>
<title>dbSNP Human Build 152: Official Product Release from the New Build System</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2018q4/000193.html</link>
<description>&lt;div class=&quot;ExternalClassA15BEADF5CA94138897775208BBFE254&quot;&gt;&lt;p&gt;&lt;/p&gt;&lt;p&gt;dbSNP Build 152 using the new build system (http&amp;#58;//bit.ly/2QaAvz9) with SPDI variant notation (http&amp;#58;//bit.ly/2QChDrS) is now available on FTP site and the new RefSNP web page.&amp;#160; This release is a small incremental update from dbSNP build 151 and is provided for users to begin testing and integrating the new build products into their workflow.&amp;#160; &amp;#160;&lt;br&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;BUILD SUMMARY&lt;/p&gt;&lt;p&gt;==============&lt;/p&gt;&lt;p&gt;Build 151 (old system) = 660,773,127&lt;/p&gt;&lt;p&gt;Build 152 (new system) = 655,379,774 (live RS with improved clustering – see notes below)&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/redesign/latest_release/release_notes.txt&quot;&gt;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/redesign/latest_release/release_notes.txt&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;RELEASED PRODUCTS&lt;/p&gt;&lt;p&gt;==================&lt;/p&gt;&lt;p&gt;* FTP download in VCF and JSON formats&amp;#58;&lt;/p&gt;&lt;p&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/latest_release/&lt;/p&gt;&lt;p&gt;* Search by RSID and browse RefSNP content.&lt;/p&gt;&lt;p&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; https&amp;#58;//www.ncbi.nlm.nih.gov/snp/rs268&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;HELP RESOURCES&amp;#58;&lt;/p&gt;&lt;p&gt;===============&lt;/p&gt;&lt;p&gt;VCF FAQ&amp;#58; https&amp;#58;//www.ncbi.nlm.nih.gov/variation/docs/snp2_human_variation_vcf/&lt;/p&gt;&lt;p&gt;JSON Spec&amp;#58; https&amp;#58;//github.com/ncbi/dbsnp/blob/master/specs/refsnp_specification.yaml&lt;/p&gt;&lt;p&gt;JSON Tutorials&amp;#58; https&amp;#58;//github.com/ncbi/dbsnp/tree/master/tutorials&lt;/p&gt;&lt;p&gt;dbSNP RefSNP page&amp;#58; https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/09/12/ncbi-newly-designed-dbsnp-refsnp-report-alpha/&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;RELEASE NOTES&amp;#58;&lt;/p&gt;&lt;p&gt;===============&lt;/p&gt;&lt;p&gt;*&amp;#160; Build 152 include the following changes and improvements from Build 151&amp;#58;&lt;/p&gt;&lt;p&gt;*&amp;#160; RS clustering using SPDI canonical allele notation.&lt;/p&gt;&lt;p&gt;*&amp;#160; NCBI Variant Overprecision Correction that left shift variants in repeated regions and merged RS.&amp;#160; This reduced redundant records and fewer RSIDS in the dataset.&lt;/p&gt;&lt;p&gt;*&amp;#160; dbSNP Entrez search (https&amp;#58;//www.ncbi.nlm.nih.gov/snp/) is still based on human Build 151 and will be updated to Build 152 later with new changes to eUtils.&amp;#160;&amp;#160; When the migration is completed all current eUtils report formats (RS docsum XML, ASN.1, FASTA, and FLAT text) will be retired.&amp;#160;&amp;#160; Only the new eSummary XML report will be supported.&amp;#160; Sample eSummary XML and specs are on available for review on GitHub (https&amp;#58;//github.com/ncbi/dbsnp/tree/master/specs).&lt;/p&gt;&lt;p&gt;*&amp;#160; The earlier beta release based on Build 151 is archived here (&lt;a href=&quot;https&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/archive/b151/&quot;&gt;https&amp;#58;//ftp.ncbi.nih.gov/snp/redesign/archive/b151/&lt;/a&gt;)&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;The next build 153 with major content updates will be in Q2 2019.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Please email snp-admin@ncbi.nlm.nih.gov for any questions and comments.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Regards,&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;dbSNP Team&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;</description>
<pubDate>Mon, 10 Dec 2018 22:00:00 EST</pubDate>
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<title>ANNOUNCEMENT: dbSNP Human Build 151 Double in Size to 660 Million Reference SNP (rs)</title>
<link>https://www.ncbi.nlm.nih.gov/projects/SNP/</link>
<description>&lt;div class=&quot;ExternalClass170972ABC5DA4BF7954336B2BEF568AB&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;&lt;strong&gt;&amp;#160;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;ANNOUNCEMENT&amp;#58; dbSNP Human Build 151 Double in Size to 660 Million Reference SNP (rs)&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;&amp;#160;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;&amp;#160;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;April 24, 2018&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;&amp;#160;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;==============================================================================&lt;/p&gt;&lt;p&gt;&lt;strong&gt;REMINDER&amp;#58; Important dbSNP changes and notifications &lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2018q2/000186.html&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;==============================================================================&lt;/p&gt;&lt;p&gt;&lt;strong&gt;&amp;#160;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;dbSNP Build 151 Summary&amp;#58;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;dbSNP human build 151 for both GRCh38.p7 and GRCh37.p13 assemblies is now available.&amp;#160; This build include new submissions from TopMed (&lt;a href=&quot;https&amp;#58;//www.nhlbi.nih.gov/research/resources/nhlbi-precision-medicine-initiative/topmed&quot;&gt;https&amp;#58;//www.nhlbi.nih.gov/research/resources/nhlbi-precision-medicine-initiative/topmed&lt;/a&gt;) and GnomAD (&lt;a href=&quot;http&amp;#58;//gnomad.broadinstitute.org/about&quot;&gt;http&amp;#58;//gnomad.broadinstitute.org/about&lt;/a&gt;) which more than double the number of available dbSNP reference SNP (rs) from 324 million to 660 million.&amp;#160;&amp;#160; Allele frequency data are available for more than 500 million rs (see summary below) with most being rare (MAF &amp;lt; =0.001).&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Build Summary&amp;#58;&lt;/strong&gt;&lt;/p&gt;&lt;table width=&quot;100%&quot; class=&quot;ms-rteTable-default&quot; cellspacing=&quot;0&quot;&gt;&lt;tbody&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot; style=&quot;width&amp;#58;33.33%;&quot;&gt;&lt;strong&gt;dbSNP ID&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot; style=&quot;width&amp;#58;33.33%;&quot;&gt;&lt;strong&gt;Build Total&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot; style=&quot;width&amp;#58;33.33%;&quot;&gt;​&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;Total Submitted SNP (ss) - redundant&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;1,803,358,848&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;Total Reference SNP (rs) - non-redundant&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;660,773,127&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&lt;strong&gt;Genomic mapping&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&lt;strong&gt;GRCh37.p13&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&lt;strong&gt;GRCh38.p7&lt;/strong&gt;&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;Assembly&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;648,992,551&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;660,440,048&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&lt;strong&gt;Refseq Annotation&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&lt;strong&gt;GRCh37.p13&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&lt;strong&gt;GRCh38.p7&lt;/strong&gt;&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;Gene ID&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;30,194&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;38,811&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;mRNA Accession&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;106,113&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;163,679&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;Protein Accession&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;82,936&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;115,774&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;​&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&lt;strong&gt;Function Class&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&lt;strong&gt;GRCh37.p13&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&lt;strong&gt;GRCh38.p7&lt;/strong&gt;&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;CDS-INDEL&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;273,510&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;313,439&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;CDS-SYNON&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;3,366,422&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;3,650,883&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;FRAMESHIFT&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;411,981&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;424,833&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;INTRON&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;250,243,824&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;348,938,103&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;MISSENSE&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;6,938,964&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;7,506,129&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;NCRNA&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;5,669,033&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;13,602,650&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;NEARGENE-3&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;3,818,163&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;6,400,653&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;NEARGENE-5&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;15,808,046&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;25,853,318&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;SPLICE-3&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;95,699&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;117,225&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;SPLICE-5&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;111,212&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;141,498&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;STOP-GAIN&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;244,372&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;279,741&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;STOP-LOSS&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;10,913&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;13,661&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;UTR-3&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;6,129,919&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;8,668,133&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;UTR-5&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;2,419,529&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;4,640,915&lt;/td&gt;&lt;/tr&gt;&lt;/tbody&gt;&lt;/table&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;RS Allele Frequency Counts&amp;#58;&lt;/strong&gt;&lt;/p&gt;&lt;table width=&quot;100%&quot; class=&quot;ms-rteTable-default&quot; cellspacing=&quot;0&quot;&gt;&lt;tbody&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot; style=&quot;width&amp;#58;16.66%;&quot;&gt;&lt;strong&gt;Minor Allele Frequency (MAF)&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot; style=&quot;width&amp;#58;16.66%;&quot;&gt;&lt;strong&gt;TOPMED&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot; style=&quot;width&amp;#58;16.66%;&quot;&gt;&lt;strong&gt;GnomAD&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot; style=&quot;width&amp;#58;16.66%;&quot;&gt;&lt;strong&gt;1000 Genomes&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot; style=&quot;width&amp;#58;16.66%;&quot;&gt;&lt;strong&gt;ExAC&lt;/strong&gt;&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot; style=&quot;width&amp;#58;16.66%;&quot;&gt;&lt;strong&gt;GO-ESP&lt;/strong&gt;&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&amp;lt;=0.001&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;470,535,424&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;198,960,749&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;54,686,241&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;8,667,575&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;1,527,303&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&amp;gt;0.001 and &amp;lt;=0.01&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;20,069,273&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;15,967,086&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;15,944,038&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;276,851&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;197,816&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&amp;gt;0.01 and &amp;lt;0.1&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;11,410,633&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;7,940,223&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;7,852,416&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;99,605&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;99,694&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;&amp;gt;=0.1&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;8,225,418&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;5,799,895&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;6,365,867&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;85,773&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;63,191&lt;/td&gt;&lt;/tr&gt;&lt;tr&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;Total RS with Frequency&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;510,240,748&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;228,667,953&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;84,848,562&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;9,129,804&lt;/td&gt;&lt;td class=&quot;ms-rteTable-default&quot;&gt;1,888,004&lt;/td&gt;&lt;/tr&gt;&lt;/tbody&gt;&lt;/table&gt;&lt;p&gt;&lt;strong&gt;&amp;#160;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Entrez Search (see important notification #3 below)&amp;#58;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/strong&gt;&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;&amp;#160;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;FTP&amp;#58;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;GRCh37.p13&amp;#58;&lt;/p&gt;&lt;p&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b151_GRCh37p13&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;GRCh38.p7&amp;#58;&lt;/p&gt;&lt;p&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b151_GRCh38p7&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Please email snp-admin@ncbi.nlm.nih.gov for any questions, suggestions, and comments.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Regards,&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;</description>
<pubDate>Tue, 24 Apr 2018 13:00:00 EST</pubDate>
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<title>dbSNP important updates and notifications</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2018q2/000186.html</link>
<description>&lt;div class=&quot;ExternalClass32324C60F8554E1DA6DB48F03EFDE7A7&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;pre style=&quot;white-space&amp;#58;pre-wrap;color&amp;#58;#000000;&quot;&gt;Dear dbSNP Users,&#10;&#10;dbSNP is transitioning to the new design (&lt;a href=&quot;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/07/07/dbsnp-redesign-supports-future-data-expansion/&quot;&gt;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/07/07/dbsnp-redesign-supports-future-data-expansion/&lt;/a&gt;) with new products ready for testing including new JSON data files, RefSNP page, and API.&#10;&#10;&#10;&#10;1) The upcoming human Build 151 release (betweenApril-May, 2018) is the last build that dbSNP will provide relational database table dumps on the FTP site (&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/human_9606/database&quot;&gt;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/human_9606/database&lt;/a&gt;). Instead, dbSNP data will be made available as a cumulative file of RefSNP objects in the JSON format in future build releases which are available now for user’s to begin their migration and testing. Please see here for more details (&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/database/ALERT_README.txt&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/database/ALERT_README.txt&lt;/a&gt;). Tutorials for parsing JSON are available on Github (&lt;a href=&quot;https&amp;#58;//github.com/ncbi/dbsnp/tree/master/tutorials&quot;&gt;https&amp;#58;//github.com/ncbi/dbsnp/tree/master/tutorials&lt;/a&gt;).&#10;&#10;&#10;&#10;2) The new RefSNP Report Alpha can be accessed by clicking on the banner on the top right of the current dbSNP report page (&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=rs268&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=rs268&lt;/a&gt;) or directly by using the following URL as an example&amp;#58; &lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/rs268.The&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/snp/rs268.The&lt;/a&gt; link works for any rs known in the current system. The new report page will remain available in parallel with the existing dbSNP RefSNP report. More details are available on NCBI Insights (&lt;a href=&quot;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/09/12/ncbi-newly-designed-dbsnp-refsnp-report-alpha/&quot;&gt;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/09/12/ncbi-newly-designed-dbsnp-refsnp-report-alpha/&lt;/a&gt;)&#10;&#10;&#10;&#10;3) The new API (&lt;a href=&quot;https&amp;#58;//api.ncbi.nlm.nih.gov/variation/v0/&quot;&gt;https&amp;#58;//api.ncbi.nlm.nih.gov/variation/v0/&lt;/a&gt;) including a retrieval service by RS id is ready for testing and for user feedbacks (example&amp;#58; &lt;a href=&quot;https&amp;#58;//api.ncbi.nlm.nih.gov/variation/v0/beta/refsnp/328&quot;&gt;https&amp;#58;//api.ncbi.nlm.nih.gov/variation/v0/beta/refsnp/328&lt;/a&gt;). Details are available here (&lt;a href=&quot;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/02/09/new-web-services-for-comparing-and-grouping-sequence-variants/&quot;&gt;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/02/09/new-web-services-for-comparing-and-grouping-sequence-variants/&lt;/a&gt;).&#10;&#10;&#10;&#10;*******************************&#10;&#10;Retired services and non-human data.&#10;&#10;*******************************&#10;&#10;1) Entrez search are now only available for human (&lt;a href=&quot;https&amp;#58;//www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2018q1/000184.html&quot;&gt;https&amp;#58;//www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2018q1/000184.html&lt;/a&gt;) and all of the eUtils report formats (RS docsum XML and ASN.1, FASTA, and FLAT text) will be retired later this year. Only eSummary XML report will be supported.&#10;&#10;&#10;&#10;2) Batch Query Service for all organisms will be retired in 2018-Q2. User of human dbSNP data should transition to the new API.&#10;&#10;&#10;&#10;3) Non-human FTP data will be placed in the archive directory &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/archive.&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/archive.&lt;/a&gt; Please see the phase-out plan announced last year (&lt;a href=&quot;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/05/09/phasing-out-support-for-non-human-genome-organism-data-in-dbsnp-and-dbvar/&quot;&gt;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/05/09/phasing-out-support-for-non-human-genome-organism-data-in-dbsnp-and-dbvar/&lt;/a&gt;).&#10;&#10;&#10;&#10;Please email &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce&quot;&gt;snp-admin at ncbi.nlm.nih.gov&lt;/a&gt;&amp;lt;mailto&amp;#58;&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce&quot;&gt;snp-admin at ncbi.nlm.nih.gov&lt;/a&gt;&amp;gt; for any questions, suggestions, and comments.&#10;&#10;&#10;&#10;Regards,&#10;&#10;&#10;&#10;dbSNP Team&lt;br&gt;&lt;/pre&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;</description>
<pubDate>Fri, 20 Apr 2018 10:00:00 EST</pubDate>
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<title>dbSNP BUILD 151: chicken, corn, cottonwood, dog, horse, rice, sheep, soybean, and zebu</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2017q4/000183.html</link>
<description>&lt;div class=&quot;ExternalClass4C1A72E7BD2047309D72CBCC111C0513&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;&lt;strong&gt;IMPORTANT NOTIFICATIONS&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;Starting on September 1, 2017, NCBI has begun phasing out support for non-human organism data in dbSNP and dbVar.&amp;#160; Please read more here (https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/05/09/phasing-out-support-for-non-human-genome-organism-data-in-dbsnp-and-dbvar/).&amp;#160; Build 151 is the last release for non-human organisms with data updates available only on the dbSNP FTP site.&amp;#160;&amp;#160; dbSNP websites will not be updated to build 151 as NCBI start to phase out these services within a month.&lt;/p&gt;&lt;p&gt;====================================================================================&lt;/p&gt;&lt;p&gt;dbSNP Build 151 data for chicken, corn, cottonwood, dog, horse, rice, sheep, soybean, and zebu are available now on the web and FTP.&amp;#160;&amp;#160; Complete listing of organism summaries is below.&lt;/p&gt;&lt;p&gt;====================================================================================&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58; Gallus gallus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58; 9031&lt;/p&gt;&lt;p&gt;common_name&amp;#58; chicken&lt;/p&gt;&lt;p&gt;assembly&amp;#58; Gallus_gallus-5.0 (GCF_000002315.4)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 73447822&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 24278419&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/chicken_9031&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58; Zea mays&lt;/p&gt;&lt;p&gt;tax_id&amp;#58; 4577&lt;/p&gt;&lt;p&gt;common_name&amp;#58; corn&lt;/p&gt;&lt;p&gt;assembly&amp;#58; B73_RefGen_v4 (GCF_000005005.2)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 86608237&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 58915360&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/corn_4577&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58; Populus trichocarpa&lt;/p&gt;&lt;p&gt;tax_id&amp;#58; 3694&lt;/p&gt;&lt;p&gt;common_name&amp;#58; cottonwood&lt;/p&gt;&lt;p&gt;assembly&amp;#58; Poptr1_1 (GCF_000002775.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 17902170&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 12499188&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58; 2993523&lt;/p&gt;&lt;p&gt;FTP&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cottonwood_3694&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58; Canis lupus familiaris&lt;/p&gt;&lt;p&gt;tax_id&amp;#58; 9615&lt;/p&gt;&lt;p&gt;common_name&amp;#58; dog&lt;/p&gt;&lt;p&gt;assembly&amp;#58; CanFam3.1 (GCF_000002285.3)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 7436891&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 5933041&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58; 168&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58; 102&lt;/p&gt;&lt;p&gt;FTP&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/dog_9615&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58; Equus caballus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58; 9796&lt;/p&gt;&lt;p&gt;common_name&amp;#58; horse&lt;/p&gt;&lt;p&gt;assembly&amp;#58; EquCab2.0 (GCF_000002305.2)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 26271691&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 21596592&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/horse_9796&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58; Oryza sativa&lt;/p&gt;&lt;p&gt;tax_id&amp;#58; 4530&lt;/p&gt;&lt;p&gt;common_name&amp;#58; rice&lt;/p&gt;&lt;p&gt;assembly&amp;#58; IRGSP-1.0 (GCF_001433935.1)&lt;/p&gt;&lt;p&gt;(GCF_001563185.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 18978028&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 13172393&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58; 232777&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58; 14108&lt;/p&gt;&lt;p&gt;FTP&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/rice_4530&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58; Ovis aries&lt;/p&gt;&lt;p&gt;tax_id&amp;#58; 9940&lt;/p&gt;&lt;p&gt;common_name&amp;#58; sheep&lt;/p&gt;&lt;p&gt;assembly&amp;#58; Oar_v4.0 (GCF_000298735.2)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 147585261&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 63745233&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/sheep_9940&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58; Glycine max&lt;/p&gt;&lt;p&gt;tax_id&amp;#58; 3847&lt;/p&gt;&lt;p&gt;common_name&amp;#58; soybean&lt;/p&gt;&lt;p&gt;assembly&amp;#58; Glycine_max_v2.0 (GCF_000004515.4)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 40787157&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 17738956&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58; 4074388&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58; 846335&lt;/p&gt;&lt;p&gt;FTP&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/soybean_3847&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58; Bos indicus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58; 9915&lt;/p&gt;&lt;p&gt;common_name&amp;#58; zebu&lt;/p&gt;&lt;p&gt;assembly&amp;#58; Bos_indicus_1.0 (GCF_000247795.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 46252208&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 18158268&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/zebu_9915&lt;/p&gt;&lt;p&gt;------------------------------------------------------------ &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Please contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.&lt;br&gt;&lt;/p&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;</description>
<pubDate>Fri, 03 Nov 2017 11:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000057</guid>
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<title>NIH Seeks Comment on Proposal to Update Data Management of Genomic Summary Results</title>
<link>https://osp.od.nih.gov/2017/09/20/access-gsr/</link>
<description>&lt;div class=&quot;ExternalClass5F9B4DD3E213482FA6EF504BB8857A21&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;&lt;strong&gt;September 20, 2017&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;NIH Seeks Comment on Proposal to Update Data Management of Genomic Summary Results&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;&amp;#160;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;Today, the NIH issued a notice in its &lt;a href=&quot;https&amp;#58;//grants.nih.gov/grants/guide/notice-files/NOT-OD-17-110.html&quot;&gt;&lt;em&gt;Guide to Grants and Contracts&lt;/em&gt;&lt;/a&gt; seeking public comment on a proposed update to the data management of genomic summary results under the NIH Genomic Data Sharing (GDS) Policy. The proposed update to the GDS Policy&#39;s data management practices would help support NIH&#39;s goals to promote scientific advances and protect research participants&#39; privacy interests by allowing genomic summary results from most studies to be provided via a public, rapid-access model.&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;NIH is seeking public feedback regarding the proposed data management update and encourages comments from all stakeholders, and is especially interested in hearing from members of the general public, research participants, and/or the broader patient community.&amp;#160; Interested stakeholders can view the proposed update and provide comments by visiting &lt;a href=&quot;https&amp;#58;//osp.od.nih.gov/gsr-rfi/&quot;&gt;here&lt;/a&gt;.&amp;#160; Comments will be accepted until October 20, 2017.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;To learn more about the importance of this issue, please read today&#39;s &amp;quot;&lt;em&gt;Under the Poliscope&lt;/em&gt;&amp;quot; &lt;a href=&quot;https&amp;#58;//osp.od.nih.gov/2017/09/20/access-gsr/&quot;&gt;blog&lt;/a&gt; co-authored by Dr. Carrie D. Wolinetz, Acting NIH Chief of Staff and Associate Director for Science Policy, and Dr. Eric Green, Director of the National Human Genome Research Institute (NHGRI)&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Additionally, experts from OSP and NHGRI will be co-hosting a webinar on October 4, 2017, about the proposed update.&amp;#160; Further details about the webinar will be provided shortly.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;For questions please contact the NIH Office of Science Policy at &lt;a href=&quot;mailto&amp;#58;SciencePolicy@od.nih.gov&quot;&gt;SciencePolicy@od.nih.gov&lt;/a&gt; &amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;</description>
<pubDate>Thu, 21 Sep 2017 11:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000056</guid>
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<title>Newly designed dbSNP RefSNP Page (Alpha version)</title>
<link>https://ncbiinsights.ncbi.nlm.nih.gov/2017/09/12/ncbi-newly-designed-dbsnp-refsnp-report-alpha/</link>
<description>&lt;div class=&quot;ExternalClass0D7A061B26DF4874BA93D2B2BA4C90AF&quot;&gt;&lt;p&gt;NCBI dbSNP is pleased to announce a newly designed Reference SNP Report webpage (Alpha version).&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/09/12/ncbi-newly-designed-dbsnp-refsnp-report-alpha/&quot;&gt;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/09/12/ncbi-newly-designed-dbsnp-refsnp-report-alpha/&lt;/a&gt;&lt;br&gt;&lt;/p&gt;&lt;p&gt;Please use the green &#39;FEEDBACK&#39; button on the left margin of the page to share your feedbacks and comments.&lt;br&gt;&lt;/p&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;</description>
<pubDate>Tue, 12 Sep 2017 14:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000055</guid>
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<title>dbSNP BUILD 150: thale cress, chicken, corn, cow, horse, rhesus monkey, mouse, pig, sheep, zebrafish, and zebu</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2017q3/000179.html</link>
<description>&lt;div class=&quot;ExternalClass2FE4E8C69DE84ADCB3D2C8B102F81C70&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;IMPORTANT NOTIFICATIONS&lt;/p&gt;&lt;p&gt;1)&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; NCBI will phase out support for non-human organism data in dbSNP and dbVar beginning on September 1, 2017. Please read more here (&lt;a href=&quot;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/05/09/phasing-out-support-for-non-human-genome-organism-data-in-dbsnp-and-dbvar/&quot;&gt;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/05/09/phasing-out-support-for-non-human-genome-organism-data-in-dbsnp-and-dbvar/&lt;/a&gt;).&lt;/p&gt;&lt;p&gt;2)&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Over the next year, NCBI will be introducing changes to dbSNP architecture to support the future expansion of human variation data (&lt;a href=&quot;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/07/07/dbsnp-redesign-supports-future-data-expansion/?campaign=announce-07072017&quot;&gt;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/07/07/dbsnp-redesign-supports-future-data-expansion/?campaign=announce-07072017&lt;/a&gt;).&amp;#160;&amp;#160;&lt;/p&gt;&lt;p&gt;3)&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Beginning early next year 2018 dbSNP will no longer provide relational database table dumps on the FTP site (&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/human_9606/database&quot;&gt;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/human_9606/database&lt;/a&gt;) or any general SQL support for future build releases. Instead, the dbSNP data will be made available as a cumulative file of RefSNP objects in the JSON format which are available now for user&#39;s to begin their migration and testing.&amp;#160;&amp;#160; Please see here for more details (&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/database/ALERT_README.txt&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/database/ALERT_README.txt&lt;/a&gt;).&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;====================================================================================&lt;/p&gt;&lt;p&gt;dbSNP Build 150 data for thale cress, chicken, corn, cow, horse, rhesus monkey, mouse, pig, sheep, zebrafish, and zebu are available now on the web and FTP.&amp;#160;&amp;#160; Complete listing of organisms and counts are below.&lt;/p&gt;&lt;p&gt;====================================================================================&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Arabidopsis thaliana&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 3702&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; thale cress&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; TAIR10 (GCF_000001735.3)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 15307574&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 13412809&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 14144402&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 12343212&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/arabidopsis_3702&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/arabidopsis_3702&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3702&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3702&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Gallus gallus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9031&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; chicken&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Gallus_gallus-5.0 (GCF_000002315.4)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 73244003&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 24277657&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 15801391&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 2973898&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/chicken_9031&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/chicken_9031&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9031&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9031&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Zea mays&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 4577&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; corn&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; B73_RefGen_v3 (GCF_000005005.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 86608237&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 58915360&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 14478062&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 4287793&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/corn_4577&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/corn_4577&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid4577&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid4577&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Bos taurus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9913&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; cow&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Bos_taurus_UMD_3.1.1 (GCF_000003055.6)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 332061559&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 104286568&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 38236814&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 4115916&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cow_9913&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cow_9913&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9913&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9913&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Equus caballus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9796&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; horse&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; EquCab2.0 (GCF_000002305.2)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 5572718&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 5069659&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 147&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 61&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/horse_9796&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/horse_9796&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9796&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9796&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Macaca mulatta&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9544&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; rhesus monkey&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Mmul_8.0.1 (GCF_000772875.2)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 95808453&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 53929680&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 60043985&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 20509658&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/macaque_9544&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/macaque_9544&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9544&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9544&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Mus musculus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 10090&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; mouse&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; GRCm38.p4 (GCF_000001635.24)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 189214027&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 84152707&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 53477157&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 3709270&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/mouse_10090&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/mouse_10090&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid10090&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid10090&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Sus scrofa&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9823&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; pig&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Sscrofa11.1 (GCF_000003025.6)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 195656177&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 67116509&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 60179194&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 6754642&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/pig_9823&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/pig_9823&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9823&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9823&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Ovis aries&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9940&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; sheep&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Oar_v4.0 (GCF_000298735.2)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 147584937&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 63745118&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 46765481&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 9740710&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/sheep_9940&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/sheep_9940&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9940&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9940&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Danio rerio&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 7955&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; zebrafish&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; GRCz10 (GCF_000002035.5)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 18618013&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 17765748&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/zebrafish_7955&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/zebrafish_7955&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid7955&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid7955&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160; &amp;#160;&amp;#160;Bos indicus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9915&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; zebu&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Bos_indicus_1.0 (GCF_000247795.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 30533959&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 17758946&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 26146632&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 13371846&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/zebu_9915&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/zebu_9915&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9915&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9915&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;Please contact &lt;a href=&quot;mailto&amp;#58;snp-admin@ncbi.nlm.ncbi.nih.gov&quot;&gt;snp-admin@ncbi.nlm.ncbi.nih.gov&lt;/a&gt; if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;br&gt;&lt;/p&gt;&lt;p&gt;&lt;br&gt;&lt;/p&gt;</description>
<pubDate>Thu, 07 Sep 2017 17:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000054</guid>
</item>
<item>
<title>Reminder of Recent Announcements</title>
<link>https://ncbiinsights.ncbi.nlm.nih.gov/2017/07/07/dbsnp-redesign-supports-future-data-expansion/</link>
<description>&lt;div class=&quot;ExternalClass8E471A90292944E9AD5F088DF6C273EB&quot;&gt;&lt;ul&gt;&lt;li&gt;dbSNP architecture redesign supports future human variation data expansion; changes to be introduced over the next year&amp;#160;(&lt;a href=&quot;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/07/07/dbsnp-redesign-supports-future-data-expansion/&quot;&gt;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/07/07/dbsnp-redesign-supports-future-data-expansion/&lt;/a&gt;)&lt;br&gt;&lt;/li&gt;&lt;li&gt;Phasing out support for non-human genome organism data in dbSNP and dbVar (&lt;a href=&quot;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/05/09/phasing-out-support-for-non-human-genome-organism-data-in-dbsnp-and-dbvar/&quot;&gt;https&amp;#58;//ncbiinsights.ncbi.nlm.nih.gov/2017/05/09/phasing-out-support-for-non-human-genome-organism-data-in-dbsnp-and-dbvar/&lt;/a&gt;)&lt;br&gt;&lt;/li&gt;&lt;/ul&gt;</description>
<pubDate>Tue, 05 Sep 2017 15:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000053</guid>
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<item>
<title>NCBI to phase out support for non-human organism data in dbSNP and dbVar</title>
<link>https://go.usa.gov/x5MUQ</link>
<description>&lt;div class=&quot;ExternalClassA43DF647DA41452CA86A17C886A11C2B&quot;&gt;&lt;p&gt;​dbSNP and dbVar archive, process, display and report information related to germline and somatic variations from multiple species. These two databases have grown rapidly as sequencing and other discovery technologies have evolved, and now contain nearly two billion variants from over 360 species.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Based on projected growth and the resources required to archive and distribute the data, continued support for all organisms will become unsustainable for NCBI in the near future. Therefore, NCBI will phase out support for all non-human organisms in dbSNP and dbVar, and will support only human variation.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;NCBI will phase out support for non-human organisms in dbSNP and dbVar following this timeline&amp;#58;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;September 1, 2017 – dbSNP and dbVar stop accepting non-human variant data submissions&lt;/p&gt;&lt;p&gt;November 1, 2017 – dbSNP and dbVar interactive websites and related NCBI services stop presenting non-human variant data. The data will, however, continue to be available for download on the dbSNP and dbVar FTP sites.&lt;/p&gt;&lt;p&gt;Any non-human data that is already in the databases or that is submitted before September 1, 2017 will continue to be available via the dbSNP and dbVar FTP download sites.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;If you want to submit non-human variation data now or after September 1, 2017, European Bioinformatics Institute (EBI) – one of our partners in the International Nucleotide Sequence Database (INSDC) – is accepting these data in the European Variation Archive (&lt;a href=&quot;http&amp;#58;//www.ebi.ac.uk/eva/&quot;&gt;http&amp;#58;//www.ebi.ac.uk/eva/&lt;/a&gt;).&amp;#160;&amp;#160; Please see the agreement between NCBI and EBI for sharing the management of genetic variation data (&lt;a href=&quot;http&amp;#58;//www.ebi.ac.uk/about/news/press-releases/eva-issues-long-term-ids-non-human-variants&quot;&gt;http&amp;#58;//www.ebi.ac.uk/about/news/press-releases/eva-issues-long-term-ids-non-human-variants&lt;/a&gt;).&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Finally, we would like to thank all the submitters and users who have supported dbSNP and dbVar throughout the years.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;</description>
<pubDate>Tue, 16 May 2017 14:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000052</guid>
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<item>
<title>ANNOUNCEMENT: dbSNP Human Build 150 Double in Size to 324 Million Reference SNP (rs)</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/</link>
<description>&lt;div class=&quot;ExternalClassC71539C69BBC47B79A9B44A607B77B40&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;&lt;strong&gt;&amp;#160;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;ANNOUNCEMENT&amp;#58; dbSNP Human Build 150 Double in Size to 324 Million Reference SNP (rs)&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;April 6, 2017&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;dbSNP human build 150 for both GRCh38.p7 and GRCh37.p13 assemblies is now available.&amp;#160; This build includes new submissions from TopMed (&lt;a href=&quot;https&amp;#58;//www.nhlbi.nih.gov/research/resources/nhlbi-precision-medicine-initiative/topmed&quot;&gt;https&amp;#58;//www.nhlbi.nih.gov/research/resources/nhlbi-precision-medicine-initiative/topmed&lt;/a&gt;) and HLI (&lt;a href=&quot;http&amp;#58;//www.humanlongevity.com/&quot;&gt;http&amp;#58;//www.humanlongevity.com/&lt;/a&gt;) which more than double the number of available dbSNP reference SNP (rs) from 154 million to 324 million.&amp;#160;&amp;#160; The TopMed data included allele frequency data for 163M rs (see note #3 below).&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Summary&amp;#58;&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;Organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Homo sapiens&lt;/p&gt;&lt;p&gt;Tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9606&lt;/p&gt;&lt;p&gt;Common_name&amp;#58;&amp;#160; human&lt;/p&gt;&lt;p&gt;Assembly&amp;#58; &amp;#160;&amp;#160;&amp;#160;&amp;#160;GRCh38.p7 (GCF_000001405.33)&lt;/p&gt;&lt;p&gt;Total_ss_cnt&amp;#58; 907237763&lt;/p&gt;&lt;p&gt;Total_rs_cnt&amp;#58; 325658303&lt;/p&gt;&lt;p&gt;New_ss_cnt&amp;#58;&amp;#160;&amp;#160; 349297803&lt;/p&gt;&lt;p&gt;New_rs_cnt&amp;#58;&amp;#160;&amp;#160; 171451449&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9606&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9606&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;====================================================================================&lt;/p&gt;&lt;p&gt;&lt;strong&gt;IMPORTANT NOTIFICATION FOR SQL DATABASE USERS&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;Beginning early next year 2018 dbSNP will no longer provide relational database table dumps on the FTP site (&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/human_9606/database&quot;&gt;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/human_9606/database&lt;/a&gt;) or any general SQL support for future build releases. Instead, the dbSNP data will be made available as a cumulative file of RefSNP objects in the JSON format which are available now for user&#39;s to begin their migration and testing.&amp;#160;&amp;#160; Please see here for more details (ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/database/ALERT_README.txt).&lt;/p&gt;&lt;p&gt;====================================================================================&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Notes&amp;#58; &lt;/strong&gt;&lt;/p&gt;&lt;ul&gt;&lt;li&gt;Submission from HLI were submitted on GRCh38 coordinates and because dbSNP pipeline does not support mapping backward to previous assembly the rs for these will not appear in the VCF based on GRCh37.&amp;#160;&amp;#160; We will investigate remapping from GRCh38 to GRCh37 and will provide updates.&amp;#160; &amp;#160;&amp;#160;&lt;/li&gt;&lt;li&gt;Due the unexpected increase in the volume of human data and limitations in our systems, dbSNP had to take two temporary actions for this release&amp;#58;&lt;/li&gt;&lt;/ul&gt;&lt;ol&gt;&lt;li&gt;The annotation track &amp;quot;dbSNP Build 150 (Homo sapiens Annotation Release 108) all data&amp;quot; for RefSeq genomic sequences will be limited to variants in the gene regions only.&amp;#160; &amp;#160;This only affect tracks on NCBI Sequence Viewer and not reporting in dbSNP FTP files or on Reference SNP pages. &amp;#160;&amp;#160;We will investigate upgrading our systems to restore complete annotation across the genome and will provide updates.&lt;/li&gt;&lt;li&gt;Entrez search are only available for human build 150 and a limited number of organisms from previous builds including mouse, rat, cow, and pig.&amp;#160; We will try to restore other organisms in the next two weeks and provide updates.&amp;#160;&amp;#160; &lt;br&gt;&lt;br&gt;&amp;#160;&lt;/li&gt;&lt;/ol&gt;&lt;ul&gt;&lt;li&gt;TopMed submitted allele frequency are available in VCF on the FTP with the INFO tag &#39;TOPMED&#39;.&lt;br&gt;&lt;br&gt;&amp;#160;&lt;br&gt;&lt;br&gt;&lt;em&gt;##INFO=&amp;lt;ID=TOPMED,Number=.,Type=String,Description=&amp;quot;An ordered, comma delimited list of allele frequencies based on TOPMED, starting with the reference allele followed by alternate alleles as ordered in the ALT column. The TOPMED minor allele is the second largest value in the list.&amp;quot;&amp;gt;&lt;/em&gt;&lt;br&gt;&lt;br&gt;&amp;#160;&lt;br&gt;&lt;br&gt;GRCh37.p13&amp;#58;&lt;br&gt;&lt;br&gt;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/VCF&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/VCF&lt;/a&gt;&lt;br&gt;&lt;br&gt;&amp;#160;&lt;br&gt;&lt;br&gt;GRCh38.p7&amp;#58;&lt;br&gt;&lt;br&gt;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/VCF&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b150_GRCh38p7/VCF&lt;/a&gt;&lt;/li&gt;&lt;/ul&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Please email snp-admin@ncbi.nlm.nih.gov for any questions and comments.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Regards,&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;</description>
<pubDate>Thu, 06 Apr 2017 17:00:00 EST</pubDate>
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<item>
<title>dbSNP BUILD 149 Release</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2016q4/000174.html</link>
<description>&lt;div class=&quot;ExternalClassF39BBDC57BED4925BB5C2083DA522653&quot;&gt;&lt;p&gt;​&lt;/p&gt;dbSNP BUILD 149&amp;#58; &amp;#160;===============dbSNP Build 149 data for &amp;#160;human, apple, bony_fish, carrot, collared flycatcher, cotton, eudicots, fruit fly, gray short-tailed opossum, honey bee, platypus, pmajor, quail, rabbit, rat, red_flour_beetle, and turquoise_killifish are available now on the web and FTP .===============organism&amp;#58; &amp;#160; &amp;#160; Homo sapienstax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 9606common_name&amp;#58; &amp;#160;humanassembly&amp;#58; &amp;#160; &amp;#160; GRCh38.p7 (GCF_000001405.33)total_ss_cnt&amp;#58; 557939960total_rs_cnt&amp;#58; 154206854new_ss_cnt&amp;#58; &amp;#160; 12578613new_rs_cnt&amp;#58; &amp;#160; 252892FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9606&amp;#160;------------------------------------------------------------&lt;br&gt;organism&amp;#58; 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&amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid93934&amp;#160;------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Oryctolagus cuniculustax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 9986common_name&amp;#58; &amp;#160;rabbitassembly&amp;#58; &amp;#160; &amp;#160; OryCun2.0 (GCF_000003625.3)total_ss_cnt&amp;#58; 41total_rs_cnt&amp;#58; 38new_ss_cnt&amp;#58; &amp;#160; 17new_rs_cnt&amp;#58; &amp;#160; 14FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/rabbit_9986Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9986&amp;#160;------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Rattus norvegicustax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 10116common_name&amp;#58; &amp;#160;ratassembly&amp;#58; &amp;#160; &amp;#160; Rnor_6.0 (GCF_000001895.5)total_ss_cnt&amp;#58; 6473268total_rs_cnt&amp;#58; 5075461new_ss_cnt&amp;#58; &amp;#160; 5new_rs_cnt&amp;#58; &amp;#160; 1FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/rat_10116Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid10116&amp;#160;------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Tribolium castaneumtax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 7070common_name&amp;#58; &amp;#160;red_flour_beetleassembly&amp;#58; &amp;#160; &amp;#160; Tcas5.2 (GCF_000002335.3)total_ss_cnt&amp;#58; 172total_rs_cnt&amp;#58; 172new_ss_cnt&amp;#58; &amp;#160; 0new_rs_cnt&amp;#58; &amp;#160; 0FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/red_flour_beetle_7070Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid7070&amp;#160;------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Nothobranchius furzeritax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 105023common_name&amp;#58; &amp;#160;turquoise_killifishassembly&amp;#58; &amp;#160; &amp;#160; Nfu_20140520 (GCF_001465895.1)total_ss_cnt&amp;#58; 324total_rs_cnt&amp;#58; 321new_ss_cnt&amp;#58; &amp;#160; 0new_rs_cnt&amp;#58; &amp;#160; 0FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/turquoise_killifish_105023Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid105023&amp;#160;------------------------------------------------------------&amp;#160;&lt;br&gt;NOTES&amp;#58;Complete list of current and previously updated organisms&amp;#160;(http&amp;#58;//www.ncbi.nlm.nih.gov/dbvar/content/org_summary/)KNOWN ISSUE&amp;#58;The sequence viewer on human RefSNP page (https&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=662) is currently missing the ClinVar Short Variation and Cited Variants tracks and will be fixed by early next week.&lt;br&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.dbSNP Production Team&lt;br&gt;</description>
<pubDate>Thu, 08 Dec 2016 22:00:00 EST</pubDate>
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<title>dbSNP BUILD 148: Cat, corn, cow, fruit fly, grape, horse, rice, sorghum, tomato, turkey, and zebra finch</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2016q3/000172.html</link>
<description>&lt;div class=&quot;ExternalClassDE4A097856DC48F9A3E5E9D4F12C738D&quot;&gt;&lt;p&gt;​&lt;/p&gt;dbSNP Build 148 data for cat, corn, cow, fruit fly, grape, horse, rice, sorghum, tomato, turkey, and zebra finch are available now on the web and FTP .------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Felis catustax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 9685common_name&amp;#58; &amp;#160;catassembly&amp;#58; &amp;#160; &amp;#160; Felis_catus_8.0 (GCF_000181335.2)total_ss_cnt&amp;#58; 4527926total_rs_cnt&amp;#58; 3609965new_ss_cnt&amp;#58; &amp;#160; 1new_rs_cnt&amp;#58; &amp;#160; 0FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cat_9685Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9685&amp;#160;------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Zea maystax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 4577common_name&amp;#58; &amp;#160;cornassembly&amp;#58; &amp;#160; &amp;#160; B73_RefGen_v3 (GCF_000005005.1)total_ss_cnt&amp;#58; 72130175total_rs_cnt&amp;#58; 54627567new_ss_cnt&amp;#58; &amp;#160; 720203new_rs_cnt&amp;#58; &amp;#160; 375743FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/corn_4577Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid4577&amp;#160;------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Bos taurustax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 9913common_name&amp;#58; &amp;#160;cowassembly&amp;#58; &amp;#160; &amp;#160; Bos_taurus_UMD_3.1.1 (GCF_000003055.6)total_ss_cnt&amp;#58; 293824745total_rs_cnt&amp;#58; 100170652new_ss_cnt&amp;#58; &amp;#160; 40new_rs_cnt&amp;#58; &amp;#160; 623609FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cow_9913Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9913&amp;#160;------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Drosophila melanogastertax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 7227common_name&amp;#58; &amp;#160;fruit flyassembly&amp;#58; &amp;#160; &amp;#160; Release_6_plus_ISO1_MT (GCF_000001215.4)total_ss_cnt&amp;#58; 5239559total_rs_cnt&amp;#58; 5222783new_ss_cnt&amp;#58; &amp;#160; 0new_rs_cnt&amp;#58; &amp;#160; 0FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/fruitfly_7227Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid7227&amp;#160;------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Vitis viniferatax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 29760common_name&amp;#58; &amp;#160;grapeassembly&amp;#58; &amp;#160; &amp;#160; 12X (GCF_000003745.3)total_ss_cnt&amp;#58; 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&amp;#160; &amp;#160; Oryza sativatax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 4530common_name&amp;#58; &amp;#160;riceassembly&amp;#58; &amp;#160; &amp;#160; IRGSP-1.0 (GCF_001433935.1)&amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160; (GCF_001563185.1)total_ss_cnt&amp;#58; 18745251total_rs_cnt&amp;#58; 13158285new_ss_cnt&amp;#58; &amp;#160; 6174100new_rs_cnt&amp;#58; &amp;#160; 2191501FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/rice_4530Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid4530&amp;#160;------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Sorghum bicolortax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 4558common_name&amp;#58; &amp;#160;sorghumassembly&amp;#58; &amp;#160; &amp;#160; Sorbi1 (GCF_000003195.2)total_ss_cnt&amp;#58; 8425370total_rs_cnt&amp;#58; 7130991new_ss_cnt&amp;#58; 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&amp;#160; &amp;#160; Meleagris gallopavotax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 9103common_name&amp;#58; &amp;#160;turkeyassembly&amp;#58; &amp;#160; &amp;#160; Turkey_5.0 (GCF_000146605.2)total_ss_cnt&amp;#58; 9307total_rs_cnt&amp;#58; 9275new_ss_cnt&amp;#58; &amp;#160; 0new_rs_cnt&amp;#58; &amp;#160; 0FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/turkey_9103Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9103&amp;#160;------------------------------------------------------------organism&amp;#58; &amp;#160; &amp;#160; Taeniopygia guttatatax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 59729common_name&amp;#58; &amp;#160;zebra_finchassembly&amp;#58; &amp;#160; &amp;#160; Taeniopygia_guttata-3.2.4 (GCF_000151805.1)total_ss_cnt&amp;#58; 1751580total_rs_cnt&amp;#58; 1750278new_ss_cnt&amp;#58; &amp;#160; 0new_rs_cnt&amp;#58; &amp;#160; 0FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/zebra_finch_59729Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid59729&amp;#160;------------------------------------------------------------Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.dbSNP Production Team&lt;br&gt;​</description>
<pubDate>Wed, 20 Jul 2016 15:00:00 EST</pubDate>
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<title>dbSNP Build 147 data release for human, chicken, tilapia, mallard, sheep, date palm, and soybean</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2016q2/000170.html</link>
<description>&lt;div class=&quot;ExternalClass19ABC01C9AEA46729DE12BC53291D26A&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;dbSNP BUILD 147&amp;#58; &amp;#160;&lt;/p&gt;&lt;p&gt;===============&lt;/p&gt;&lt;p&gt;dbSNP Build 147 data for &amp;#160;human, chicken, tilapia, mallard, sheep, date palm, and soybean &amp;#160;are available now on the web and FTP .&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Homo sapiens&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9606&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; human&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; GRCh38.p2 (GCF_000001405.28)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 545361347&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 153953962&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 7020227&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 3471231&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9606&lt;/p&gt;&lt;p&gt;&amp;#160;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Gallus gallus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9031&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; chicken&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Gallus_gallus-5.0 (GCF_000002315.4)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 57442612&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 21303759&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 27&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 21899&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/chicken_9031&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9031&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Oreochromis niloticus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 8128&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; Nile tilapia&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Orenil1.1 (GCF_000188235.2)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 342&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 342&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 2&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 2&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/tilapia_8128&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid8128&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Anas platyrhynchos&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 8839&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; mallard&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; BGI_duck_1.0 (GCF_000355885.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 1280888&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 1273318&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 1158475&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 1150905&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/mallard_8839&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid8839&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Ovis aries&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9940&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; sheep&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Oar_v4.0 (GCF_000298735.2)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 100819456&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 54004408&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 260&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/sheep_9940&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9940&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Phoenix dactylifera&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 42345&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; date_palm&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; DPV01 (GCF_000413155.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 3518029&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 3462877&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/date_palm_42345&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid42345&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Glycine max&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 3847&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; soybean&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Glycine_max_v2.0 (GCF_000004515.4)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 36712769&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 16892621&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 4642962&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 300238&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/soybean_3847&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3847&quot;&gt;&lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3847&lt;/span&gt;&lt;/a&gt; (Note&amp;#58; Entrez update for soybean is delayed and will be available after April 25, 2016)&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------ &lt;/p&gt;&lt;p&gt;NOTES&amp;#58;&lt;/p&gt;&lt;p&gt;* Complete list of current and previously updated organisms &lt;/p&gt;&lt;p&gt;(&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/dbvar/content/org_summary/&quot;&gt;&lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/dbvar/content/org_summary/&lt;/span&gt;&lt;/a&gt;)&lt;/p&gt;&lt;p&gt;* Human GRCh38p2 VCF files compatible with GATK are available here.&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/GATK/&quot;&gt;&lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/GATK/&lt;/span&gt;&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;/p&gt;</description>
<pubDate>Thu, 21 Apr 2016 09:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000048</guid>
</item>
<item>
<title>dbSNP BUILD 146: Salmon, Barrel medic, Cottonwood, and Mouse</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2016q1/000169.html</link>
<description>&lt;div class=&quot;ExternalClass08D2335A658A42E0BE2492AC0FF1AFB9&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;dbSNP Build 146 data for salmon, barrel medic, cottonwood, and mouse are available now on the web and FTP .&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Salmo salar&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 8030&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; Atlantic salmon&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ICSASG_v2 (GCF_000233375.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 1351351&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 1038504&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 1342320&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 1029869&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/salmon_8030&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid8030&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Medicago truncatula&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 3880&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; barrel medic&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; MedtrA17_3.5 (GCF_000219495.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 29&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 29&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/barrel_medic_3880&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3880&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3880&lt;/a&gt;&amp;#160; (Available Feb 22, 2016).&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Populus trichocarpa&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 3694&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; cottonwood&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Poptr1_1 (GCF_000002775.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 17902170&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 9505665&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 17902170&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 9505665&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cottonwood_3694&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3694&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Mus musculus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 10090&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; mouse&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; GRCm38.p3 (GCF_000001635.23)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 135736870&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 80443437&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 107682&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 14352&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/mouse_10090&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid10090&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;dbSNP Production Team​&lt;/p&gt;</description>
<pubDate>Tue, 16 Feb 2016 11:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000047</guid>
</item>
<item>
<title>dbSNP BUILD 146: Corn, cow, dog, rat, chickpea, and rapeseed</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q4/000168.html</link>
<description>&lt;div class=&quot;ExternalClassEA038495876141F89CF740F5723B00D2&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;dbSNP Build 146 data for corn, cow, dog, rat, chickpea, and &lt;span style=&quot;color&amp;#58;#000000;font-family&amp;#58;arial, helvetica, clean, sans-serif;line-height&amp;#58;17.9998px;background-color&amp;#58;#ffffff;&quot;&gt;rapeseed&lt;/span&gt;​ are&amp;#160;available now on the web and FTP .&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Bos taurus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9913&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; cow&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Bos_taurus_UMD_3.1.1 (GCF_000003055.6)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 293824705&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 99547043&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 58867483&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 4364991&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cow_9913&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cow_9913&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9913&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9913&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Zea mays&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 4577&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; corn&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; B73_RefGen_v3 (GCF_000005005.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 71409972&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 54251824&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 57625575&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 43725045&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/corn_4577&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/corn_4577&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid4577&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid4577&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Canis familiaris&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9615&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; dog&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; CanFam3.1 (GCF_000002285.3)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 7436723&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 5932939&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 3904945&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 2669816&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/dog_9615&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/dog_9615&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9615&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9615&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Rattus norvegicus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 10116&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; rat&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Rnor_6.0 (GCF_000001895.5)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 6473263&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 5075460&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 3&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 2&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/rat_10116&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/rat_10116&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid10116&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid10116&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Brassica napus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 3708&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; rapeseeds&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Brassica_napus_assembly_v1.0 (GCF_000686985.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 914257&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 901510&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/rapeseeds_3708/&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/rapeseeds_3708/&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term&lt;/a&gt;= txid3708&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Cicer arietinum&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 3827&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; chickpea&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ASM33114v1 (GCF_000331145.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 873342&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 519066&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 0&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/chickpea_3827&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/chickpea_3827&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3827&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3827&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Contact &lt;a href=&quot;mailto&amp;#58;snp-admin@ncbi.nlm.ncbi.nih.gov&quot;&gt;snp-admin@ncbi.nlm.ncbi.nih.gov&lt;/a&gt; if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;dbSNP Production Team​&lt;/p&gt;</description>
<pubDate>Tue, 15 Dec 2015 12:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000046</guid>
</item>
<item>
<title>dbSNP Human Build 146 Release</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q4/000167.html</link>
<description>&lt;div class=&quot;ExternalClass5CCF6019D00848AB85EC0A7060354EB6&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;dbSNP human build 146 for both GRCh38.p2 and GRCh37.p13 assemblies is now available.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Homo sapiens&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9606&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; human&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; GRCh38.p2 (GCF_000001405.28) and GRCh37p13 (GCF_000001405.25)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 538341120&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 150482731&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 32465411&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 747354&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9606&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9606&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Release notes&amp;#58;&lt;/p&gt;&lt;p&gt;============&lt;/p&gt;&lt;p&gt;*&amp;#160; New submissions&amp;#58;&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;http&amp;#58;//1.usa.gov/1PMLG9H&quot;&gt;http&amp;#58;//1.usa.gov/1PMLG9H&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;* New content&amp;#58;&lt;/p&gt;&lt;p&gt;dbSNP RefSNP page now includes allele frequency from 1000 Genomes, ExAC, and GO-ESP along with HapMap and other submitted populations.&lt;/p&gt;&lt;p&gt;Example&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=693#Diversity&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=693#Diversity&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Population descriptions for allele frequency data.&lt;/p&gt;&lt;p&gt;-----------------------------------------------------------------&lt;/p&gt;&lt;p&gt;1000 Genomes Super Population (&lt;a href=&quot;http&amp;#58;//www.1000genomes.org/category/frequently-asked-questions/population&quot;&gt;http&amp;#58;//www.1000genomes.org/category/frequently-asked-questions/population&lt;/a&gt;)&lt;/p&gt;&lt;p&gt;EAS&amp;#58;&amp;#160;&amp;#160; East Asia&amp;#160; &lt;/p&gt;&lt;p&gt;EUR&amp;#58;&amp;#160; Europe&amp;#160;&amp;#160;&amp;#160; &lt;/p&gt;&lt;p&gt;AFR&amp;#58;&amp;#160; Africa&amp;#160;&amp;#160;&amp;#160; &lt;/p&gt;&lt;p&gt;AMR&amp;#58; America population&amp;#160; &lt;/p&gt;&lt;p&gt;SAS&amp;#58;&amp;#160; South Asia&amp;#160; &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;GO-ESP Cohort Populations (&lt;a href=&quot;https&amp;#58;//esp.gs.washington.edu/drupal/&quot;&gt;https&amp;#58;//esp.gs.washington.edu/drupal/&lt;/a&gt;)&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;ExAC Aggregated Populations (&lt;a href=&quot;http&amp;#58;//exac.broadinstitute.org/faq&quot;&gt;http&amp;#58;//exac.broadinstitute.org/faq&lt;/a&gt;)&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;* FTP data by assembly&amp;#58;&lt;/p&gt;&lt;p&gt;1. &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/&lt;/a&gt;&lt;/p&gt;&lt;p&gt;- This directory has the most current build b146 dbSNP rs (mapped to GRCh38) ftp files.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;2. &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b146_GRCh38p2&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b146_GRCh38p2&lt;/a&gt;&lt;/p&gt;&lt;p&gt;- This directory has b146 dbSNP rs (mapped to GRCh38) ftp files.&lt;/p&gt;&lt;p&gt;- This directory has exactly the same set of sub-directories and files as &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/&lt;/a&gt;.&amp;#160; (In Unix speak, &amp;quot;snp/organisms/human_9606&amp;quot; is symlinked to &amp;quot;snp/organisms/human_9606_b146_GRCh38p2&amp;quot;)&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;3. &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b146_GRCh37p13&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b146_GRCh37p13&lt;/a&gt;&lt;/p&gt;&lt;p&gt;- This directory has b146 dbSNP rs (mapped to GRCh37p13) ftp files&lt;/p&gt;&lt;p&gt;- This directory has exactly the same set of sub-directories as human_9606/human_9606_b146_GRCh38p2.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Please email &lt;a href=&quot;mailto&amp;#58;snp-admin@ncbi.nlm.nih.gov&quot;&gt;snp-admin@ncbi.nlm.nih.gov&lt;/a&gt; for any questions and comments.​&lt;/p&gt;</description>
<pubDate>Tue, 24 Nov 2015 18:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000045</guid>
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<item>
<title>dbSNP BUILD 145: Oil palm, apple, bony fish, field mustard, and crab eating macaque</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q3/000166.html</link>
<description>&lt;div class=&quot;ExternalClass05D2923E131D4A89A206691B2F7B2032&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;dbSNP Build 145 data for oil palm, apple, bony fish, field mustard, and crab eating macaque are available now on the web and FTP in addition to pig, chicken, sorghum, and gibbon that were released on August 26 (&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q3/000165.html&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q3/000165.html&lt;/a&gt;).&amp;#160; &amp;#160;The next dbSNP Build 146 will include human and should be available approximately in 4-6 weeks.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Elaeis guineensis&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 51953&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; oil_palm&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; EG5 (GCF_000442705.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 200000&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 112360&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; NULL&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; NULL&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/oil_palm_51953&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid51953&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid51953&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Malus&amp;#160; domestica&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 3750&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; apple&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; MalDomGD1.0 (GCF_000148765.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 22542&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 18883&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 14628&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 10976&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/apple_3750&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3750&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3750&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Astyanax mexicanus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 7994&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; bony_fish&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Astyanax_mexicanus-1.0.2 (GCF_000372685.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 737&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 507&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; NULL&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; NULL&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/bony_fish_7994&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid7994&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid7994&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Brassica rapa&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 3711&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; field_mustard&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Brapa_1.0 (GCF_000309985.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 197&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 167&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 190&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 160&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/field_mustard_3711&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3711&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3711&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Macaca fascicularis&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9541&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; crab_eating_macaque&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Macaca_fascicularis_5.0 (GCF_000364345.1)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 2069039&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 2068991&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 2068886&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 2068839&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/macaque_9541&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9541&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9541&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;dbSNP Production Team​&lt;/p&gt;</description>
<pubDate>Thu, 17 Sep 2015 18:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000044</guid>
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<item>
<title>​dbSNP BUILD 145: Pig, Chicken, Sorghum, and Gibbon</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q3/000165.html</link>
<description>&lt;div class=&quot;ExternalClass9A7CFC3063324B90AC98691389F70403&quot;&gt;&lt;p&gt;&lt;/p&gt;&lt;pre style=&quot;white-space&amp;#58;pre-wrap;color&amp;#58;#000000;&quot;&gt;dbSNP BUILD 145&amp;#58; Pig, Chicken, Sorghum, and Gibbon.&#10;===============&#10;The following organisms are available in dbSNP&#39;s build 145 release&amp;#58;&#10;&#10;organism&amp;#58; Sus scrofa&#10;tax_id&amp;#58; 9823&#10;common_name&amp;#58; pig&#10;Assembly&amp;#58; Sscrofa10.2 (GCF_000003025.5)&#10;total_ss_cnt&amp;#58; 135476983&#10;total_rs_cnt&amp;#58; 60361867&#10;new_ss_cnt&amp;#58; 20646376&#10;new_rs_cnt&amp;#58; 7682594&#10;FTP&amp;#58; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/pig_9823&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/pig_9823&lt;/a&gt;&#10;Entrez&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9823&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9823&lt;/a&gt;&lt;/pre&gt;&lt;pre style=&quot;white-space&amp;#58;pre-wrap;color&amp;#58;#000000;&quot;&gt;​&#10;organism&amp;#58; Gallus gallus&lt;/pre&gt;&lt;pre style=&quot;white-space&amp;#58;pre-wrap;color&amp;#58;#000000;&quot;&gt;tax_id&amp;#58; 9031&#10;common_name&amp;#58; chicken&#10;Assembly&amp;#58; Gallus_gallus-4.0 (GCF_000002315.3)&#10;total_ss_cnt&amp;#58; 57442585&#10;total_rs_cnt&amp;#58; 21281860&#10;new_ss_cnt&amp;#58; 147&#10;new_rs_cnt&amp;#58; 838111&#10;FTP&amp;#58; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/chicken_9031&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/chicken_9031&lt;/a&gt;&#10;Entrez&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9031&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9031&lt;/a&gt;&lt;/pre&gt;&lt;pre style=&quot;white-space&amp;#58;pre-wrap;color&amp;#58;#000000;&quot;&gt;&#10;organism&amp;#58; Sorghum bicolor&#10;tax_id&amp;#58; 4558&#10;common_name&amp;#58; sorghum&#10;Assembly&amp;#58; Sorbi1 (GCF_000003195.2)&#10;total_ss_cnt&amp;#58; 1756675&#10;total_rs_cnt&amp;#58; 1345423&#10;new_ss_cnt&amp;#58; 0&#10;new_rs_cnt&amp;#58; 36586&#10;FTP&amp;#58; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/sorghum_4558&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/sorghum_4558&lt;/a&gt;&#10;Entrez&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid4558&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid4558&lt;/a&gt;&#10;&#10;organism&amp;#58; Nomascus leucogenys&#10;tax_id&amp;#58; 61853&#10;common_name&amp;#58; northern white-cheeked gibbon&#10;Assembly&amp;#58; Nleu_3.0 (GCF_000146795.2)&#10;total_ss_cnt&amp;#58; 1173217&#10;total_rs_cnt&amp;#58; 1173217&#10;new_ss_cnt&amp;#58; 0&#10;new_rs_cnt&amp;#58; 1173217&#10;FTP&amp;#58; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/primates_61853&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/primates_61853&lt;/a&gt;&#10;Entrez&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid61853&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid61853&lt;/a&gt;&#10;&#10;Contact &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce&quot;&gt;snp-admin at ncbi.nlm.ncbi.nih.gov&lt;/a&gt; if you have any questions or concerns.&#10;dbSNP Production Team​&lt;/pre&gt;</description>
<pubDate>Wed, 26 Aug 2015 16:00:00 EST</pubDate>
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<title>Cat dbSNP Build 144 is available</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q2/000164.html</link>
<description>&lt;div class=&quot;ExternalClass027F253E48B243D2B40B6BEABD9DA07C&quot;&gt;&lt;p&gt;​&lt;/p&gt;dbSNP Build 144 Summary for Cat&amp;#58;&lt;br&gt;organism&amp;#58; &amp;#160; &amp;#160; Felis catustax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 9685common_name&amp;#58; &amp;#160;catAssembly&amp;#58; &amp;#160; &amp;#160; Felis_catus_8.0 (GCF_000181335.2)total_ss_cnt&amp;#58; 4527925total_rs_cnt&amp;#58; 3609996new_ss_cnt&amp;#58; &amp;#160; 4200888new_rs_cnt&amp;#58; &amp;#160; 3282959FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cat_9685Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9685&lt;br&gt;------------------------------------------------------Contact snp-admin at ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.&lt;br&gt;dbSNP Production TeamNational Center for Biotechnology Information (NCBI)National Library of MedicineNational Institutes of Health&lt;br&gt;​</description>
<pubDate>Mon, 29 Jun 2015 17:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000042</guid>
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<title>dbSNP Build 144: Human, horse, chicken, and soybean</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q2/000163.html</link>
<description>&lt;div class=&quot;ExternalClass9CAA3F2683054E289D8050F5A5C8DE4F&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;The following organisms are available in dbSNP Build 144.&amp;#160;&amp;#160; &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Homo sapiens&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9606&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; human&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; GRCh38.p2 (GCF_000001405.28)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 505875709&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 149735377&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 140933587&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 36991638&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &amp;#160;&amp;#160;&amp;#160;&amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606&amp;#160; (Additional release notes below)&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9606&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Human FTP release notes&amp;#58;&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Build 144 maps to both GRCh38p2 and GRCh37p13.&amp;#160;&amp;#160; The FTP directory structure for each assembly is available at&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/release-notes/Build144/human_ftp_directory_change.txt&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Remap issues between GRCh37p13 and GRCh38p2 (ftp&amp;#58;//ftp.ncbi.nih.gov/snp/release-notes/Build144/human_9606_b144_release_notes.txt)&lt;/p&gt;&lt;p&gt;------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Gallus gallus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9031&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; chicken&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Gallus_gallus-4.0 (GCF_000002315.3)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 57685403&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 20443749&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 25550019&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 10917681&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/chicken_9031&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9031&lt;/p&gt;&lt;p&gt;------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Glycine max&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 3847&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; soybean&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; V1.1 (GCF_000004515.3)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 32069807&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 16592383&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 10481221&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 3505321&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/soybean_3847&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid3847&lt;/p&gt;&lt;p&gt;------------------------------------------------------&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Equus caballus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9796&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; horse&lt;/p&gt;&lt;p&gt;assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; EquCab2.0 (GCF_000002305.2)&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 5572537&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 5069494&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 119519&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 95440&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/horse_9796&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9796&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;------------------------------------------------------&lt;/p&gt;&lt;p&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;/p&gt;&lt;p&gt;National Center for Biotechnology Information (NCBI)&lt;/p&gt;&lt;p&gt;National Library of Medicine&lt;/p&gt;&lt;p&gt;National Institutes of Health&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;</description>
<pubDate>Mon, 08 Jun 2015 14:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000041</guid>
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<title>dbSNP Build 142 human VCF update</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q2/000159.html</link>
<description>&lt;div class=&quot;ExternalClass5201401D4EDF4F829B73BC59B174D9D9&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;The human VCF files containing dbSNP updates from last week (&lt;a href=&quot;http&amp;#58;//1.usa.gov/1G0xZKH&quot;&gt;http&amp;#58;//1.usa.gov/1G0xZKH&lt;/a&gt;) are now available on the FTP site (&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/&lt;/a&gt;).&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Please contact &lt;a href=&quot;mailto&amp;#58;snp-admin@ncbi.nlm.ncbi.nih.gov&quot;&gt;snp-admin@ncbi.nlm.ncbi.nih.gov&lt;/a&gt; if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;/p&gt;&lt;p&gt;National Center for Biotechnology Information (NCBI)&lt;/p&gt;&lt;p&gt;National Library of Medicine&lt;/p&gt;&lt;p&gt;National Institutes of Health​&lt;/p&gt;</description>
<pubDate>Mon, 20 Apr 2015 12:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000040</guid>
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<title>Human Build 142 (Oct 2014) updates</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q2/000158.html</link>
<description>&lt;div class=&quot;ExternalClass5A6A8FE214B94993AF8A85B1E1537B2C&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;Human Build 142 (Oct 2014) updates&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;This is an update of Human Build 142 (Oct, 2014) to fix the issues listed below.&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; NCBI Variation Reporter (http&amp;#58;//www.ncbi.nlm.nih.gov/variation/tools/reporter) reclassified ~2K rs from &amp;quot;SO&amp;#58;0001588/synonymous_codon&amp;quot; to &amp;quot;SO&amp;#58;0001819/synonymous_variant&amp;quot;.&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Human mitochondria (MT) rs gene annotation was updated with the correct gene ID&amp;#160; assigned.&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Mapping positions for ~3K rs on GRCh38 were recovered. These rs mapped to a contig shared by GRCh37 and GRCh38, but they were only included on GRCh37 in the original build release (Oct. 2014).&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; A small list of 1000 Genomes phase III variants (70Kss) that require updates were submitted after build 142 had started. These variant updates were not included in build 142 as a result of the late submission, so we have posted the list of the variants here&amp;#58; (ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/known_issues/b142/b142_rs_with_two_GRCh37_positions_from_1000GPhase3.txt).&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Entrez SNP search by validation attributes (by_frequency, by_cluster, etc.) were updated.&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Typically, rs flanking sequences are provided by those ss with the longest flanking sequence (ss_exemplar).&amp;#160; 40M rs in build 142 had their ss_exemplar set incorrectly to an ss with a shorter flankingsequence. Each of these rs has now been updated using the correct ss_exemplar with the longest flanking sequence.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Users that want to get these updates now can retrieve the data from either FTP or Entrez. The update to dbSNP&#39;s VCF format will be available next week&amp;#58;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;FTP&amp;#58; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9606&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9606&lt;/a&gt; &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;*VCF&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/ &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;*updates available next week &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;NOTE&amp;#58; Also included with this update are more than 200 Million variants from EVA ( European Variation Archive) as well as other new submissions since dbSNP Build 142.&amp;#160;&amp;#160; These new submissions have Submitted SNPs (ss) assigned to them, but do not have Reference SNP (rs) assigned yet.&amp;#160; These rs numbers will be available from Human Build 144 in 4-6 weeks.&amp;#160;&amp;#160; The new Human Build 144 will include&amp;#58;&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; All the fixes mentioned in this update notice&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; The results of ss mapping and clustering to existing rs and to &amp;gt;30M new rs&lt;/p&gt;&lt;p&gt;-&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Updated annotation on GRCh38.p2.&amp;#160;&amp;#160; &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Please contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;/p&gt;&lt;p&gt;National Center for Biotechnology Information (NCBI)&lt;/p&gt;&lt;p&gt;National Library of Medicine&lt;/p&gt;&lt;p&gt;National Institutes of Health​&lt;/p&gt;</description>
<pubDate>Wed, 15 Apr 2015 16:00:00 EST</pubDate>
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<title>dbSNP BUILD 143 Non-human Organisms Phase II Release &amp; Updates</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2015q1/000156.html</link>
<description>&lt;div class=&quot;ExternalClass3C713DAD8967499FA8B341C6F24984C3&quot;&gt;&lt;p&gt;​&lt;/p&gt;Included in this announcement&amp;#58;1.&lt;span class=&quot;Apple-tab-span&quot; style=&quot;white-space&amp;#58;pre;&quot;&gt;&#9;&lt;/span&gt;dbSNP BUILD 143&amp;#58; &amp;#160;Non-human Organisms Phase II Release2.&lt;span class=&quot;Apple-tab-span&quot; style=&quot;white-space&amp;#58;pre;&quot;&gt;&#9;&lt;/span&gt;dbSNP BUILD 142&amp;#58; Common Marmoset is available3.&lt;span class=&quot;Apple-tab-span&quot; style=&quot;white-space&amp;#58;pre;&quot;&gt;&#9;&lt;/span&gt;Non-human Organisms VCF Updates&lt;br&gt;1)&lt;span class=&quot;Apple-tab-span&quot; style=&quot;white-space&amp;#58;pre;&quot;&gt;&#9;&lt;/span&gt;dbSNP BUILD 143&amp;#58; &amp;#160;Non-human Organisms Phase II Release=============================================The following organisms are available in dbSNP’s build 143 Phase II release&amp;#58;&lt;br&gt;organism&amp;#58; &amp;#160; &amp;#160; Bos taurustax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 9913common_name&amp;#58; &amp;#160;cowAssembly&amp;#58; &amp;#160; &amp;#160; Bos_taurus_UMD_3.1 (GCF_000003055.4)Annotation&amp;#58; &amp;#160; Bos taurus Annotation Release 103 (GCF_000004275.3)total_ss_cnt&amp;#58; 205353356total_rs_cnt&amp;#58; 85027819new_ss_cnt&amp;#58; &amp;#160; 76000887new_rs_cnt&amp;#58; &amp;#160; 11509794FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cow_9913Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9913&lt;br&gt;organism&amp;#58; &amp;#160; &amp;#160; Ciona intestinalistax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 7719common_name&amp;#58; &amp;#160;squirtAssembly&amp;#58; &amp;#160; &amp;#160; KH (GCF_000224145.2)Annotation&amp;#58; &amp;#160; Ciona intestinalis Annotation Release 102 (GCF_000767295.1)total_ss_cnt&amp;#58; 3233523total_rs_cnt&amp;#58; 3190512new_ss_cnt&amp;#58; &amp;#160; 3233523new_rs_cnt&amp;#58; &amp;#160; 3190512FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/squirt_7719Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid7719&lt;br&gt;organism&amp;#58; &amp;#160; &amp;#160; Microtus ochrogastertax_id&amp;#58; &amp;#160; &amp;#160; &amp;#160; 79684common_name&amp;#58; &amp;#160;prairie_voleAssembly&amp;#58; &amp;#160; &amp;#160; MicOch1.0 (GCF_000317375.1)Annotation&amp;#58; &amp;#160; Microtus ochrogaster Annotation Release 100 (GCF_000447265.1)total_ss_cnt&amp;#58; 14699total_rs_cnt&amp;#58; 14545new_ss_cnt&amp;#58; &amp;#160; 14699new_rs_cnt&amp;#58; &amp;#160; 14545FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/prairie_vole_79684Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid79684&lt;br&gt;2) dbSNP BUILD 142&amp;#58; Common Marmoset is available==========================================Due to production issues common marmoset build 142 release was previously delayed. &amp;#160;It is now available for search and download.FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/common_marmoset_9483Entrez&amp;#58; &amp;#160; &amp;#160; &amp;#160; http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9483&lt;br&gt;&lt;br&gt;3)&lt;span class=&quot;Apple-tab-span&quot; style=&quot;white-space&amp;#58;pre;&quot;&gt;&#9;&lt;/span&gt;Non-human Organisms VCF Updates=============================VCF files for the following organisms released on March 5, 2015 were updated to fix the missing header meta data.FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/common_marmoset_9483FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/sheep_9940FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/red_sheep_469796FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/goat_9925FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/wild_goat_9923FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/pig_9823FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/corn_4577FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/prairie_vole_79684FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cow_9913FTP&amp;#58; &amp;#160; &amp;#160; &amp;#160; &amp;#160; &amp;#160;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/squirt_7719&lt;br&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.&lt;br&gt;dbSNP Production TeamNational Center for Biotechnology Information (NCBI)National Library of MedicineNational Institutes of Health&lt;br&gt;​</description>
<pubDate>Thu, 12 Mar 2015 14:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000038</guid>
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<item>
<title>dbSNP BUILD 143 Non-human Organisms Release</title>
<link>https://www.ncbi.nlm.nih.gov/projects/SNP/</link>
<description>&lt;div class=&quot;ExternalClassF03E3757B1FF4565A78864C67D2119C5&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;The following organisms are available in dbSNP&#39;s build 143 release&amp;#58;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Ovis aries&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9940&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; sheep&lt;/p&gt;&lt;p&gt;Assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Oar_v3.1 (GCF_000298735.1)&lt;/p&gt;&lt;p&gt;Annotation&amp;#58;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=9940&quot;&gt;Ovis aries Annotation Release 100&lt;/a&gt;&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 100819196&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 54004457&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 64884419&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 18446381&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/sheep_9940&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/sheep_9940&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9940&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9940&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Ovis orientalis&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 469796&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; red_sheep&lt;/p&gt;&lt;p&gt;Assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Oar_v3.1 (GCF_000298735.1)&lt;/p&gt;&lt;p&gt;Annotation mapped from&amp;#58;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=9940&quot; style=&quot;line-height&amp;#58;20.7999992370605px;&quot;&gt;Ovis aries Annotation Release 100​&lt;/a&gt;&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 29547990&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 29263208&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; NULL&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; NULL&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/red_sheep_469796&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/red_sheep_469796&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid469796&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid469796&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Capra hircus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9925&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; goat&lt;/p&gt;&lt;p&gt;Assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; CHIR_1.0 (GCF_000317765.1)&lt;/p&gt;&lt;p&gt;Annotation&amp;#58;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=9925&quot;&gt;Capra hircus Annotation Release 100&lt;/a&gt;&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 55076618&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 37166653&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 55016517&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 37105560&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/goat_9925&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/goat_9925&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9925&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9925&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Capra aegagrus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9923&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; wild_goat&lt;/p&gt;&lt;p&gt;Assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; CHIR_1.0 (GCF_000317765.1)&lt;/p&gt;&lt;p&gt;Annotation mapped from&amp;#58;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=9925&quot; style=&quot;line-height&amp;#58;20.7999992370605px;&quot;&gt;Capra hircus Annotation Release 100​&lt;/a&gt;​&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 17530711&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 17415157&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; NULL&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; NULL&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/wild_goat_9923&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/wild_goat_9923&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9923&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9923&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Sus scrofa&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9823&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; pig&lt;/p&gt;&lt;p&gt;Assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Sscrofa10.2 (GCF_000003025.5)&lt;/p&gt;&lt;p&gt;Annotation&amp;#58;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=9823&quot;&gt;Sus scrofa Annotation Release 104​&lt;/a&gt;&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 82712833&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 52679275&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 53621946&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 23976447&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/pig_9823&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/pig_9823&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9823&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9823&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Zea mays&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 4577&lt;/p&gt;&lt;p&gt;common_name&amp;#58;&amp;#160; corn&lt;/p&gt;&lt;p&gt;Assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; B73_RefGen_v3 (GCF_000005005.1)&lt;/p&gt;&lt;p&gt;Annotation&amp;#58;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/genome/annotation_euk/Zea_mays/100/&quot;&gt;Zea mays Annotation Release 100&lt;/a&gt;&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 13784397&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 10526779&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 4750376&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 3326502&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/corn_4577&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/corn_4577&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid4577&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid4577&lt;/a&gt;​&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Contact &lt;a href=&quot;mailto&amp;#58;snp-admin@ncbi.nlm.ncbi.nih.gov&quot;&gt;snp-admin@ncbi.nlm.ncbi.nih.gov&lt;/a&gt; if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;</description>
<pubDate>Tue, 03 Mar 2015 13:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000037</guid>
</item>
<item>
<title>dbSNP BUILD 142: Mouse, Cow, and Zebrafish are available</title>
<link>https://www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi</link>
<description>&lt;div class=&quot;ExternalClassE8861458639144C2A9F73060BC91C5C6&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;The following organisms are available in dbSNP&#39;s build 142 release&amp;#58;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Mus musculus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 10090&lt;/p&gt;&lt;p&gt;Assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; GRCm38.p2 (GCF_000001635.22)&lt;/p&gt;&lt;p&gt;Annotation&amp;#58;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/genome/annotation_euk/Mus_musculus/104/&quot;&gt;Mus musculus Annotation Release 104&lt;/a&gt;&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 135629188&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 80429085&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 12905417&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 9323191&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/mouse_10090&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/mouse_10090&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid10090&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid10090&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Bos taurus&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 9913&lt;/p&gt;&lt;p&gt;Assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Bos_taurus_UMD_3.1 (GCF_000003055.4)&lt;/p&gt;&lt;p&gt;Annotation&amp;#58;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/genome/annotation_euk/Bos_taurus/103/&quot;&gt;Bos taurus Annotation Release 103&lt;/a&gt;&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 205353356&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 85027819&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 76000887&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 11509794&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cow_9913&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/cow_9913&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9913&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9913&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;organism&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Danio rerio&lt;/p&gt;&lt;p&gt;tax_id&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 7955&lt;/p&gt;&lt;p&gt;Assembly&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Zv9 (GCF_000002035.4)&lt;/p&gt;&lt;p&gt;Annotation&amp;#58;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=7955&quot;&gt;Danio rerio Annotation Release 103​&lt;/a&gt;&lt;/p&gt;&lt;p&gt;total_ss_cnt&amp;#58; 18618013&lt;/p&gt;&lt;p&gt;total_rs_cnt&amp;#58; 17765748&lt;/p&gt;&lt;p&gt;new_ss_cnt&amp;#58;&amp;#160;&amp;#160; 17101418&lt;/p&gt;&lt;p&gt;new_rs_cnt&amp;#58;&amp;#160;&amp;#160; 16323757&lt;/p&gt;&lt;p&gt;FTP&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/zebrafish_7955&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/zebrafish_7955&lt;/a&gt;&lt;/p&gt;&lt;p&gt;Entrez&amp;#58;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid7955&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid7955&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Contact &lt;a href=&quot;mailto&amp;#58;snp-admin@ncbi.nlm.ncbi.nih.gov&quot;&gt;snp-admin@ncbi.nlm.ncbi.nih.gov&lt;/a&gt; if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;/p&gt;&lt;p&gt;National Center for Biotechnology Information (NCBI)&lt;/p&gt;&lt;p&gt;National Library of Medicine&lt;/p&gt;&lt;p&gt;National Institutes of Health​&lt;/p&gt;</description>
<pubDate>Wed, 11 Feb 2015 17:00:00 EST</pubDate>
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<title>Variation Viewer webinar on YouTube</title>
<link>https://bit.ly/13lomcN</link>
<description>&lt;div class=&quot;ExternalClassD583947707CB4DF587B2A7B0F339973A&quot;&gt;Curious about human genetic variation? Watch the Variation Viewer webinar on YouTube &amp;amp; learn how to use our genomic browser &lt;a href=&quot;http&amp;#58;//bit.ly/13lomcN&quot;&gt;&lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;http&amp;#58;//bit.ly/13lomcN&lt;/span&gt;&lt;/a&gt;</description>
<pubDate>Fri, 19 Dec 2014 14:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000035</guid>
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<title>dbSNP Human BUILD 142 (GRCh38 and GRCh37.p13)</title>
<link>https://www.ncbi.nlm.nih.gov/projects/SNP/</link>
<description>&lt;div class=&quot;ExternalClassF0F5D954CC2744C88B02A07E34F190C7&quot;&gt;&lt;p&gt;&lt;/p&gt;&lt;p&gt;Oct 16, 2014&lt;/p&gt;&lt;p&gt;dbSNP Human BUILD 142 (GRCh38 and GRCh37.p13)&lt;/p&gt;&lt;p&gt;dbSNP has released human Build 142, which is based on the GRCh38 assembly (http&amp;#58;//www.ncbi.nlm.nih.gov/assembly/GCF_000001405.26/), as well as on the GRCh37.p13 assembly.&amp;#160; dbSNP remapped all submissions (including 1000 Genomes Phase III data) submitted on GRCh37 to GRCh38, and provided them in this release (See Notes below). &lt;/p&gt;&lt;p&gt;We are providing build 142 on both assemblies as we did for build 141 in order to support those researchers who are still using GRCh37 as well as those that are ready to migrate to GRCh38.&amp;#160;&amp;#160; &lt;/p&gt;&lt;p&gt;Human build 142 has a total of 112 million refSNPs (RS), which includes 51 million new RS created in build 142 primarily from 1000 Genomes Phase III variants as well as from other large sequencing projects (see Table below).&amp;#160; B142 is composed primarily of SNV refSNPs, but also includes indels, deletions, microsatellites, and short complex substitutions.&lt;/p&gt;&lt;p&gt;Large submissions included in Build 142&amp;#58;&lt;/p&gt;&lt;p&gt;handle&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; ss_cnt&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; rs_cnt&lt;/p&gt;&lt;p&gt;1000Genomes&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 141719341&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 85435166&lt;/p&gt;&lt;p&gt;EVA-GONL&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 20708240&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 20640754&lt;/p&gt;&lt;p&gt;JMKIDD_LAB&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 15880481&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 15601067&lt;/p&gt;&lt;p&gt;==================================================================================&lt;/p&gt;&lt;p&gt;Component Availability Dates&amp;#58;&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Component&lt;/strong&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &amp;#160;&amp;#160;&amp;#160;&lt;strong&gt;Date Available&lt;/strong&gt;&lt;/p&gt;&lt;p&gt;dbSNP web query&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;Oct 16, 2014&lt;/p&gt;&lt;p&gt;FTP data&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &amp;#160;&amp;#160;&amp;#160;&amp;#160;Oct 16, 2014&lt;/p&gt;&lt;p&gt;Entrez Search&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;Oct 16, 2014&amp;#160; &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;BUILD 142 NOTES&amp;#58;&lt;/p&gt;&lt;ul&gt;&lt;li&gt;Build Summary&amp;#58;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi?build_id=142&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi?build_id=142&lt;/a&gt;&lt;/li&gt;&lt;/ul&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;ul&gt;&lt;li&gt;The 1000 Genomes Phase III release in dbSNP build 142 does not include the ChrX, ChrY, and MT.&amp;#160; These chromosomes will be included in a future dbSNP build pending their submission from 1000 Genomes.&lt;br&gt;&lt;br&gt;&amp;#160;&lt;/li&gt;&lt;li&gt;A small list of 1000 Genomes phase III variants (70353 ss) that require updates was submitted after build 142 had started.&amp;#160; These variant updates were not included in build 142 as a result of the late submission, so we have posted the list of the variants on the FTP site in this file&amp;#58; (&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/1kg_70K_phase_update.txt.gz&quot;&gt;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/1kg_70K_phase_update.txt.gz&lt;/a&gt;)&lt;br&gt; &lt;br&gt;&lt;/li&gt;&lt;li&gt;dbSNP remapped all variants that were submitted on GRCh37 to GRCh38.&amp;#160; For your convenience, we have created a list of those RS that failed to map to GRCh38 and have provided their GRCh37 coordinates&amp;#58; &amp;#160;&amp;#160;(&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/known_issues/b142/rs_without_mapping_b142.bcp&quot;&gt;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/known_issues/b142/rs_without_mapping_b142.bcp&lt;/a&gt;)&lt;br&gt;&lt;br&gt;&amp;#160;&lt;/li&gt;&lt;li&gt;dbSNP remapped to GRCh38 a small number of Submitted SNP (ss) from 1000G Phase III that were submitted on GRCh37.&amp;#160; These ss had different positions than those upon which clustering was based, and as a result, we were unable to aggregate the frequency data for 119 rs. Consequently, we will not be reporting the frequency for these 119 rs at the refSNP level. The submission allele frequency for these rs are located in this file&amp;#58; (&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/known_issues/b142/b142_rs_with_two_GRCh37_positions_from_1000GPhase3.txt&quot;&gt;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/known_issues/b142/b142_rs_with_two_GRCh37_positions_from_1000GPhase3.txt&lt;/a&gt;)&lt;br&gt;&lt;br&gt;&amp;#160;&lt;br&gt;&lt;br&gt;&amp;#160;&lt;/li&gt;&lt;li&gt;The computations for the following VCF common variant files do not include the 1000 Genomes Phase III population frequencies.&amp;#160; These files will be updated and available in approximately two weeks&amp;#58;&lt;br&gt;&lt;br&gt;ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/&lt;br&gt;&lt;br&gt;common_all.vcf.gz&lt;br&gt;&lt;br&gt;common_all_papu.vcf.gz&lt;br&gt;&lt;br&gt;common_and_clinical-latest.vcf.gz&lt;br&gt;&lt;br&gt;common_and_clinical-latest_papu.vcf.gz&lt;br&gt;&lt;br&gt;common_no_known_medical_impact-latest.vcf.gz&lt;br&gt;&lt;br&gt;common_no_known_medical_impact-latest_papu.vcf.gz&lt;/li&gt;&lt;/ul&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Because the number of dbSNP index terms has exceeded the Entrez SNP system limit due to dbSNP&#39;s rapid growth, we have temporarily dropped the indexing of Submitted SNPs (ss) numbers as a short term solution to this problem. We are currently working to upgrade our search indexing system to restore full ss searches back to Entrez SNP in a future release. In the meantime, users can directly access the dropped ss numbers by using the dbSNP Batch Query Service at&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/batchquery.html&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/batchquery.html&lt;/a&gt;, or by using this cgi&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_ss.cgi?subsnp_id=ss329&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_ss.cgi?subsnp_id=ss329&lt;/a&gt;&lt;br&gt; &lt;br&gt;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; There are differences in variation mapping location, gene annotation, and functional consequence between GRCh37.p13 and GRCh38. &amp;#160;Reports of these variation mapping and functional consequence differences are available at&amp;#58; ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/known_issues/b142/consequence_change/)&lt;/p&gt;&lt;ul&gt;&lt;li&gt;There is a set of co-located refSNPs in B141 that were merged in B142.&amp;#160; A list of these co-located refSNPs is available at&amp;#58; (ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/known_issues/b142/rs_colocated.bcp)&lt;/li&gt;&lt;/ul&gt;&lt;p&gt;&lt;br&gt;&lt;br&gt;&lt;/p&gt;&lt;ul&gt;&lt;li&gt;There are a number of refSNPs (rs) whose genome orientation flipped (1) between Build 141 and Build 142 on GRCh38 and (2) between GRCh37p13 and GRCh38 in Build 142.&amp;#160; The lists of the affected rs numbers are&amp;#58; &lt;/li&gt;&lt;/ul&gt;&lt;ol&gt;&lt;li&gt;Between Build 141 and Build 142 on GRCh38 (ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/known_issues/b142/rs_with_changed_orientation.bcp) &lt;/li&gt;&lt;li&gt;Between GRCh37p13 and GRCh38 in Build 142&lt;br&gt;&lt;br&gt;(ftp&amp;#58;//ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/known_issues/b142/b142_rs_GRCh37_to_GRCh38_orientation_flip.txt)&lt;/li&gt;&lt;/ol&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;==================================================================================&lt;/p&gt;&lt;p&gt;REPORT, SEARCH AND DOWNLOAD NOTES&amp;#58;&lt;/p&gt;&lt;p&gt;&lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;RefSNP Reports&lt;/span&gt;&lt;/p&gt;&lt;p&gt;The refSNP page will report the positions of variations on both the GRCh38 assembly and the GRCh37.p13 assembly.&lt;/p&gt;&lt;p&gt;&lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;Entrez Search&lt;/span&gt;&lt;/p&gt;&lt;p&gt;Although B142 maps to both GRCh38 and GRCh37p13, Entrez SNP is indexed with GRCh38 positions and annotations only.&lt;/p&gt;&lt;p&gt;&lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;FTP Downloads&lt;/span&gt;&lt;/p&gt;&lt;p&gt;The FTP directory structure for B142 is available at&amp;#58; ftp&amp;#58;//ftp.ncbi.nih.gov/snp/release-notes/Build142/ human_ftp_directory_change.txt&lt;/p&gt;&lt;p&gt;=================================================================================&lt;/p&gt;&lt;p&gt;GENERAL NOTES&amp;#58;&lt;/p&gt;&lt;p&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/p&gt;&lt;ul&gt;&lt;li&gt;The Variation Reporter (http&amp;#58;//www.ncbi.nlm.nih.gov/variation/tools/reporter) now supports both GRCh37 and GRCh38 query locations and will be updated to Build 142 in about a week (est. Oct 23, 2014).&amp;#160; For more information on the Variation Reporter, see&amp;#58; http&amp;#58;//www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/help.&lt;/li&gt;&lt;/ul&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;ul&gt;&lt;li&gt;Variation Viewer 1.2 for human is now available (&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view&lt;/a&gt;) and will be updated to Build 142 in about a week (est. Oct 23, 2014).&amp;#160;&amp;#160; &amp;#160;&lt;br&gt;&lt;br&gt;&amp;#160;&lt;/li&gt;&lt;ul&gt;&lt;li&gt;Please see the Variation Viewer release notes for updates (&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/release-notes/&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/release-notes/&lt;/a&gt;).&amp;#160; You can get started using Variation Viewer by watching the &amp;quot;NCBI Variation Viewer Introduction&amp;quot; video or by visiting the Variation Viewer FAQ or Help pages.&amp;#160; Please contact us at snp-admin@ncbi.nlm.nih.gov if you have questions or would like to provide feedback.&lt;/li&gt;&lt;li&gt;Variation Viewer YouTube Video&amp;#58; &lt;a href=&quot;https&amp;#58;//www.youtube.com/watch?v=rnWZ9MFBwUM&quot;&gt;https&amp;#58;//www.youtube.com/watch?v=rnWZ9MFBwUM&lt;/a&gt;&lt;/li&gt;&lt;li&gt;Variation Viewer Help Page&amp;#58; http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/help/&lt;/li&gt;&lt;li&gt;Variation Viewer FAQ&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/faq/&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/faq/&lt;/a&gt;&lt;br&gt;&lt;br&gt;&amp;#160;&lt;/li&gt;&lt;/ul&gt;&lt;/ul&gt;&lt;ul&gt;&lt;li&gt;The 1000Genomes browser (http&amp;#58;//www.ncbi.nlm.nih.gov/variation/tools/1000genomes) currently displays Phase I data.&amp;#160; Once the 1000Genomes project releases the Phase III data (including calls on sex chromosomes and mitochondria), NCBI will work to update the browser to display Phase III data.&amp;#160; In the meantime, you can download the autosomal phase III data from the NCBI FTP site (ftp&amp;#58;//ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20130502/).&lt;/li&gt;&lt;/ul&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;/p&gt;&lt;p&gt;National Center for Biotechnology Information (NCBI)&lt;/p&gt;&lt;p&gt;National Library of Medicine&lt;/p&gt;&lt;p&gt;National Institutes of Health​&lt;/p&gt;</description>
<pubDate>Thu, 16 Oct 2014 18:00:00 EST</pubDate>
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<title>The NCBI webinar on OSIRIS, our open-source forensic DNA analysis program is only one week away!</title>
<link>https://attendee.gotowebinar.com/register/4738269854077432321</link>
<description>&lt;div class=&quot;ExternalClass2F427379F51B404B80C0DE1F84D4B475&quot;&gt;&lt;p&gt;​​&lt;/p&gt;On September 17th from 1&amp;#58;00 - 2&amp;#58;00 PM EDT, NCBI will host a webinar on OSIRIS, an open-source forensics analysis program.&amp;#160;To sign up for this webinar, go here&amp;#58; &lt;a href=&quot;https&amp;#58;//attendee.gotowebinar.com/register/4738269854077432321&quot;&gt;https&amp;#58;//attendee.gotowebinar.com/register/4738269854077432321&lt;/a&gt;OSIRIS is a mathematically based STR analysis program that minimizes analyst time and increases accuracy by identification of artifacts. NDIS has approved OSIRIS as an Expert System for use on offender samples and known reference samples, and it is used by the Illinois State Police and the U.S. Army Criminal Investigation Laboratory. An additional use of this technology is tissue and cell line identification and validation by medical and biological research laboratories. OSIRIS can be downloaded from http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/osiris/download.html.To see a list of past and upcoming webinars, related materials and videos, please visit the NCBI Webinars page.Links&amp;#58;• Webinar registration&amp;#58; &lt;a href=&quot;https&amp;#58;//attendee.gotowebinar.com/register/4738269854077432321&quot;&gt;https&amp;#58;//attendee.gotowebinar.com/register/4738269854077432321&lt;/a&gt;• About OSIRIS&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/osiris/&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/osiris/&lt;/a&gt;• Download the OSIRIS program&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/osiris/download.html&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/osiris/download.html&lt;/a&gt;• OSIRIS source code on GitHub&amp;#58; &lt;a href=&quot;https&amp;#58;//github.com/ncbi/osiris&quot;&gt;https&amp;#58;//github.com/ncbi/osiris&lt;/a&gt;• NCBI Webinars&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/education/webinars/&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/education/webinars/&lt;/a&gt;• Twitter Announcements&amp;#58; &lt;a href=&quot;https&amp;#58;//twitter.com/search?q=osiris%20ncbi&amp;amp;src=typd%E2%80%8B&quot;&gt;https&amp;#58;//twitter.com/search?q=osiris%20ncbi&amp;amp;src=typd​​&lt;/a&gt;</description>
<pubDate>Wed, 10 Sep 2014 14:00:00 EST</pubDate>
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<title>Register for NCBI Variation Viewer Webinar</title>
<link>https://attendee.gotowebinar.com/register/2762824590748330498</link>
<description>&lt;div class=&quot;ExternalClassCBE1A414081D4B67ADCFE5F236ECC53C&quot;&gt;&#10; &lt;span style=&quot;color&amp;#58;#000000;font-family&amp;#58;arial, freesans, helvetica, sans-serif;font-size&amp;#58;12.727272033691406px;line-height&amp;#58;15.454635620117188px;background-color&amp;#58;#f0f0f0;&quot;&gt;&lt;/span&gt;On August 13th, NCBI will host a webinar entitled “&lt;strong&gt;Using the New NCBI Variation Viewer to Explore Human Genetic Variation&lt;/strong&gt;”. This presentation will show you how to find human sequence variants by chromosome position, gene, disease names and database identifiers (RefSNP, Variant region IDs) using NCBI’s new Variation Viewer (&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view&lt;/a&gt;). &amp;#160;For more details on the scope of this webinar and to register, please go to this link&amp;#58; &#10;&lt;a href=&quot;https&amp;#58;//attendee.gotowebinar.com/register/2762824590748330498&quot;&gt;https&amp;#58;//attendee.got​owebinar.com/register/2762824590748330498​&lt;/a&gt;</description>
<pubDate>Wed, 16 Jul 2014 17:00:00 EST</pubDate>
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<title>dbSNP Build 141: Companion Human VCF Files for Patch, Alternate, PAR, and Unplaced Sequences</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2014q2/000140.html</link>
<description>&lt;div class=&quot;ExternalClassF21A27408F47477083689374A3DB584A&quot;&gt;&lt;p&gt;&lt;/p&gt;Human assemblies, including GRCh38, are composed of assembled chromosomes that represent a non-redundant haploid genome. In addition to the primary assembly unit of assembled chromosomes, the dbSNP annotation of GRCH38 and other Genome Reference Consortium (GRC) assemblies will also contain&amp;#58;​&lt;br&gt;•&lt;span class=&quot;Apple-tab-span&quot; style=&quot;white-space&amp;#58;pre;&quot;&gt;&#9;&lt;/span&gt;&lt;strong&gt;Patch sequences&amp;#58;&lt;/strong&gt;sequences provided as assembly updates outside of the normal release cycle&lt;br&gt;•&lt;span class=&quot;Apple-tab-span&quot; style=&quot;white-space&amp;#58;pre;&quot;&gt;&#9;&lt;/span&gt;&lt;strong&gt;Alternate Loci&amp;#58;&amp;#160;&lt;/strong&gt;sequences that provides an alternate representation of a locus found in a largely haploid assembly&lt;br&gt;•&lt;span class=&quot;Apple-tab-span&quot; style=&quot;white-space&amp;#58;pre;&quot;&gt;&#9;&lt;/span&gt;&lt;strong&gt;PAR sequences&amp;#58;&lt;/strong&gt;pseudo-autosomal region found on the X and Y chromosomes of mammals​&lt;br&gt;•&lt;span class=&quot;Apple-tab-span&quot; style=&quot;white-space&amp;#58;pre;&quot;&gt;&#9;&lt;/span&gt;&lt;strong&gt;Unplaced sequences&amp;#58;&lt;/strong&gt;sequences found in an assembly that are not associated with any chromosome&lt;br&gt;Visit the GRC Assembly Terminology page&amp;#58; http&amp;#58;//www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/info/definitions.shtml for more detailed sequence definitions.&lt;br&gt;Although interesting genetic variations may occur in these sequences, most researchers may never see them since the current VCF specification limits one placement of an RSID per row and typically the preferred placement is a chromosome position.&lt;br&gt;To support reporting on these additional, non-primary chromosome locations, we are now releasing a companion file for clinical data, named with a “papu” (&lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;&lt;strong&gt;p&lt;/strong&gt;&lt;/span&gt;atch, &lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;&lt;strong&gt;a&lt;/strong&gt;&lt;/span&gt;lternate, &lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;&lt;strong&gt;P&lt;/strong&gt;&lt;/span&gt;AR, &lt;span style=&quot;text-decoration&amp;#58;underline;&quot;&gt;&lt;strong&gt;u&lt;/strong&gt;&lt;/span&gt;nplaced) extension.&amp;#160;&lt;br&gt;The files are available on the &amp;#160;dbSNP FTP sites for GRCh38 and GRCh37p13.&lt;br&gt;GRCh38&amp;#58;&lt;blockquote style=&quot;margin&amp;#58;0px 0px 0px 40px;border&amp;#58;none;padding&amp;#58;0px;&quot;&gt;​ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/&amp;#160;&lt;br&gt;Please note that GRCh38 currently does not have &amp;#160;PATCH sequences yet. &amp;#160;VCF files will be updated when PATCH sequences are leased for GRCh38.​&lt;br&gt;&lt;br&gt;&lt;/blockquote&gt;GRCh37p13&amp;#58;&lt;blockquote style=&quot;margin&amp;#58;0px 0px 0px 40px;border&amp;#58;none;padding&amp;#58;0px;&quot;&gt;​​ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606_b141_GRCh37p13/VCF/&lt;/blockquote&gt;&lt;blockquote style=&quot;margin&amp;#58;0px 0px 0px 40px;border&amp;#58;none;padding&amp;#58;0px;&quot;&gt;​&lt;/blockquote&gt;&lt;br&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or comments.&lt;br&gt;dbSNP Production TeamNational Center for Biotechnology Information (NCBI)National Library of MedicineNational Institutes of Health&lt;br&gt;​</description>
<pubDate>Thu, 05 Jun 2014 10:00:00 EST</pubDate>
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<title>dbSNP Human BUILD 141 (GRCh38 and GRCh37p13)</title>
<link>https://www.ncbi.nlm.nih.gov/projects/SNP/</link>
<description>&lt;div class=&quot;ExternalClass2FDF9E5AF0F2454092C02C71CBBC1D6A&quot;&gt;&lt;p&gt;​&lt;/p&gt;&lt;p&gt;May 21, 2014 &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;dbSNP Human BUILD 141 (GRCh38 and GRCh37p13)&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;dbSNP has released human Build 141 based on the GRCh38 assembly&lt;/p&gt;&lt;p&gt;(&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/assembly/GCF_000001405.26/&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/assembly/GCF_000001405.26/&lt;/a&gt;), as well as on the GRCh37.p13 assembly.&lt;/p&gt;&lt;p&gt;We are providing both assemblies to support those researchers who are still using GRCh37 as well as&lt;/p&gt;&lt;p&gt;those that are ready to migrate to GRCh38.&amp;#160; dbSNP will no longer support annotation on the HuRef and&lt;/p&gt;&lt;p&gt;the CRA_TCAGchr7v2 assemblies.&amp;#160;&amp;#160; Instead the addition of mapping to the haploid hydatidiform mole&lt;/p&gt;&lt;p&gt;(CHM1.1) assembly will be included in the next Build 142 release.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;================================================================================== &lt;/p&gt;&lt;p&gt;BUILD 141 NOTES&amp;#58;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160; Build Summary&amp;#58;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi?build_id=141&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi?build_id=141&lt;/a&gt; &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160; Those B138 RS carried into B141 have submitter asserted sequence positions remapped to GRCh37.p13 and&lt;/p&gt;&lt;p&gt;GRCh38, including all variations from clinical LSDB and ClinVar. &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160; Those B138 RS submitted with flanking sequence carried into B141 had their BLAST positions&lt;/p&gt;&lt;p&gt;verified by SNP as unique (weight 1).&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160; Those B138 RS with multiple mapping positions on one or more chromosomes were not included in&lt;/p&gt;&lt;p&gt;B141.&amp;#160; These RS will be analyzed and processed in a subsequent release.&amp;#160;&amp;#160; The list of rs&lt;/p&gt;&lt;p&gt;(rs_without_mapping_b141) is available at&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/misc/known_issues/b141&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/misc/known_issues/b141&lt;/a&gt;.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160; Those SS numbers carried over from B138 to B141 will be processed further by dbSNP, given a&lt;/p&gt;&lt;p&gt;submitter asserted sequence position, and reported in the next human release.&amp;#160; It should be&lt;/p&gt;&lt;p&gt;noted that SS numbers subjected to further processing will include all variations originating&lt;/p&gt;&lt;p&gt;from clinical LSDB and ClinVar.&amp;#160;&amp;#160; The next human release will occur in Fall, 2014.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160; Following B138, dbSNP performed a validation of existing submitted SNPs(ss) and their assignment&lt;/p&gt;&lt;p&gt;into refSNPs(rs).&amp;#160; During this validation effort, dbSNP found some ss that were mistakenly clustered&lt;/p&gt;&lt;p&gt;into rs numbers due to a combination of submission error and mapping ambiguity.&amp;#160; dbSNP de-clustered&lt;/p&gt;&lt;p&gt;these ss from their old rs clusters, and removed the rs number from dbSNP once all of the ss numbers&lt;/p&gt;&lt;p&gt;were removed from the cluster.&amp;#160; A list (rs_declustered.bcp) of de-clustered ss numbers and the&lt;/p&gt;&lt;p&gt;affected rs numbers is available at&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/misc/known_issues/b141/&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/misc/known_issues/b141/&lt;/a&gt;.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160; Due to assembly differences between GRCh37.p13 and GRCh38, there are differences in mapping&lt;/p&gt;&lt;p&gt;locations and functional consequence between these two assemblies. A report of the mapping and&lt;/p&gt;&lt;p&gt;functional consequence differences is available at&amp;#58;&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/multi_assembly_support/consequence_change&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/multi_assembly_support/consequence_change&lt;/a&gt;.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160; There are a set of co-located refSNPs in B141 that will be merged in B142.&amp;#160; A list (rs_colocated.bcp)&lt;/p&gt;&lt;p&gt;of these co-located refSNPs is available at&amp;#58;&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/misc/known_issues/b141/&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/misc/known_issues/b141/&lt;/a&gt;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;•&amp;#160;&amp;#160; There are a number of rs numbers whose genome orientation was flipped between B138 and B141, which&lt;/p&gt;&lt;p&gt;caused some of these rs numbers to have an extra variant allele in HGVS expression reporting.&amp;#160; A&lt;/p&gt;&lt;p&gt;list of the affected rs numbers (rs_with_changed_orientation.bcp) is available at&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/misc/known_issues/b141/&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/human_9606/misc/known_issues/b141/&lt;/a&gt;.&amp;#160; This issue will be&lt;/p&gt;&lt;p&gt;corrected in B142.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;================================================================================== &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;REPORTING, SEARCH, AND DOWNLOADS NOTES&amp;#58; &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Reporting on RefSNP&amp;#58;&amp;#160; &lt;/p&gt;&lt;p&gt;The refSNP page will report the positions of variations on both the GRCh38&lt;/p&gt;&lt;p&gt;assembly and the GRCh37.p13 assembly.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;The Variation Reporter&amp;#160; (&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/tools/reporter&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/tools/reporter&lt;/a&gt; )&amp;#58; &lt;/p&gt;&lt;p&gt;The Variation Reporter does not yet take query locations on GRCh38 but will remain on GRCh37.&amp;#160; Support for&lt;/p&gt;&lt;p&gt;submissions and reporting on both GRCh37 and GRCh38 will be released by the end of May, 2014.&amp;#160; For&lt;/p&gt;&lt;p&gt;more information on the Variation Reporter, see&amp;#58;&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/help&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/help&lt;/a&gt;.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Entrez Search&amp;#58;&amp;#160; &lt;/p&gt;&lt;p&gt;Although B141 maps to both GRCh38 and GRCh37p13, Entrez SNP is indexed with GRCh38&lt;/p&gt;&lt;p&gt;positions and annotations only.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;FTP Downloads&amp;#58; &lt;/p&gt;&lt;p&gt;The FTP directory structure for B141 is available at&amp;#58; &lt;a href=&quot;ftp&amp;#58;//ftp.ncbi.nih.gov/snp&quot;&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp&lt;/a&gt;&lt;/p&gt;&lt;p&gt;/release-notes/Build141/ b141_human_ftp_directory_change.txt&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;================================================================================= &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;GENERAL NOTES&amp;#58; &lt;/p&gt;&lt;p&gt;1) The dbSNP Handbook was updated on April 3, 2014 with new content and important dbSNP policy&lt;/p&gt;&lt;p&gt;revisions&amp;#58;&amp;#160; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/books/NBK174586/&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/books/NBK174586/&lt;/a&gt; &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;2) The dbSNP VCF submission instructions&lt;/p&gt;&lt;p&gt;were updated to add support for reporting allele frequencies and for the submission of asserted&lt;/p&gt;&lt;p&gt;variant locations for organisms without assemblies&amp;#58;&lt;/p&gt;&lt;p&gt;&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/docs/dbSNP_VCF_Submission.pdf&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/docs/dbSNP_VCF_Submission.pdf&lt;/a&gt; &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;3) The Genotype Search is no longer available.&amp;#160; The Genotype Search site&lt;/p&gt;&lt;p&gt;(&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_gf.cgi&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_gf.cgi&lt;/a&gt;), however, has a list of alternative download&lt;/p&gt;&lt;p&gt;services in its place.&amp;#160; Watch the Genotype Search site for announcements about the new Genotype&lt;/p&gt;&lt;p&gt;Service that will be available later this year.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;4) A preview version of the new Variation Viewer for human is available here&lt;/p&gt;&lt;p&gt;(&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view&lt;/a&gt;) .&amp;#160;&amp;#160; Variation Viewer will eventually replace VarVu&lt;/p&gt;&lt;p&gt;(&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/sites/varvu?gene=4023&amp;amp;rs=328&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/sites/varvu?gene=4023&amp;amp;rs=328&lt;/a&gt;) and dbSNP GeneView Page (&lt;a href=&quot;http&amp;#58;//www.ncbi/&quot;&gt;http&amp;#58;//www.ncbi&lt;/a&gt;.&lt;/p&gt;&lt;p&gt;nlm.nih.gov/projects/SNP/snp_ref.cgi?showRare=on&amp;amp;chooseRs=coding&amp;amp;go=Go&amp;amp;locusId=1287) with integrate&lt;/p&gt;&lt;p&gt;contents from dbSNP, dbVar, and clinVar and a more robust search system.&amp;#160; You can get started by&lt;/p&gt;&lt;p&gt;watching the video &amp;quot;NCBI Variation Viewer Introduction&amp;quot; Video or visiting the FAQ or Help page.&lt;/p&gt;&lt;p&gt;Please contact us if you have questions or would like to provide feedback.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; YouTube Video&amp;#58; &lt;a href=&quot;https&amp;#58;//www.youtube.com/watch?v=rnWZ9MFBwUM&quot;&gt;https&amp;#58;//www.youtube.com/watch?v=rnWZ9MFBwUM&lt;/a&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/p&gt;&lt;p&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; Help Page&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/help/&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/help/&lt;/a&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/p&gt;&lt;p&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; FAQ&amp;#58; &lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/faq/&quot;&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/variation/view/faq/&lt;/a&gt; &lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;Contact &lt;a href=&quot;mailto&amp;#58;snp-admin@ncbi.nlm.ncbi.nih.gov&quot;&gt;snp-admin@ncbi.nlm.ncbi.nih.gov&lt;/a&gt; if you have any questions or concerns.&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;dbSNP Production Team&lt;/p&gt;&lt;p&gt;National Center for Biotechnology Information (NCBI) &lt;/p&gt;&lt;p&gt;National Library of Medicine National Institutes of Health​&lt;/p&gt;</description>
<category>dbSNP</category>
<pubDate>Wed, 21 May 2014 17:00:00 EST</pubDate>
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<title>RELEASE: dbSNP BUILD 140</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2014q2/000138.html</link>
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&lt;/span&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/bee_7460&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;Entrez&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid7460&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;&lt;/font&gt;&lt;/font&gt;&amp;#160;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;organism&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;Bos taurus&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;tax_id&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 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&lt;/span&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/chicken_9031&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;Entrez&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9031&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;&lt;/font&gt;&lt;/font&gt;&amp;#160;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot; face=&quot;Calibri&quot;&gt;&lt;/font&gt;&amp;#160;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;organism&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;Glycine max&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;tax_id&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;3847&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;Assembly&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;V1.1 (GCF_000004515.3)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;Annotation&amp;#58;&lt;span&gt;&amp;#160;&amp;#160; &lt;/span&gt;&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=3487&quot;&gt;Glycine max Annotation Release 101&lt;/a&gt;&amp;#160;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; 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&lt;/span&gt;&lt;span&gt;&amp;#160;&amp;#160;&lt;/span&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/tilapia_8128&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;Entrez&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid8128&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;&lt;/font&gt;&lt;/font&gt;&amp;#160;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot; face=&quot;Calibri&quot;&gt;&lt;/font&gt;&amp;#160;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;organism&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160; 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&lt;/span&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/sheep_9940&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;Entrez&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9940&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;&lt;/font&gt;&lt;/font&gt;&amp;#160;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot; face=&quot;Calibri&quot;&gt;&lt;/font&gt;&amp;#160;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;organism&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;Sus scrofa&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;tax_id&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;9823&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;Assembly&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;Sscrofa10.2 (GCF_000003025.5)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;Annotation&amp;#58;&lt;span&gt;&amp;#160;&amp;#160; &lt;/span&gt;&lt;a href=&quot;http&amp;#58;//www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=9823&quot;&gt;Sus scrofa Annotation Release 104​&lt;/a&gt;&amp;#160;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;total_ss_cnt&amp;#58; 29090887&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;total_rs_cnt&amp;#58; 28702828&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;new_ss_cnt&amp;#58;&lt;span&gt;&amp;#160;&amp;#160; &lt;/span&gt;383&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;new_rs_cnt&amp;#58;&lt;span&gt;&amp;#160;&amp;#160; &lt;/span&gt;95&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;FTP&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;ftp&amp;#58;//ftp.ncbi.nih.gov/snp/organisms/pig_9823&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;Entrez&amp;#58;&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;http&amp;#58;//www.ncbi.nlm.nih.gov/snp/?term=txid9823&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;&lt;/font&gt;&lt;/font&gt;&amp;#160;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;UPDATES AND NOTICES&amp;#58;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;1.&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;Human build 141 based on GRCh38 will be available in about 2 weeks (April 28, 2014).&lt;span&gt;&amp;#160;&amp;#160; &lt;/span&gt;dbSNP will simultaneously update human to both GRCh37.p13 annotation set 105 and GRCh38 annotation set 106.&lt;span&gt;&amp;#160;&amp;#160; &lt;/span&gt;We are providing these assemblies to support people still using GRCh37 as well as those ready to migrate to GRCh38.&lt;span&gt;&amp;#160;&amp;#160; &lt;/span&gt;dbSNP will no longer support annotation on the HuRef and CRA_TCAGchr7v2 assemblies.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;2.&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;Reminder&amp;#58; the genotype search is no longer available.&lt;span&gt;&amp;#160; &lt;/span&gt;However, if you visit the Genotype Search site (http&amp;#58;//www.ncbi.nlm.nih.gov/projects/SNP/snp_gf.cgi), you will find a list of alternative download services in its place.&lt;span&gt;&amp;#160; &lt;/span&gt;Watch here for announcements about the new Genotype Service that will be available later this year. &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;3.&lt;span&gt;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160;&amp;#160; &lt;/span&gt;Large structural variations for many organisms are available at NCBI dbVar (http&amp;#58;//www.ncbi.nlm.nih.gov/dbvar).&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot; face=&quot;Calibri&quot;&gt;&lt;/font&gt;&amp;#160;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot; face=&quot;Calibri&quot;&gt;&lt;/font&gt;&amp;#160;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;dbSNP Production Team&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;National Center for Biotechnology Information (NCBI)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot;&gt;&lt;font face=&quot;Calibri&quot;&gt;National Library of Medicine&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#10;&lt;p class=&quot;MsoNormal&quot; style=&quot;margin&amp;#58;0in 0in 0pt;&quot;&gt;&lt;font size=&quot;3&quot; face=&quot;Calibri&quot;&gt;National Institutes of Health&lt;/font&gt;&lt;/p&gt;</description>
<pubDate>Wed, 09 Apr 2014 09:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000029</guid>
</item>
<item>
<title>dbSNP Build 139 Release</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2013q4/000137.html</link>
<description>dbSNP BUILD 139&lt;br&gt;===============&lt;br&gt;The following organisms are available in dbSNP&#39;s build 139 release.&lt;br&gt;&lt;br&gt;organism:     Aspergillus fumigatus&lt;br&gt;tax_id:       746128&lt;br&gt;Assembly:     ASM265v1 (GCF_000002655.1)&lt;br&gt;Annotation:   Aspergillus fumigatus Annotation Release 100 (GCF_000256155.1)&lt;br&gt;total_ss_cnt: 876398&lt;br&gt;total_rs_cnt: 114955&lt;br&gt;new_ss_cnt:   0&lt;br&gt;new_rs_cnt:   0&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/ascomycetes_746128&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/ascomycetes_746128&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid746128&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid746128&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Canis familiaris&lt;br&gt;tax_id:       9615&lt;br&gt;Assembly:     CanFam3.1 (GCF_000002285.3)&lt;br&gt;Annotation:   Canis lupus familiaris Annotation Release 102 (GCF_000235965.1)&lt;br&gt;total_ss_cnt: 3531778&lt;br&gt;total_rs_cnt: 3263123&lt;br&gt;new_ss_cnt:   106&lt;br&gt;new_rs_cnt:   4239&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/dog_9615&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/dog_9615&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid9615&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid9615&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Equus caballus&lt;br&gt;tax_id:       9796&lt;br&gt;Assembly:     EquCab2.0 (GCF_000002305.2)&lt;br&gt;Annotation:   Equus caballus Annotation Release 100 (GCF_000218255.1)&lt;br&gt;total_ss_cnt: 5453018&lt;br&gt;total_rs_cnt: 4974054&lt;br&gt;new_ss_cnt:   4289273&lt;br&gt;new_rs_cnt:   3810474&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/horse_9796&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/horse_9796&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid9796&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid9796&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Glycine max&lt;br&gt;tax_id:       3847&lt;br&gt;Assembly:     V1.0 (GCF_000004515.1)&lt;br&gt;Annotation:   Glycine max Annotation Release 100 (GCF_000231295.1)&lt;br&gt;total_ss_cnt: 21588586&lt;br&gt;total_rs_cnt: 12105367&lt;br&gt;new_ss_cnt:   15210236&lt;br&gt;new_rs_cnt:   5753333&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/soybean_3847&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/soybean_3847&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid3847&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid3847&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Gorilla gorilla&lt;br&gt;tax_id:       9593&lt;br&gt;Assembly:     gorGor3.1 (GCF_000151905.1)&lt;br&gt;Annotation:   Gorilla gorilla Annotation Release 100 (GCF_000313295.1)&lt;br&gt;total_ss_cnt: 5&lt;br&gt;total_rs_cnt: 5&lt;br&gt;new_ss_cnt:   0&lt;br&gt;new_rs_cnt:   0&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/gorilla_9593&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/gorilla_9593&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid9593&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid9593&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Meleagris gallopavo&lt;br&gt;tax_id:       9103&lt;br&gt;Assembly:     Turkey_2.01 (GCF_000146605.1)&lt;br&gt;Annotation:   Meleagris gallopavo Annotation Release 100 (GCF_000191995.1)&lt;br&gt;total_ss_cnt: 9307&lt;br&gt;total_rs_cnt: 9275&lt;br&gt;new_ss_cnt:   22&lt;br&gt;new_rs_cnt:   0&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/turkey_9103&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/turkey_9103&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid9103&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid9103&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Monodelphis domestica&lt;br&gt;tax_id:       13616&lt;br&gt;Assembly:     MonDom5 (GCF_000002295.2)&lt;br&gt;Annotation:   Monodelphis domestica Annotation Release 101 (GCF_000184275.1)&lt;br&gt;total_ss_cnt: 1196103&lt;br&gt;total_rs_cnt: 1194131&lt;br&gt;new_ss_cnt:   0&lt;br&gt;new_rs_cnt:   0&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/opossum_13616&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/opossum_13616&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid13616&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid13616&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Ornithorhynchus anatinus&lt;br&gt;tax_id:       9258&lt;br&gt;Assembly:     Ornithorhynchus_anatinus_5.0.1 (GCF_000002275.2)&lt;br&gt;Annotation:   Ornithorhynchus anatinus Annotation Release 101 (GCF_000184255.1)&lt;br&gt;total_ss_cnt: 1883034&lt;br&gt;total_rs_cnt: 1319269&lt;br&gt;new_ss_cnt:   0&lt;br&gt;new_rs_cnt:   0&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/platypus_9258&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/platypus_9258&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid9258&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid9258&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Ovis aries&lt;br&gt;tax_id:       9940&lt;br&gt;Assembly:     Oar_v3.1 (GCF_000298735.1)&lt;br&gt;Annotation:   Ovis aries Annotation Release 100 (GCF_000313975.1)&lt;br&gt;total_ss_cnt: 2915034&lt;br&gt;total_rs_cnt: 2839270&lt;br&gt;new_ss_cnt:   196&lt;br&gt;new_rs_cnt:   0&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/sheep_9940&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/sheep_9940&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid9940&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid9940&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Solanum lycopersicum&lt;br&gt;tax_id:       4081&lt;br&gt;Assembly:     SL2.40 (GCF_000188115.1)&lt;br&gt;Annotation:   Solanum lycopersicum Annotation Release 100 (GCF_000344675.1)&lt;br&gt;total_ss_cnt: 433&lt;br&gt;total_rs_cnt: 289&lt;br&gt;new_ss_cnt:   0&lt;br&gt;new_rs_cnt:   0&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/tomato_4081&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/tomato_4081&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid4081&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid4081&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Taeniopygia guttata&lt;br&gt;tax_id:       59729&lt;br&gt;Assembly:     Taeniopygia_guttata0.2.4 (GCF_000151805.1)&lt;br&gt;Annotation:   Taeniopygia guttata Annotation Release 101 (GCF_000332575.1)&lt;br&gt;total_ss_cnt: 1751580&lt;br&gt;total_rs_cnt: 1750278&lt;br&gt;new_ss_cnt:   0&lt;br&gt;new_rs_cnt:   1750278&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/zebra_finch_59729&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/zebra_finch_59729&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid59729&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid59729&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Vitis vinifera&lt;br&gt;tax_id:       29760&lt;br&gt;Assembly:     12X (GCF_000003745.2)&lt;br&gt;Annotation:   Vitis vinifera Annotation Release 100 (GCF_000236055.1)&lt;br&gt;total_ss_cnt: 470878&lt;br&gt;total_rs_cnt: 470645&lt;br&gt;new_ss_cnt:   40&lt;br&gt;new_rs_cnt:   0&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/grape_29760&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/grape_29760&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid29760&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid29760&lt;/a&gt;&lt;br&gt;&lt;br&gt;organism:     Oryctolagus cuniculus&lt;br&gt;tax_id:       9986&lt;br&gt;Assembly:     OryCun2.0 (GCF_000003625.2)&lt;br&gt;Annotation:   Oryctolagus cuniculus Annotation Release 100 (GCF_000004725.1)&lt;br&gt;total_ss_cnt: 24&lt;br&gt;total_rs_cnt: 24&lt;br&gt;new_ss_cnt:   24&lt;br&gt;new_rs_cnt:   24&lt;br&gt;FTP:          &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/rabbit_9986&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/rabbit_9986&lt;/a&gt;&lt;br&gt;Entrez:       &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid9986&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid9986&lt;/a&gt;&lt;br&gt;&lt;br&gt;&lt;br&gt;UPDATES:&lt;br&gt;&lt;br&gt;1.            This is a reminder that the SNV BLAST service is now retired.  Please see our online instructions (&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/projects/SNP/SNPBlast.html&quot;&gt;http://www.ncbi.nlm.nih.gov/projects/SNP/SNPBlast.html&lt;/a&gt;) for an improved alternative BLAST search.&lt;br&gt;&lt;br&gt;2.            The Entrez SNP Summary report (docset) as of 10/31/13 is missing the delimiters between the gene symbol and gene ID and between multiple genes.  This will be fixed in the next Entrez Portal release following QA.   We cannot predict the release date which depends on how quickly QA issues are resolved.  Once the update occur, the gene symbols and gene ID will be reported separately in GENE and GENE_ID fields, respectively.   The GENE_ID field replaced the previous LOCUS_ID field.  The values in each field will be listed in corresponding order and separated by commas for multiple genes.&lt;br&gt;&lt;br&gt;For example, rs1104 mapped to SNX17 (9784) and ZNF513 (130557)&lt;br&gt;(&lt;a href=&quot;http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=snp&amp;amp;id=1104&amp;amp;report=docset&quot;&gt;http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=snp&amp;amp;id=1104&amp;amp;report=docset&lt;/a&gt;)&lt;br&gt;&lt;br&gt;Old format:&lt;br&gt;      GENES=ZNF513130557SNX179784&lt;br&gt;&lt;br&gt;New format:&lt;br&gt;       GENES=SNX17,ZNF513&lt;br&gt;       GENE_ID=9784,130557&lt;br&gt;&lt;br&gt;Contact &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce&quot;&gt;snp-admin at ncbi.nlm.ncbi.nih.gov&lt;/a&gt; if you have any questions or concerns.&lt;br&gt;&lt;br&gt;Oct  31, 2013&lt;br&gt;&lt;br&gt;dbSNP Production Team&lt;br&gt;National Center for Biotechnology Information (NCBI)&lt;br&gt;National Library of Medicine&lt;br&gt;National Institutes of Health&lt;br&gt;</description>
<category>dbSNP Variation</category>
<pubDate>Thu, 31 Oct 2013 15:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000028</guid>
</item>
<item>
<title>dbSNP Build 138 Release Phase III: Mouse, Arabidopsis, Fruitfly, Bee, and Nematode</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2013q3/000135.html</link>
<description>&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Build Summary by Organism&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;---------------------------------------------------------------------------------------------------------------------&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;organism:&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;Mus musculus&lt;span style=&quot;&quot;&gt;                   &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;tax_id:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;10090&lt;span style=&quot;&quot;&gt;                    &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Assembly:&lt;span style=&quot;&quot;&gt;           &lt;/span&gt;GRCm38.p1 (GCF_000001635.21)&lt;span style=&quot;&quot;&gt;                              &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Annotation:&lt;span style=&quot;&quot;&gt;        &lt;/span&gt;Mus musculus Annotation Release 103 (GCF_000296565.1)&lt;span style=&quot;&quot;&gt;                          &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;total_ss_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;122723771&lt;span style=&quot;&quot;&gt;                           &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;total_rs_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;71105894&lt;span style=&quot;&quot;&gt;                             &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;new_ss_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;5240636&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;new_rs_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;1069044&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;FTP:&lt;span style=&quot;&quot;&gt;       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/mouse_10090&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/mouse_10090&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;                      &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Entrez:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid10090&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid10090&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;                      &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;---------------------------------------------------------------------------------------------------------------------&lt;span style=&quot;&quot;&gt;                                             &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;organism:&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;Arabidopsis thaliana&lt;span style=&quot;&quot;&gt;                       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;tax_id:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;3702&lt;span style=&quot;&quot;&gt;                       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Assembly:&lt;span style=&quot;&quot;&gt;           &lt;/span&gt;TAIR10 (GCF_000001735.3)&lt;span style=&quot;&quot;&gt;                          &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Annotation:&lt;span style=&quot;&quot;&gt;        &lt;/span&gt;Arabidopsis thaliana Annotation Release 101 (GCF_000003475.2)&lt;span style=&quot;&quot;&gt;                              &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;total_ss_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;1163172&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;total_rs_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;1069597&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;new_ss_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;1162871&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;new_rs_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;1069296&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;FTP:&lt;span style=&quot;&quot;&gt;       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/arabidopsis_3702&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/arabidopsis_3702&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Entrez:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid3702&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid3702&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;                         &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;---------------------------------------------------------------------------------------------------------------------&lt;span style=&quot;&quot;&gt;                                             &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;organism:&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;Apis mellifera&lt;span style=&quot;&quot;&gt;                    &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;tax_id:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;7460&lt;span style=&quot;&quot;&gt;                       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Assembly:&lt;span style=&quot;&quot;&gt;           &lt;/span&gt;Amel_4.5 (GCF_000002195.4)&lt;span style=&quot;&quot;&gt;                     &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Annotation:&lt;span style=&quot;&quot;&gt;        &lt;/span&gt;Apis mellifera Annotation Release 101 (GCF_000194595.1)&lt;span style=&quot;&quot;&gt;                           &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;total_ss_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;1121589&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;total_rs_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;1119078&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;new_ss_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;1536&lt;span style=&quot;&quot;&gt;                       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;new_rs_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;995&lt;span style=&quot;&quot;&gt;                         &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;FTP:&lt;span style=&quot;&quot;&gt;       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/bee_7460&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/bee_7460&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;                               &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Entrez:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid7460&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid7460&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;                         &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;---------------------------------------------------------------------------------------------------------------------&lt;span style=&quot;&quot;&gt;                                             &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;organism:&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;Caenorhabditis elegans&lt;span style=&quot;&quot;&gt;                 &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;tax_id:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;6239&lt;span style=&quot;&quot;&gt;                       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Assembly:&lt;span style=&quot;&quot;&gt;           &lt;/span&gt;WS195 (GCF_000002985.4)&lt;span style=&quot;&quot;&gt;                          &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Annotation:&lt;span style=&quot;&quot;&gt;        &lt;/span&gt;Caenorhabditis elegans Annotation Release 101 (GCF_000006465.3)&lt;span style=&quot;&quot;&gt;                        &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;total_ss_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;308165&lt;span style=&quot;&quot;&gt;                  &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;total_rs_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;192044&lt;span style=&quot;&quot;&gt;                  &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;new_ss_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;-40272*&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;new_rs_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;-139392*&lt;span style=&quot;&quot;&gt;                              &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;FTP:&lt;span style=&quot;&quot;&gt;       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/nematode_6239&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/nematode_6239&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;                 &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Entrez:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid6239&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid6239&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;                         &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;*Decreased due to submission withdrawn.&lt;span style=&quot;&quot;&gt;                         &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;---------------------------------------------------------------------------------------------------------------------&lt;span style=&quot;&quot;&gt;                             &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;organism:&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;Oryza sativa&lt;span style=&quot;&quot;&gt;                        &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;tax_id:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;4530&lt;span style=&quot;&quot;&gt;                       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Assembly:&lt;span style=&quot;&quot;&gt;           &lt;/span&gt;Build_4.0 (GCF_000005425.2)&lt;span style=&quot;&quot;&gt;                     &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Annotation:&lt;span style=&quot;&quot;&gt;        &lt;/span&gt;Oryza sativa Annotation Release 100 (GCF_000234515.1)&lt;span style=&quot;&quot;&gt;                               &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;total_ss_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;12571151&lt;span style=&quot;&quot;&gt;                             &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;total_rs_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;10966784&lt;span style=&quot;&quot;&gt;                             &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;new_ss_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;6698845&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;new_rs_cnt:&lt;span style=&quot;&quot;&gt;      &lt;/span&gt;5607215&lt;span style=&quot;&quot;&gt;                                &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;FTP:&lt;span style=&quot;&quot;&gt;       &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/rice_4530&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/rice_4530&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;                               &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Entrez:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp/?term=txid4530&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid4530&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;         &lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;---------------------------------------------------------------------------------------------------------------------&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Updates:&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;•&lt;span style=&quot;&quot;&gt;             &lt;/span&gt;Entrez search for Reference SNP (RS) with the ‘rs’ prefix (ie. rs328) has been restored.&lt;span style=&quot;&quot;&gt;   &lt;/span&gt;Searching can also be done without the ‘rs’ prefix (ie. 328).&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;•&lt;span style=&quot;&quot;&gt;             &lt;/span&gt;The human b138_MapLink.bcp.gz file on the FTP site has been updated to fix the strand orientation for 66K&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;rs.&lt;span style=&quot;&quot;&gt;   &lt;/span&gt;The reported NM allele was wrong when rs and mrna are both in reverse orientationto the genome.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_data/b138_MapLink.bcp.gz&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_data/b138_MapLink.bcp.gz&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;span style=&quot;&quot;&gt;&lt;font size=3 face=Calibri&gt;                &lt;/font&gt;&lt;/span&gt;&lt;/p&gt;</description>
<pubDate>Thu, 15 Aug 2013 16:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000027</guid>
</item>
<item>
<title>dbSNP human build 138 VCF update</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2013q3/000134.html</link>
<description>&#13;&#10;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;The human VCF files have been updated with contents from dbSNP build 138 (See previous build announcement &lt;a href=&quot;http://1.usa.gov/137oSDZ&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;http://1.usa.gov/137oSDZ&lt;/font&gt;&lt;/a&gt;).&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;        FTP FILES:  &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;blockquote style=&quot;margin-right:0px&quot; dir=ltr&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/00-All.vcf.gz&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/00-All.vcf.gz&lt;/font&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/00-All.vcf.gz.tbi&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/00-All.vcf.gz.tbi&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/common_all.vcf.gz&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/common_all.vcf.gz&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/common_all.vcf.gz.tbi&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/common_all.vcf.gz.tbi&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&lt;/blockquote&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;        README:  &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/00--README.txt&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/00--README.txt&lt;/font&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;        CONTENT: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/variation/docs/human_variation_vcf/&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;http://www.ncbi.nlm.nih.gov/variation/docs/human_variation_vcf/&lt;/font&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;        DEFINITIONS AND TERMS:  &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/variation/docs/glossary/&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;http://www.ncbi.nlm.nih.gov/variation/docs/glossary/&lt;/font&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;Changes for Build 138:&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;1.      dbSNP variations marked as ‘common’  with minor allele frequency (MAF) of &amp;gt;=0.01 (&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/variation/docs/glossary/#common&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;http://www.ncbi.nlm.nih.gov/variation/docs/glossary/#common&lt;/font&gt;&lt;/a&gt;) is now based on frequency data from 1000 Genomes frequency data and not from the 50 major populations (&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/variation/docs/glossary/#major_population&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;http://www.ncbi.nlm.nih.gov/variation/docs/glossary/#major_population&lt;/font&gt;&lt;/a&gt;).&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;2.      The  common variation (COMMON) flag  and complete allele frequency (CAF) set  are added to the VCF INFO field.&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;Header:&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;##INFO=&amp;lt;ID=COMMON,Number=1,Type=Integer,Description=&amp;quot;RS is a common SNP.  A common SNP is one that has at least one 1000Genomes population with a minor allele of frequency &amp;gt;= 1% and for which 2 or more founders contribute to that minor allele frequency.&amp;quot;&amp;gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;##INFO=&amp;lt;ID=CAF,Number=.,Type=String,Description=&amp;quot;Comma delimited list of alternate allele frequencies based on 1000Genomes.  The first frequency refers to the reference base, and alternate alleles follow in the order as in the ALT column.  Where 1000Genomes alternate allele is not in the dbSNPs alternate lalel set, the allele is added to the ALT column.  The minor allele is the second largest value in the list, and was previuosly reported in VCF as the GMAF.  This is the GMAF reported on the RefSNP and EntrezSNP pages and VariationReporter&amp;quot;&amp;gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;Example: &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;RS=58108140;RSPOS=10583;dbSNPBuildID=129;SSR=0;SAO=0;VP=0x050000020001100016000100;WGT=1;VC=SNV;R5;KGPhase1;KGPROD;OTHERKG;CAF=[0.8558,0.1442];COMMON=1&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;3.      The genotype confict (GCF) flag has been removed from the VCF info field.   &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:15.6pt;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;;color:black;font-size:10pt&quot;&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;Contact &lt;/font&gt;&lt;a href=&quot;mailto:snp-admin@ncbi.nlm.ncbi.nih.gov&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;snp-admin@ncbi.nlm.ncbi.nih.gov&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt; if you have any questions or concerns regarding this update.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;August 7, 2013&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP Production Team&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;National Center for Biotechnology Information (NCBI)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;National Library of Medicine&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;National Institutes of Health&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Bethesda, MD, USA.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;</description>
<pubDate>Tue, 06 Aug 2013 17:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000026</guid>
</item>
<item>
<title>RELEASE: dbSNP Build 138 for Human and Cow</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2013q3/000133.html</link>
<description>&lt;font size=3&gt;&lt;font face=Calibri&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;RELEASE: dbSNP Build 138 for Human and Cow&lt;/span&gt;&lt;/b&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;dbSNP Build 138 for Human (txid 9606)&lt;/span&gt;&lt;/b&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;===================================&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;This dbSNP human build is based on Genome Reference Consortium (GRC) assembly GRCh37.p10 (&lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;background:white;color:black;font-size:10pt&quot;&gt;GCF_000001405.22&lt;span class=apple-converted-space&gt;)&lt;/span&gt;&lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;, which is a patch release of GRCh37 that includes minor &lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;changes described in &lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;the patch release README: &lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Homo_sapiens/GRCh37.p10/&lt;u&gt;&lt;font color=&quot;#0000ff&quot;&gt;&lt;span class=MsoHyperlink&gt;.&lt;/span&gt;&lt;/font&gt;&lt;/u&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;dbSNP build 138 includes new submissions based on the ESP6500 release from &lt;/span&gt;&lt;span class=apple-converted-space&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;background:white;color:black;font-size:10pt&quot;&gt; &lt;/span&gt;&lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;background:white;color:black;font-size:10pt&quot;&gt;NHLBI GO ESP &lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;(dbSNP Handle: NHLBI-ESP): &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;dbSNP Handle&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;ss_cnt&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;rs_cnt&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;-------------------&lt;span style=&quot;&quot;&gt;     &lt;/span&gt;&lt;span style=&quot;&quot;&gt;        &lt;/span&gt;--------&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;--------&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;NHLBI-ESP&lt;span style=&quot;&quot;&gt;           &lt;/span&gt;&lt;span style=&quot;&quot;&gt;    &lt;/span&gt;1380691&lt;span style=&quot;&quot;&gt;          &lt;/span&gt;1380691 &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;Where ss_cnt = submitted SNP count, and rs_cnt = refSNP cluster count&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;Build Summary&lt;/span&gt;&lt;/b&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;-------------------&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&#13;&#10;&lt;table style=&quot;margin:auto auto auto -0.75pt;width:325.25pt;border-collapse:collapse&quot; class=MsoNormalTable border=0 cellspacing=0 cellpadding=0 width=434&gt;&#13;&#10;&lt;tbody&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;organism:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:229.25pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=306 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;Homo sapiens&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;tax_id:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:229.25pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=306 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;9606&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;assembly_name:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:229.25pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=306 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;GRCh37.p10_2012-10-19&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;assembly_number:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:229.25pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=306 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;37.5&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;total_ss_cnt:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:229.25pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=306 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;232,952,851&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;total_rs_cnt:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:229.25pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=306 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;62,676,337&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;new_ss_cnt:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:229.25pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=306 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;40,274,298&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;new_rs_cnt:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:229.25pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=306 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;9,108,447&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;FTP:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:229.25pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=306 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;Entrez:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:229.25pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=306 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid9606&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&lt;/tbody&gt;&lt;/table&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;dbSNP Build 138 for cow (txid 9913)&lt;/span&gt;&lt;/b&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;===================================&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;This dbSNP cow build is based on the UMD_3.1 genome assembly (&lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;background:white;color:black;font-size:10pt&quot;&gt;GCF_000003055.4&lt;/span&gt;)&lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; and Btau_4.61 genome assembly (&lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;background:white;color:black;font-size:10pt&quot;&gt;GCF_000003205.5&lt;/span&gt;)&lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;.&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;Build Summary&lt;/span&gt;&lt;/b&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;-------------------&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&#13;&#10;&lt;table style=&quot;margin:auto auto auto -0.75pt;width:324.2pt;border-collapse:collapse&quot; class=MsoNormalTable border=0 cellspacing=0 cellpadding=0 width=432&gt;&#13;&#10;&lt;tbody&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;organism:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:228.2pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=304 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;Bos taurus&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;tax_id:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:228.2pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=304 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;9913&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;assembly_name:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:228.2pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=304 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;UMD31_Btau461_set&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;assembly_number:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:228.2pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=304 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;6.1&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;total_ss_cnt:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:228.2pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=304 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;71,991,837&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;total_rs_cnt:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:228.2pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=304 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;22,070,865&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;new_ss_cnt:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:228.2pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=304 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;45,443,060&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;new_rs_cnt:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:228.2pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=304 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;8,366,644&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;FTP:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:228.2pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=304 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/cow_9913&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&#13;&#10;&lt;tr style=&quot;height:15pt&quot;&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:96pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=128 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;Entrez:&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&#13;&#10;&lt;td style=&quot;border-bottom:#d4d0c8;border-left:#d4d0c8;padding-bottom:0in;background-color:transparent;padding-left:5.4pt;width:228.2pt;padding-right:5.4pt;height:15pt;border-top:#d4d0c8;border-right:#d4d0c8;padding-top:0in&quot; valign=bottom width=304 nowrap&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;http://www.ncbi.nlm.nih.gov/snp/?term=txid9913&lt;/span&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&lt;/tbody&gt;&lt;/table&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;* All formats and conventions for this build are described in ftp.ncbi.nih.gov/snp/00readme.txt. &lt;span style=&quot;&quot;&gt; &lt;/span&gt;Please note that we update this README document only on a periodic basis.&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;* Complete data for build 138 will be available in multiple formats, and are separated by organism.&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;The data are available at ftp://ftp.ncbi.nih.gov/snp/organisms/&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;line-height:normal;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black&quot;&gt;* The complete build summary for build 138 is available at:www.ncbi.nlm.nih.gov/SNP/snp_summary.cgi&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;Updates and New Features for SNP Build 138&lt;/span&gt;&lt;/b&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.25in&quot; class=MsoListParagraphCxSpFirst&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;text-indent:-0.25in;margin:0in 0in 10pt 0.25in&quot; class=MsoListParagraphCxSpLast&gt;&lt;b style=&quot;&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;&lt;span style=&quot;&quot;&gt;A.&lt;span style=&quot;font:7pt &#39;Times New Roman&#39;&quot;&gt;   &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/b&gt;&lt;b style=&quot;&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;Variation Reporter Perl API Update&lt;/span&gt;&lt;/b&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt 0.25in&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;The &lt;b style=&quot;&quot;&gt;Variation Reporter &lt;/b&gt;&lt;span style=&quot;background:white;color:#494949&quot;&gt;(&lt;/span&gt;&lt;/span&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/help&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;http://www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/help&lt;/font&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;) &lt;b style=&quot;&quot;&gt;&lt;span style=&quot;&quot;&gt; &lt;/span&gt;&lt;/b&gt;Perl module was updated on June 5, 2013.&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;This module allows you to programmatically access the NCBI Variation Reporter service&lt;span style=&quot;background:white;color:#494949&quot;&gt;, and &lt;/span&gt;can be downloaded from NCBI at &lt;/span&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/variation/tools/API/Variation.zip&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;ftp://ftp.ncbi.nih.gov/variation/tools/API/Variation.zip&lt;/font&gt;&lt;/span&gt;&lt;/a&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;.&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;text-indent:0.25in;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;Instructions for using and installing the module are in the README file located in the module download, but you can also find these instructions on the web at &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/api/perl&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;http://www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/api/perl&lt;/font&gt;&lt;/a&gt;.&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;text-indent:0.25in;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;If needed, there are instructions &lt;/span&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/api/webservice&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;http://www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/api/webservice&lt;/font&gt;&lt;/a&gt;&lt;span class=MsoHyperlink&gt;&lt;u&gt;&lt;font color=&quot;#0000ff&quot;&gt; &lt;/font&gt;&lt;/u&gt;&lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;available to help you programmatically access the NCBI Variation Reporter service using other computer languages&lt;/span&gt;&lt;u&gt;&lt;font color=&quot;#0000ff&quot;&gt;&lt;span class=MsoHyperlink&gt;.&lt;/span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;&lt;/span&gt;&lt;/font&gt;&lt;/u&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;text-indent:-0.25in;margin:0in 0in 0pt 0.25in&quot; class=MsoListParagraphCxSpFirst&gt;&lt;b style=&quot;&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;&lt;span style=&quot;&quot;&gt;B.&lt;span style=&quot;font:7pt &#39;Times New Roman&#39;&quot;&gt;   &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/b&gt;&lt;b style=&quot;&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;Retiring dbSNP BLAST page&lt;/span&gt;&lt;/b&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt 0.25in&quot; class=MsoListParagraphCxSpLast&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;dbSNP will retire the Short Nucleotide Variation (SNV) BLAST service (&lt;a href=&quot;http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&amp;amp;BLAST_SPEC=SNP&amp;amp;BLAST_PROGRAMS=megaBlast&amp;amp;PAGE_TYPE=BlastSearch&amp;amp;SHOW_DEFAULTS=on&amp;amp;LINK_LOC=blasthome&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&amp;amp;BLAST_SPEC=SNP&amp;amp;BLAST_PROGRAMS=megaBlast&amp;amp;PAGE_TYPE=BlastSearch&amp;amp;SHOW_DEFAULTS=on&amp;amp;LINK_LOC=blasthome&lt;/font&gt;&lt;/a&gt;) on August 1, 2013 . &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt 0.25in&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;The SNV BLAST service allows users to search against the flanking sequence of existing small variations, but because it is cumbersome, it has very low usage, and we have therefore decided to retire it.&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;As an alternative to SNV BLAST, we are providing instructions (&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/pub/factsheets/HowTo_Finding_SNP_by_BLAST.pdf&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;ftp://ftp.ncbi.nih.gov/pub/factsheets/HowTo_Finding_SNP_by_BLAST.pdf&lt;/font&gt;&lt;/a&gt;&lt;span class=MsoHyperlink&gt;&lt;u&gt;&lt;font color=&quot;#0000ff&quot;&gt;) &lt;/font&gt;&lt;/u&gt;&lt;/span&gt;for an alternative search using the NCBI BLAST service to directly BLAST against genome assemblies to find annotated dbSNP variations. This new search provides genomic context for the variants and is much easier to navigate since the search results will be displayed on the Graphic Sequence Viewer.&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any questions or concerns regarding this change.&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoListParagraphCxSpFirst&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoListParagraphCxSpMiddle&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;July 23, 2013&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoListParagraphCxSpMiddle&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;dbSNP Production Team&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoListParagraphCxSpMiddle&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;National Center for Biotechnology Information (NCBI)&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoListParagraphCxSpMiddle&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;National Library of Medicine&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoListParagraphCxSpMiddle&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;National Institutes of Health&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoListParagraphCxSpLast&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt;Bethesda, MD, USA.&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;</description>
<pubDate>Tue, 23 Jul 2013 09:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000025</guid>
</item>
<item>
<title>RELEASE: NCBI dbSNP Build 138 Phase I</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2013q2/000129.html</link>
<description>&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;The following organisms are available in dbSNP Build 138 Phase I release:   &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;organism:        Danio rerio&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;tax_id:          7955&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;ss_cnt:          1516595&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;rs_cnt:          1441991&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;assembly_name:   Zv9&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;assembly_number: 5.1&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;ftp:             &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/zebrafish_7955&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/zebrafish_7955&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;organism:        Gallus gallus&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;tax_id:          9031&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;ss_cnt:          12259245&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;rs_cnt:          9455444&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;assembly_name:   Gallus_gallus_4.0&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;assembly_number: 3.1&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;ftp:             &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/chicken_9031&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/chicken_9031&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;organism:        Rattus norvegicus&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;tax_id:          10116&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;ss_cnt:          6473260&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;rs_cnt:          5076239&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;assembly_name:   Rnor_5.0_Rn_Celera &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;assembly_number: 5.1&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;ftp:             &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/rat_10116&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/rat_10116&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;organism:        Sus scrofa&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;tax_id:          9823&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;ss_cnt:          29090504&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;rs_cnt:          28702733&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;assembly_name:   Sscrofa10.2&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;assembly_number: 4.1&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;ftp:             &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/pig_9823&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/pig_9823&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;The other 119 organisms included in this release do not have an assembly, but for those users who want to perform their own analysis, the data for these organisms are provided on the FTP site without mapping information or additional annotation.  These organisms are also listed on the Build 138 Summary page without a genome build number: &lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi?view+summary=view+summary&amp;amp;build_id=138&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi?view+summary=view+summary&amp;amp;build_id=138&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;=============================================&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Component Availability Dates:&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Component                                        Date Available&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP Web Query                          April 25, 2013&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;FTP Data                                              April 25, 2013&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Entrez Indexing                                May 2, 2013      &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;=============================================&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;NOTES&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;* Build summary is available here (&lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi?view+summary=view+summary&amp;amp;build_id=138&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/projects/SNP/snp_summary.cgi?view+summary=view+summary&amp;amp;build_id=138&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;* All formats and conventions are described in &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/00readme.txt&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp.ncbi.nih.gov/snp/00readme.txt&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;. Please note that the README document is updated periodically only. &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;* Complete data for build 138 will be available in multiple formats at the ftp site for each organism as shown above.   &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;* NEW: Beginning with this release, dbSNP will provide its data in VCF and BED files for those organisms whose rs clusters are mapped to an assembly.  VCF and BED files for zebrafish (tax_id=7955), chicken (tax_id=9031), rat (tax_id=10116), and pig (tax_id=9823) are now available on the FTP site.  &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;* The following organisms are scheduled for release later this year in the summer and fall:&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;organism             tax_id   assembly_name               assembly_number&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;========             =====    ==============               ================&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Apis mellifera   7460       Amel_4.5             5.1&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Arabidopsis thaliana      3702       gencoll_TAIR10 9.2&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Bos taurus           9913       UMD31_Btau461               6.1&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Caenorhabditis elegans                6239       WS195  9.1&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Homo sapiens   9606       GRCh37.p10        37.5&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Macaca mulatta                9544       Mmul    1.2&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Mus musculus   10090    GRCm38.p1_Celera         38.2&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Oryza sativa       4530       Oryza_sativa_Build_4.0 5.1&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Ovis aries            9940       Oar_v3.1              1.1&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Pan troglodytes                9598       Pan_troglodytes-2.1.4   3.2&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;Please contact &lt;/font&gt;&lt;a href=&quot;mailto:snp-admin@ncbi.nlm.nih.gov&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;snp-admin@ncbi.nlm.nih.gov&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt; to report any problems or if you have any questions.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Regards,&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP Production Team&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;April 25, 2013&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;</description>
<pubDate>Thu, 25 Apr 2013 23:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000024</guid>
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<title>ANNOUNCEMENT: dbSNP Mouse BED (Browser Extensible Data) File Format Update</title>
<link>ftp://ftp.ncbi.nih.gov/snp/organisms/mouse_10090/BED/READ_ME.txt</link>
<description>&lt;font size=3&gt;&lt;font face=Calibri&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;ANNOUNCEMENT:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;dbSNP Mouse BED (Browser Extensible Data) File Format Update&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;The dbSNP BED format for mouse has been updated to comply with current standard BED specifications (https://genome.ucsc.edu/FAQ/FAQformat.html#format1 ); it has been QA tested and is compatible with standard BED tools and genome browser uploads such as the NCBI Remap Service (http://www.ncbi.nlm.nih.gov/genome/tools/remap), the UCSC Genome browser (https://genome.ucsc.edu/cgi-bin/hgGateway) and the EBI Genome Browser (http://www.ensembl.org).&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;The BED format update replaces dbSNP’s 30 field BED format (ftp://ftp.ncbi.nih.gov/snp/specs/BED_rsDocsum_Mapping.README.txt) with a format that contains only three required fields and three optional fields:&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;Required Fields:&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;1.&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;chrom:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;The name of the chromosome (e.g. chr1, chr2, etc.).&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;2.&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;chromStart:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;The Reference SNP (rs) start position on the chromosome.&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;Note: The first base in a chromosome is numbered 0.&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;3.&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;chromEnd:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;The rs end position on the chromosome.&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;Optional Fields:&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;4.&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;name:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;The dbSNP Reference SNP (rs) ID&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;5.&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;score:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;dbSNP does not assign a score value, so this field will always contain a 0 .&lt;span style=&quot;&quot;&gt;    &lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;6.&lt;span style=&quot;&quot;&gt;            &lt;/span&gt;strand:&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;This field defines strand orientation as either “+”or “-“.&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;The dbSNP BED files for mouse are available on the dbSNP FTP site separated by chromosome (ftp://ftp.ncbi.nih.gov/snp/organisms/mouse_10090/).&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;Updated BED files for other organisms will be available in future build releases, but we can also provide test BED files for your organism upon request.&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;Please send corrections and comments to snp-admin@ncbi.nlm.nih.gov.&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;Regards,&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;dbSNP Production Team&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;April 10, 2013&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt; &lt;/p&gt;&lt;/font&gt;&lt;/font&gt;</description>
<pubDate>Wed, 10 Apr 2013 18:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000023</guid>
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<title>dbSNP Human Build 137 FTP Update</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2013q1/000127.html</link>
<description>&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt;dbSNP Human Build 137 FTP Update:&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt; &lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-size:12pt&quot;&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/&quot;&gt;&lt;font color=&quot;#0000ff&quot; face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/&lt;/font&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt; &lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt;Primarily, this update fixes RefSNP (rs) functional class reporting.&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;RS &lt;span style=&quot;&quot;&gt; &lt;/span&gt;positions have not changed; rather the interpretation of some rs functional classes relative to the gene has changed.&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;These rs functional class changes include:&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt; &lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;text-indent:-0.25in;margin:0in 0in 0pt 1in&quot; class=MsoListParagraphCxSpFirst&gt;&lt;span style=&quot;line-height:115%;font-size:12pt&quot;&gt;&lt;span style=&quot;&quot;&gt;&lt;font face=Calibri&gt;a.&lt;/font&gt;&lt;span style=&quot;font:7pt &#39;Times New Roman&#39;&quot;&gt;      &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style=&quot;line-height:115%;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt;The reported functional class “near-gene-5” is now applied to neighboring genes when an rs is in proximity of multiple genes.&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;text-indent:-0.25in;margin:0in 0in 0pt 1in&quot; class=MsoListParagraphCxSpMiddle&gt;&lt;span style=&quot;line-height:115%;font-size:12pt&quot;&gt;&lt;span style=&quot;&quot;&gt;&lt;font face=Calibri&gt;b.&lt;/font&gt;&lt;span style=&quot;font:7pt &#39;Times New Roman&#39;&quot;&gt;      &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style=&quot;line-height:115%;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt;Fixed the incorrect reporting of functional classes “splice-3” and “splice-5”&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;for rs located in genes that are in the reverse orientation with respect to genome.&lt;span style=&quot;&quot;&gt;    &lt;/span&gt;The incorrect reporting was inverted for ‘splice-5’ instead of ‘splice-3’ and vice versa.&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;text-indent:-0.25in;margin:0in 0in 10pt 1in&quot; class=MsoListParagraphCxSpLast&gt;&lt;span style=&quot;line-height:115%;font-size:12pt&quot;&gt;&lt;span style=&quot;&quot;&gt;&lt;font face=Calibri&gt;c.&lt;/font&gt;&lt;span style=&quot;font:7pt &#39;Times New Roman&#39;&quot;&gt;       &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;line-height:115%;font-size:14pt&quot;&gt;T&lt;/span&gt;&lt;span style=&quot;line-height:115%;font-size:12pt&quot;&gt;he incorrect reporting of functional classes “UTR” and “nearGene” as functional class “cds-indel” has been corrected.&lt;/span&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt;Please contact dbSNP at &lt;/font&gt;&lt;a href=&quot;mailto:snp-admin@ncbi.nlm.nih.gov&quot;&gt;&lt;font color=&quot;#0000ff&quot; face=Calibri&gt;snp-admin@ncbi.nlm.nih.gov&lt;/font&gt;&lt;/a&gt;&lt;font face=Calibri&gt; if you have questions or concerns.&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt; &lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt;The dbSNP Production Team &lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-size:12pt&quot;&gt;&lt;font face=Calibri&gt;January 9, 2013&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;</description>
<pubDate>Wed, 09 Jan 2013 16:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000022</guid>
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<item>
<title>dbSNP Build 137 Mouse and Cow Release</title>
<link>https://www.ncbi.nlm.nih.gov/SNP</link>
<description>&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;strong&gt;dbSNP Mouse_10090 and Cow_9913 (Bos taurus) Build 137 data are now available:&lt;/strong&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;strong&gt;Mouse (tax_id 10900)&lt;/strong&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;blockquote style=&quot;margin-right:0px&quot; dir=ltr&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Mapped Assemblies: GRCm38 (GCF_000001635.20) and Mm_Celera (GCF_000002165.2)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;New RS:  54562956&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Total RS:  70036850&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&lt;/blockquote&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;                &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;strong&gt;Cow (tax_id 9913)&lt;/strong&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;blockquote style=&quot;margin-right:0px&quot; dir=ltr&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Mapped Assemblies: Btau_4.6.1 (GCF_000003205.5) and Bos_taurus_UMD_3.1 (GCF_000003055.4)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;New RS: 5522517&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Total RS:  26539698&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&lt;/blockquote&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;strong&gt;Component availability dates:&lt;/strong&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;      Component                                 Date available&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;      dbSNP web query                      September 20, 2012&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;      FTP data                                      September 20, 2012&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;      Entrez indexing                          October 15, 2012&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;        &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;strong&gt;NOTES:&lt;/strong&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;•  All formats and conventions are described in &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/00readme.txt&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp.ncbi.nih.gov/snp/00readme.txt&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;. Please note that the README document is updated periodically only. &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;•  The complete data for mouse and cow build 137 will be available in multiple formats at the following locations:&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;Mouse B137 (based on genomic assemblies GCF_000001635.20 and Mn_Celera GCF_000002165.2):  &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/mouse_10090&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp.ncbi.nih.gov/snp/organisms/mouse_10090&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;Cow B137 (based on Bos Taurus genomic assemblies GCF_000003205.5 and GCF_000003055.4): &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/cow_9913&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp.ncbi.nih.gov/snp/organisms/cow_9913&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;Please contact &lt;/font&gt;&lt;a href=&quot;mailto:snp-admin@ncbi.nlm.nih.gov&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;snp-admin@ncbi.nlm.nih.gov&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt; to report any problems or if you have any questions.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Regards,&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP Production Team&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;September 20, 2012&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;</description>
<pubDate>Thu, 20 Sep 2012 23:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000021</guid>
</item>
<item>
<title>RELEASE: NCBI dbSNP Build 137 for Human</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2012q2/000122.html</link>
<description>&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;RELEASE: NCBI dbSNP&#13;&#10;&#13;&#10;Build 137 for Human&lt;/b&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=GramE&gt;&lt;b style=&quot;&quot;&gt;dbSNP&lt;/b&gt;&lt;/span&gt;&lt;b style=&quot;&quot;&gt; Build 137 for Human (&lt;span class=SpellE&gt;txid&lt;/span&gt;&#13;&#10;&#13;&#10;9606)&lt;/b&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;===================================&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;This dbSNP build is based on Genome Reference Consortium&#13;&#10;&#13;&#10;(GRC) assembly GRCh37.p5, which is a patch release of GRCh37 that includes&#13;&#10;&#13;&#10;minor changes that are described in the README for this patch release:&#13;&#10;&#13;&#10;ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Homo_sapiens/GRCh37.p5/.&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=GramE&gt;dbSNP&lt;/span&gt; build 137 includes new&#13;&#10;&#13;&#10;submissions from the 1000 Genomes Project phase I release (dbSNP Handle:&#13;&#10;&#13;&#10;1000Genomes) and from the &lt;span class=SpellE&gt;ClinSeq&lt;/span&gt; Sequencing Project&#13;&#10;&#13;&#10;(dbSNP handle: CLINSEQ-SNP).&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Listed&#13;&#10;&#13;&#10;below &lt;span class=GramE&gt;are the number&lt;/span&gt; of submitted SNPs (ss) and&#13;&#10;&#13;&#10;assigned Reference SNP (rs) clusters that are in B137 for these two submitters:&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=GramE&gt;dbSNP&lt;/span&gt; Handle&lt;span style=&quot;&quot;&gt; &lt;/span&gt;&lt;span class=SpellE&gt;ss_cnt&lt;/span&gt;&lt;span style=&quot;&quot;&gt; &lt;/span&gt;&lt;span class=SpellE&gt;rs_cnt&lt;/span&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;-------------------&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;--------&lt;span style=&quot;&quot;&gt; &lt;/span&gt;--------&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;1000GENOMES&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;2157571&lt;span style=&quot;&quot;&gt; &lt;/span&gt;2156169&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;CLINSEQ_SNP &lt;span style=&quot;&quot;&gt; &lt;/span&gt;374499&lt;span style=&quot;&quot;&gt; &lt;/span&gt;374497&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;Build Summary&lt;/b&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;-------------------&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=GramE&gt;organism&lt;/span&gt;: Homo sapiens&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=SpellE&gt;tax_id&lt;/span&gt;: 9606&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=SpellE&gt;total_ss&lt;/span&gt;: 187,852,828&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=SpellE&gt;total_rs&lt;/span&gt;: 53,558,214&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=SpellE&gt;new_&lt;span class=GramE&gt;ss&lt;/span&gt;&lt;/span&gt;&lt;span class=GramE&gt;(&lt;/span&gt;since b135 release on Oct 13, 2011): 9,572,078&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=SpellE&gt;new_&lt;span class=GramE&gt;rs&lt;/span&gt;&lt;/span&gt;&lt;span class=GramE&gt;(&lt;/span&gt;since b135 release on Oct 13, 2011): 2,708,655&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;Component&#13;&#10;&#13;&#10;Availability Dates&lt;/b&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;--------------------------------------&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;Component&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;Date Available&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=GramE&gt;dbSNP&lt;/span&gt; web query&lt;span style=&quot;&quot;&gt; &lt;/span&gt;June 26, 2012&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;FTP data&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;June 26, 2012 &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;Entrez Search&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;June 26, 2012 &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span style=&quot;color:red&quot;&gt;**Please note that there is a slight&#13;&#10;&#13;&#10;discrepancy in the GMAF for B137 as well as in the MAF for two populations in&#13;&#10;&#13;&#10;B137 due to the presence of non-founder individuals in the populations used in&#13;&#10;&#13;&#10;the calculations.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;The effect of the&#13;&#10;&#13;&#10;non-founders on the calculations was minimal:&lt;/span&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;Population&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Total&#13;&#10;&#13;&#10;Size&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Extra Samples&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Discrepancy &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;Global&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;1092&lt;span style=&quot;&quot;&gt; &lt;/span&gt;3&lt;span style=&quot;&quot;&gt; &lt;/span&gt;0.27% &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;MXL&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;66&lt;span style=&quot;&quot;&gt; &lt;/span&gt;2&lt;span style=&quot;&quot;&gt; &lt;/span&gt;4.54% &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;LWK&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;97&lt;span style=&quot;&quot;&gt; &lt;/span&gt;1&lt;span style=&quot;&quot;&gt; &lt;/span&gt;1.03%&lt;span style=&quot;&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;In the interest of expediency we released the data since the&#13;&#10;&#13;&#10;discrepancies were small, and will release a corrected version of the data at a&#13;&#10;&#13;&#10;future date.&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;* All formats and conventions for this build are described&#13;&#10;&#13;&#10;in ftp.ncbi.nlm.nih.gov/snp/00readme.txt. &lt;span style=&quot;&quot;&gt; &lt;/span&gt;Please note that we update this README document&#13;&#10;&#13;&#10;only on a periodic basis.&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;* Complete data for build 137 will be available in multiple&#13;&#10;&#13;&#10;formats, and are separated by organism.&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;The data are available at ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;* The complete build summary for build 137 is available&#13;&#10;&#13;&#10;at:www.ncbi.nlm.nih.gov/SNP/snp_summary.cgi&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;Updates and New&#13;&#10;&#13;&#10;Features for SNP Build 137&lt;/b&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;A.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;New BED FTP dump&lt;/b&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=GramE&gt;dbSNP&lt;/span&gt; now provides data in dbSNP&#13;&#10;&#13;&#10;BED files.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;The data in these files are&#13;&#10;&#13;&#10;separated by chromosome and are available at:&#13;&#10;&#13;&#10;ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/BED.&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;To see a general description of the BED file format and how&#13;&#10;&#13;&#10;it is used, see http://users.soe.ucsc.edu/~kent/gbd.html#BED&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;The BED contents were derived from dbSNP RS &lt;span class=SpellE&gt;Docsum&lt;/span&gt; ASN.1 (ftp://ftp.ncbi.nlm.nih.gov/snp/specs/docsum_3.3.xsd).&#13;&#10;&#13;&#10;BED column descriptions and mapping to ASN.1 fields are described at&#13;&#10;&#13;&#10;ftp://ftp.ncbi.nlm.nih.gov/snp/specs/BED_rsDocsum_Mapping.README.txt. &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;B.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;&lt;span class=SpellE&gt;Indel&lt;/span&gt;&#13;&#10;&#13;&#10;Clustering Adjustment&lt;/b&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;During the creation of B137, single base &lt;span class=SpellE&gt;indel&lt;/span&gt;&#13;&#10;&#13;&#10;variations that collocated in a &lt;span class=SpellE&gt;homopolymer&lt;/span&gt; stretch&#13;&#10;&#13;&#10;were merged into a single &lt;span class=SpellE&gt;refSNP&lt;/span&gt; (rs) number.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;The resulting position of each merged &lt;span class=SpellE&gt;indel&lt;/span&gt; &lt;span class=SpellE&gt;refSNP&lt;/span&gt; was adjusted to&#13;&#10;&#13;&#10;start at the first base of the repeating nucleotide nearest the beginning of&#13;&#10;&#13;&#10;the &lt;span class=SpellE&gt;homopolymer&lt;/span&gt; sequence.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;A total of 2,617,241 &lt;span class=SpellE&gt;indel&lt;/span&gt;&#13;&#10;&#13;&#10;&lt;span class=SpellE&gt;refSNPs&lt;/span&gt; were merged, giving a final total of&#13;&#10;&#13;&#10;1,203,487 &lt;span class=SpellE&gt;indel&lt;/span&gt; &lt;span class=SpellE&gt;refSNPs&lt;/span&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;Merge histories for &lt;span class=SpellE&gt;indel&lt;/span&gt; &lt;span class=SpellE&gt;refSNPs&lt;/span&gt; are located at:&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/indel_clustering_fix.README&#13;&#10;&#13;&#10;ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/misc/indel_clustering_fix.txt.gz&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;C.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Variation Reporter Perl API&lt;/b&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;NCBI Variation Group has released a Perl module &lt;span class=SpellE&gt;Variation&lt;span class=GramE&gt;:Reporter&lt;/span&gt;&lt;/span&gt; that will allow&#13;&#10;&#13;&#10;you to programmatically access the NCBI Variation Reporter service&#13;&#10;&#13;&#10;(http://www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/help).&lt;span style=&quot;&quot;&gt; &lt;/span&gt;The module can be downloaded from NCBI at&#13;&#10;&#13;&#10;ftp://ftp.ncbi.nlm.nih.gov/variation/tools/API/&lt;span class=GramE&gt;Variation.zip&#13;&#10;&#13;&#10;.&lt;/span&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;Instructions for using and installing the module are located&#13;&#10;&#13;&#10;in the README that comes in the module download.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;b style=&quot;&quot;&gt;D.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Entrez SNP has a New Look&lt;/b&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;The Entrez SNP web site (http://www.ncbi.nlm.nih.gov/snp) is&#13;&#10;&#13;&#10;now live and has a new look and user interface similar to other NCBI resources&#13;&#10;&#13;&#10;to provide a more consistent user experience.&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;Except for the new look and the removal of some reports (see NOTE below)&#13;&#10;&#13;&#10;which are more appropriate as downloads than web display, the search functions&#13;&#10;&#13;&#10;and reporting will remain the same for now.&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;Gradually over the next year additional changes will be made to improve&#13;&#10;&#13;&#10;search functions and variation reporting.&lt;span style=&quot;&quot;&gt; &#13;&#10;&#13;&#10;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;NOTE:&lt;span style=&quot;&quot;&gt; &lt;/span&gt;The following&#13;&#10;&#13;&#10;infrequently viewed reports have been removed from the Entrez web display:&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span style=&quot;&quot;&gt; &lt;/span&gt;XML&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span style=&quot;&quot;&gt; &lt;/span&gt;ASN.1&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span style=&quot;&quot;&gt; &lt;/span&gt;UID&#13;&#10;&#13;&#10;list (&lt;span class=SpellE&gt;uilist&lt;/span&gt;)&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Submitted&#13;&#10;&#13;&#10;SS exemplar (&lt;span class=SpellE&gt;ssexemplar&lt;/span&gt;)&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Merge&#13;&#10;&#13;&#10;Status (&lt;span class=SpellE&gt;mergestatus&lt;/span&gt;)&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Genotype&#13;&#10;&#13;&#10;xml (&lt;span class=SpellE&gt;genxml&lt;/span&gt;)&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Frequency&#13;&#10;&#13;&#10;xml (&lt;span class=SpellE&gt;freqxml&lt;/span&gt;)&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span style=&quot;&quot;&gt; &lt;/span&gt;&lt;span class=SpellE&gt;RefSNP&lt;/span&gt; Cluster Report (RSR) – Abbreviated version &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;Although the above reports will no longer be available as&#13;&#10;&#13;&#10;selected web display options, you can still access them using any of the&#13;&#10;&#13;&#10;following channels:&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;1.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Entrez&#13;&#10;&#13;&#10;Web Search: Use the download option. See&#13;&#10;&#13;&#10;http://www.ncbi.nlm.nih.gov/books/NBK3837/#EntrezHelp.Displaying_and_Saving_a_Set_o&#13;&#10;&#13;&#10;for instructions on how to use the download option. &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;2.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;Entrez &lt;span class=SpellE&gt;eUtils&lt;/span&gt;: http://dev.ncbi.nlm.nih.gov/books/NBK25501/&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;3.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;&lt;span class=GramE&gt;dbSNP&lt;/span&gt; build FTP dumps:&#13;&#10;&#13;&#10;ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;4.&lt;span style=&quot;&quot;&gt; &lt;/span&gt;&lt;span class=GramE&gt;dbSNP&lt;/span&gt; batch query service:&#13;&#10;&#13;&#10;http://www.ncbi.nlm.nih.gov/projects/SNP/batchquery.html&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;Contact snp-admin@ncbi.nlm.ncbi.nih.gov if you have any&#13;&#10;&#13;&#10;questions or concerns regarding this change.&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=GramE&gt;dbSNP&lt;/span&gt; Production Team&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;June 26, 2012&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;National Center for Biotechnology Information (NCBI)&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt;&lt;span class=GramE&gt;National Library of Medicine, National&#13;&#10;&#13;&#10;Institutes of Health, Bethesda, MD, USA.&lt;/span&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&lt;p class=MsoNormal&gt; &lt;/p&gt;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;&#13;&#10;</description>
<pubDate>Tue, 26 Jun 2012 22:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000020</guid>
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<item>
<title>dbSNP Entrez New Look</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2012q2/000121.html</link>
<description>&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;The Entrez SNP web site (&lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/snp&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;) is now live with a new look and user interface similar to other NCBI resources to provide user a consistent experience.   Except for the new look and the removal of some reports (see NOTE below) which are more appropriate as downloads than web display, the search functions and reporting will remained the same for now.   Then gradually over the next year additional changes will be made to improve search functions and variation reporting.    &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;NOTE:  The following infrequently viewed reports have been removed  from the Entrez web display:&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;XML&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;ASN.1&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;UID list (uilist)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Submitted SS exemplar (ssexemplar)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Merge Status (mergestatus)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Genotype xml (genxml)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Frequency xml (freqxml)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;RefSNP Cluster Report (RSR) – Abbreviated version &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Although the above reports will no longer be available as selected web display options, you can still access them using any of the following channels:&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;text-indent:-0.5in;margin:0in 0in 0pt 1in&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;1.            Entrez Web Search: Use the download option. See &lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/books/NBK3837/#EntrezHelp.Displaying_and_Saving_a_Set_o&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/books/NBK3837/#EntrezHelp.Displaying_and_Saving_a_Set_o&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;  for instructions on how to use the download option. &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;2.            Entrez eUtils: &lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/books/NBK25501/&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/books/NBK25501/&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;3.            dbSNP build FTP dumps: &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt; &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt 0.5in&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;4.            dbSNP batch query service: &lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/projects/SNP/batchquery.html&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/projects/SNP/batchquery.html&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;Contact &lt;/font&gt;&lt;a href=&quot;mailto:snp-admin@ncbi.nlm.ncbi.nih.gov&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;snp-admin@ncbi.nlm.ncbi.nih.gov&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt; if you have any questions or concerns regarding this upcoming change.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Regards,&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP Team&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;&quot;&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/span&gt;&lt;/p&gt;</description>
<pubDate>Mon, 18 Jun 2012 20:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000019</guid>
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<item>
<title>dbSNP BED (Browser Extensible Data) File format</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2012q1/000120.html</link>
<description>&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt;The BED format is now available as output from dbSNP Batch query search (&lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/projects/SNP/batchquery.html&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/projects/SNP/batchquery.html&lt;/font&gt;&lt;/a&gt;&lt;font size=3 face=Calibri&gt;) .&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;The dbSNP BED files were derived from dbSNP RS Docsum ASN.1 (ftp://ftp.ncbi.nih.gov/snp/specs/docsum_3.3.xsd).&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;The dbSNP BED column descriptions and mapping to ASN.1 fields are described here (&lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/specs/BED_rsDocsum_Mapping.README.txt&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/specs/BED_rsDocsum_Mapping.README.txt&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;).&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt;For a general description of the BED file format and how it is used, see: &lt;/font&gt;&lt;a href=&quot;http://users.soe.ucsc.edu/~kent/gbd.html#BED&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://users.soe.ucsc.edu/~kent/gbd.html#BED&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP BED files will also be provided with the data separated by chromosome in upcoming dbSNP FTP dumps and in future build releases.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt;Please send corrections and comments to &lt;/font&gt;&lt;a href=&quot;mailto:snp-admin@ncbi.nlm.nih.gov&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;snp-admin@ncbi.nlm.nih.gov&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Regards,&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP Production Team&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;March 19, 2012&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;</description>
<pubDate>Mon, 19 Mar 2012 16:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000018</guid>
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<item>
<title>Build 136: FTP update for build specific SQL files for non-human organisms</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2012q1/000118.html</link>
<description>&#13;&#10;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;The SQL files below have been updated on dbSNP FTP site for the following organisms.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Arabidopsis (taxid 3702)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Chimpanzee (taxid 9598)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Macaque(taxid 9544)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Nematode (taxid 6239)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Pig (taxid 9823)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Rat (taxid 10116)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Orangutan (taxid 9601)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Zebrafish (taxid 7955)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;The build specific files (b136_*) were missing from the regular build dumps and have been restored for each organism.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;Base FTP URL - &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;./arabidopsis_3702/database/organism_data&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;./arabidopsis_3702/database/organism_data/b136_ContigInfo_101.bcp.gz&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;./arabidopsis_3702/database/organism_data/b136_ContigInfo_101.bcp.gz.md5&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; 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class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;./orangutan_9601/database/organism_data/b136_SNPContigProtein_100.bcp.gz&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;./orangutan_9601/database/organism_data/b136_SNPContigProtein_100.bcp.gz.md5&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;./orangutan_9601/database/organism_data/b136_SNPMapInfo_100.bcp.gz&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;./orangutan_9601/database/organism_data/b136_SNPMapInfo_100.bcp.gz.md5&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;./orangutan_9601/database/organism_data/b136_SNPMapLinkProtein_100.bcp.gz&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;./orangutan_9601/database/organism_data/b136_SNPMapLinkProtein_100.bcp.gz.md5&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;</description>
<pubDate>Thu, 16 Feb 2012 16:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000017</guid>
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<item>
<title>Build 135: Human SNPSubSNPLinkHistory.bcp.gz FTP file update</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2012q1/000117.html</link>
<description>&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;The database file SNPSubSNPLinkHistory.bcp.gz has been updated on the FTP site to record the history of submitted SNP (ss) numbers that were withdrawn by submitter when build 135 was released.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_data/SNPSubSNPLinkHistory.bcp.gz&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_data/SNPSubSNPLinkHistory.bcp.gz&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;Please contact &lt;/font&gt;&lt;a href=&quot;mailto:snp-admin@ncbi.nlm.nih.gov&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;snp-admin@ncbi.nlm.nih.gov&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt; if you have any questions or concerns.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Regards,&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP Production Team&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;February 15, 2012&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;National Center for Biotechnology Information (NCBI)&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;</description>
<pubDate>Wed, 15 Feb 2012 13:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000016</guid>
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<item>
<title>Build 135: Human FTP ASN1_flat Format Update</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2012q1/000115.html</link>
<description>&lt;pre&gt;The following new refSNP (rs) attributes have been added to ASN1_flat files on the FTP site&#13;&#10;(&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/ASN1_flat/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/ASN1_flat/&lt;/a&gt;).&#13;&#10;&#13;&#10;1) Clinical significance&#13;&#10;2) Minor Allele Frequency (MAF)/Global minor allele frequency (GMAF)&#13;&#10;3) Suspect Variations&#13;&#10;4) Allele Origin&#13;&#10;**This update contains only additions of the new attributes and that the rest of the data has not changed from previous Build 135 dumps.&#13;&#10;**RS attribute descriptions are located at: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/projects/SNP/docs/rs_attributes.html&quot;&gt;http://www.ncbi.nlm.nih.gov/projects/SNP/docs/rs_attributes.html&#13;&#10;&lt;/a&gt;&lt;/pre&gt;&lt;pre&gt;Please visit this link for further details (&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2012q1/000115.html&quot;&gt;http://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2012q1/000115.html&lt;/a&gt;)&lt;/pre&gt;</description>
<pubDate>Thu, 26 Jan 2012 20:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000014</guid>
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<item>
<title>RELEASE: NCBI dbSNP Build 136 for arabidopsis, chimpanzee, macaque, nematode, orangutan, pig, rat, and zebrafish</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2012q1/000116.html</link>
<description>                         &lt;br&gt;===================================================&lt;br&gt;dbSNP Build 136 &lt;br&gt;===================================================&#13;&#10;Component availability dates:&#13;&#10;      Component                 Date available&lt;br&gt;      dbSNP web query           Jan 26, 2012&lt;br&gt;      FTP data                  Jan 26, 2012&lt;br&gt;      Entrez indexing           Jan 26, 2012&lt;br&gt;      Blast database  Pending&lt;br&gt;      &lt;br&gt; * The complete build summary for 136 is available&lt;br&gt;at:www.ncbi.nlm.nih.gov/SNP/snp_summary.cgi&#13;&#10;&lt;br&gt;===================================================&lt;br&gt;Build 136 is based on the following NCBI genomes:&lt;br&gt;===================================================&#13;&#10;organism tax_id assembly_name&lt;br&gt;========        ======  =============&lt;br&gt;arabidopsis 3702 TAIR10&lt;br&gt;chimpanzee 9598 Pan_troglodytes-2.1.4&lt;br&gt;macaque         9544 Mmul_051212&lt;br&gt;nematode 6239 WS195&lt;br&gt;orangutan 9601 P_pygmaeus_2.0.2&lt;br&gt;pig         9823 Sscrofa10.2&lt;br&gt;rat         10116 RGSC_v3.4&lt;br&gt;zebrafish 7955 Zv9&#13;&#10;===================================================&lt;br&gt;Entrez Search&lt;br&gt;===================================================&lt;br&gt;arabidopsis: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid3702&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid3702&lt;/a&gt;&lt;br&gt;chimpanzee: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid9598&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid9598&lt;/a&gt;&lt;br&gt;macaque: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid9544&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid9544&lt;/a&gt;&lt;br&gt;nematode: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid6239&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid6239&lt;/a&gt;&lt;br&gt;orangutan: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid9601&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid9601&lt;/a&gt;&lt;br&gt;pig: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid9823&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid9823&lt;/a&gt;&lt;br&gt;rat: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid10116&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid10116&lt;/a&gt;&lt;br&gt;zebrafish: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid7955&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid7955&lt;/a&gt;&#13;&#10;===================================================&lt;br&gt;FTP Downloads&lt;br&gt;===================================================&lt;br&gt;* The complete data for build 136 will be available at&lt;br&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/&quot;&gt;ftp.ncbi.nih.gov/snp/organisms/&lt;/a&gt; in multiple formats.&lt;br&gt;* All formats and conventions are described in&lt;br&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/00readme.txt&quot;&gt;ftp.ncbi.nih.gov/snp/00readme.txt&lt;/a&gt;. Please note that the README document is&lt;br&gt;updated periodically. &#13;&#10;arabidopsis: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/arabidopsis_3702/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/arabidopsis_3702/&lt;/a&gt;&lt;br&gt;chimpanzee: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/chimpanzee_9598/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/chimpanzee_9598/&lt;/a&gt;&lt;br&gt;macaque: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/macaque_9544/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/macaque_9544/&lt;/a&gt;&lt;br&gt;nematode: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/nematode_6239/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/nematode_6239/&lt;/a&gt;&lt;br&gt;orangutan: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/orangutan_9601/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/orangutan_9601/&lt;/a&gt;&lt;br&gt;pig: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/pig_9823/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/pig_9823/&lt;/a&gt;&lt;br&gt;rat: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/rat_10116/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/rat_10116/&lt;/a&gt;&lt;br&gt;zebrafish: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/zebrafish_7955/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/zebrafish_7955/&lt;/a&gt;&#13;&#10;&lt;br&gt;Please contact &lt;a href=&quot;mailto:snp-admin@ncbi.nlm.nih.gov&quot;&gt;snp-admin@ncbi.nlm.nih.gov&lt;/a&gt; if you have any question or to report a problem.&#13;&#10;Regards,&#13;&#10;dbSNP Production Team&lt;br&gt;Jan 26, 2012&lt;br&gt;National Center for Biotechnology Information (NCBI)&lt;br&gt;National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.&#13;&#10;&lt;br&gt; </description>
<pubDate>Thu, 26 Jan 2012 20:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000015</guid>
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<title>New NCBI Variation Reporter Tool</title>
<link>https://www.ncbi.nlm.nih.gov/variation/tools/reporter/</link>
<description>&#13;&#10;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=4 face=Calibri&gt;&lt;strong&gt;NCBI Variation Reporter &lt;/strong&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;The Variation Reporter (&lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/variation/tools/reporter/&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/variation/tools/reporter/&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt; )&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;is designed to expedite access to information which may be available about&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;sequence variation at one or thousands of locations on a genome. In other words,&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;whether you need to interpret variation you have identified in one individual in&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;one gene, or from a large resequencing project, Variation Reporter is the tool&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;for you. Specifically, you provide variant calls made in your research or&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;testing and we will try to match these calls to variants that are in dbSNP or&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbVar. If we can match your submitted variant to a known variant, we will&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;provide you with detailed information concerning known alleles for that&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;location. If we cannot match a submitted variant to a known variant, we will&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;calculate whether that variant has a predicted consequence based on NCBI genome&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;annotation.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;Online Help: &lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/help&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/variation/tools/reporter/docs/help&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;Write to Help Desk: &lt;/font&gt;&lt;a href=&quot;http://1.usa.gov/vyQyJp&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;http://1.usa.gov/vyQyJp&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;</description>
<pubDate>Tue, 22 Nov 2011 13:00:00 EST</pubDate>
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<title>dbSNP Build 135 human VCF and genotype XML FTP files are available</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2011q4/000113.html</link>
<description>&#13;&#10;&lt;p class=ExternalClass8D4291EE5A784A08B0537CD224D05B7F&gt;&lt;strong&gt;Human VCF Files&lt;/strong&gt;&lt;/p&gt;&#13;&#10;&#13;&#10;&lt;ul&gt;&#13;&#10;&lt;li&gt;Data in the VCF (Variant Call Format) for human is available on the dbSNP ftp site:&lt;br&gt; &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF&lt;/a&gt;&lt;/li&gt;&#13;&#10;&lt;li&gt; For more information see:&lt;br&gt; &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/000-README.html&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/000-README.html&lt;/a&gt;&lt;br&gt; and&lt;br&gt; &lt;a href=&quot;http://www.1000genomes.org/node/101&quot;&gt;http://www.1000genomes.org/node/101&lt;/a&gt;&lt;/li&gt;&lt;/ul&gt;&lt;strong&gt;&#13;&#10;&lt;p style=&quot;margin-right:0px&quot; dir=ltr&gt;&lt;strong&gt;Human Genotype XML by Gene &lt;/strong&gt;&lt;/p&gt;&#13;&#10;&lt;ul style=&quot;margin-right:0px&quot; dir=ltr&gt;&#13;&#10;&lt;li dir=ltr&gt;&#13;&#10;&lt;div style=&quot;margin-right:0px&quot;&gt;&lt;/strong&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/genotype_by_gene/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/genotype_by_gene/&lt;/a&gt; &lt;/li&gt;&lt;/ul&gt;&#13;&#10;&lt;p&gt;Please send any questions or report any problems to snp-admin at&lt;br&gt;ncbi.nlm.nih.gov.&lt;br&gt; &lt;br&gt;Regards,&lt;br&gt; &lt;br&gt;dbSNP Production Team&lt;br&gt;November 21, 2011&lt;br&gt;National Center for Biotechnology Information (NCBI)&lt;br&gt;National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.&lt;br&gt;Help Desk: snp-admin at ncbi.nlm.nih.gov&lt;/p&gt;&#13;&#10;=================&lt;br&gt;dbSNP Announcements&lt;br&gt;=================&lt;br&gt;Email: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce&quot;&gt;http://www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce&lt;/a&gt;&lt;br&gt;RSS: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews&quot;&gt;http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews&lt;/a&gt;&#13;&#10; </description>
<pubDate>Mon, 21 Nov 2011 13:00:00 EST</pubDate>
<guid isPermaLink="false">NCBIRSSFEED_30000012</guid>
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<title>dbSNP Build 135: FTP Genotype XML and VCF download&#9;updates</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2011q4/000112.html</link>
<description>&#13;&#10;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span&gt;&lt;strong&gt;&lt;font size=3 face=&quot;Arial Black&quot;&gt;A) Human Genotype XML files for Build 135 are now available.&lt;/font&gt;&lt;/strong&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;&lt;/font&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;        &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/genotype/&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/genotype/&lt;/font&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;               &lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;        IMPORTANT RELEASE NOTE: Due to the volume of data, 1000 Genomes genotype is&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;        not loaded directly to dbSNP and therefore it&#39;s not included in dbSNP genotype&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;        XML dumps, web search, and eUtils search and retrieval systems.  We&#39;re currently&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;        developing a new system for archiving, searching, and retrieving genotype for&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;        large dataset which we hope will be available later in 2012.&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;        For now, users can download the genotype data directly from 1000 Genomes FTP&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;        site (&lt;/font&gt;&lt;a href=&quot;http://www.1000genomes.org/data&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3&gt;http://www.1000genomes.org/data&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;).  &lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;&lt;/font&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span&gt;&lt;strong&gt;&lt;font size=3 face=&quot;Arial Black&quot;&gt;B) Status updates:&lt;/font&gt;&lt;/strong&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;&lt;/font&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;        1) Human Genotype XML by Gene &lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;               &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/genotype_by_gene/&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/genotype_by_gene/&lt;/font&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;               The files are being prepared and estimated to be ready early next week.&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;&lt;/font&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;        2) Human VCF Files&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;               &lt;/font&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/&lt;/font&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;               Files are currently being QA for release next week.&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;&lt;/font&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;Please send any questions or report any problems to snp-admin at&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;ncbi.nlm.nih.gov.&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;&lt;/font&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;Regards,&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;&lt;/font&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;dbSNP Production Team&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;November 10, 2011&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;National Center for Biotechnology Information (NCBI)&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;Help Desk: snp-admin at ncbi.nlm.nih.gov&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;&lt;/font&gt;&lt;/span&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;=================&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;dbSNP Announcements&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;=================&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;Email: &lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce&quot;&gt;&lt;font size=3&gt;http://www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce&lt;/font&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;span style=&quot;font-family:&#39;Courier New&#39;&quot;&gt;&lt;font size=3&gt;RSS: &lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3&gt;http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews&lt;/font&gt;&lt;/a&gt;&lt;/span&gt;&lt;/p&gt;</description>
<pubDate>Thu, 10 Nov 2011 12:00:00 EST</pubDate>
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<title>dbSNP Build 135 Entrez and FTP Release</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2011q4/thread.html</link>
<description>&#13;&#10;&lt;p class=ExternalClassC64B6E8452924098B7F0D35BA7E02EDF&gt;&lt;strong&gt;Entrez has been updated to include dbSNP Build 135 for human based on NCBI genome build GRCh37.3. This release include new submissions from the 1000 Genomes Project Phase I release (&lt;/strong&gt;&lt;a href=&quot;http://1.usa.gov/rhf62b&quot;&gt;&lt;strong&gt;http://1.usa.gov/rhf62b&lt;/strong&gt;&lt;/a&gt;&lt;strong&gt;). &lt;/strong&gt;&lt;/p&gt;&#13;&#10;&lt;ul&gt;&#13;&#10;&lt;li&gt;&#13;&#10;Entrez Search: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp&quot;&gt;http://www.ncbi.nlm.nih.gov/snp&lt;/a&gt; &lt;/li&gt;&#13;&#10;&lt;li&gt;&#13;&#10;dbSNP Entrez eUtils Help: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/SNP/SNPeutils.htm&quot;&gt;http://www.ncbi.nlm.nih.gov/SNP/SNPeutils.htm&lt;/a&gt; &lt;/li&gt;&#13;&#10;&lt;li&gt;&#13;&#10;eUtils General Help : &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/books/NBK25500/&quot;&gt;http://www.ncbi.nlm.nih.gov/books/NBK25500/&lt;/a&gt; &lt;/li&gt;&#13;&#10;&lt;li&gt;&#13;&#10;Building Customized Data Pipelines Using the Entrez Programming Utilities (eUtils): &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/books/NBK1058/&quot;&gt;http://www.ncbi.nlm.nih.gov/books/NBK1058/&lt;/a&gt;&lt;/li&gt;&lt;/ul&gt;&#13;&#10;&lt;p class=ExternalClassC64B6E8452924098B7F0D35BA7E02EDF&gt;&lt;strong&gt;FTP files for Build 135 are now available on the ftp site (&lt;/strong&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/&quot;&gt;&lt;strong&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/&lt;/strong&gt;&lt;/a&gt;&lt;strong&gt;).  &lt;/strong&gt;&lt;/p&gt;&#13;&#10;&lt;p class=ExternalClassC64B6E8452924098B7F0D35BA7E02EDF&gt;&lt;font color=&quot;#ff0000&quot;&gt;IMPORTANT: Please see notes concerning recent updates if you downloaded human FTP files between Nov. 3, 2011 and Nov. 7, 2011&lt;/font&gt; (&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2011q4/000111.html&quot;&gt;http://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2011q4/000111.html&lt;/a&gt;).&lt;/p&gt;&#13;&#10;&lt;ul&gt;&#13;&#10;&lt;li&gt;&#13;&#10;The complete data for Build 135:Human are available at&lt;br&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/&lt;/a&gt; in multiple formats&lt;/li&gt;&#13;&#10;&lt;li&gt;&#13;&#10;&lt;strong&gt;&lt;font color=&quot;#ff0000&quot;&gt;****NOTE: Genotype XML Files****&lt;br&gt;&lt;/font&gt;&lt;/strong&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/genotype/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/genotype/&lt;/a&gt;&lt;br&gt;The genotype xml files in the above directory at are currently being prepared.   Another announcement will be sent when they&#39;re ready.&lt;/li&gt;&#13;&#10;&lt;li&gt;&#13;&#10;All formats and conventions are described in 00readme.txt file.&lt;br&gt; &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/00readme.txt&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/00readme.txt&lt;/a&gt;.&lt;/li&gt;&#13;&#10;&lt;li&gt;&#13;&#10;For those downloading SQL database format, the updated SQL schemas are here:&lt;br&gt; &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_schema&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_schema&lt;/a&gt;&lt;/li&gt;&#13;&#10;&lt;li&gt;&#13;&#10;Other organisms that are also included in this release are in the following subdirectories (listed below) under &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/&lt;/a&gt;.&lt;br&gt;bony_fish_8187&lt;br&gt;bony_fish_8235&lt;br&gt;eucalyptus_urophylla_99020&lt;br&gt;fusarium_5518&lt;br&gt;rubbertree_3981&lt;br&gt;stickleback_69293&lt;br&gt;sweet_cherry_42229&lt;/li&gt;&lt;/ul&gt;&#13;&#10;&lt;p class=ExternalClassC64B6E8452924098B7F0D35BA7E02EDF&gt;Please send any questions or report any problems to snp-admin at ncbi.nlm.nih.gov.&lt;/p&gt;&#13;&#10;&lt;p class=ExternalClassC64B6E8452924098B7F0D35BA7E02EDF&gt;Regards,&lt;/p&gt;&#13;&#10;&lt;p class=ExternalClassC64B6E8452924098B7F0D35BA7E02EDF&gt;dbSNP Production Team&lt;/p&gt;&#13;&#10;&lt;pre&gt;&lt;/pre&gt;</description>
<pubDate>Tue, 08 Nov 2011 11:00:00 EST</pubDate>
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<title>RELEASE: NCBI dbSNP Build 135 for human</title>
<link>https://www.ncbi.nlm.nih.gov/projects/SNP/docs/build135_announce.10.13.11.txt</link>
<description> &#13;&#10;RELEASE: NCBI dbSNP Build 135 for human&lt;br&gt;                         &#13;&#10;dbSNP Build 135 for human (txid 9606)&lt;br&gt;===================================&lt;br&gt;This release is based on NCBI genome build GRCh37.3 that included assembly&lt;br&gt;changes described here (&lt;a href=&quot;http://1.usa.gov/fIk86S&quot;&gt;http://1.usa.gov/fIk86S&lt;/a&gt;) and include new submissions&lt;br&gt;from 1000 Genomes Project Phase I release (&lt;a href=&quot;http://1.usa.gov/rhf62b&quot;&gt;http://1.usa.gov/rhf62b&lt;/a&gt;).&#13;&#10;dbSNP Handle    ss_cnt  rs_cnt&lt;br&gt;------------ -------  -------&lt;br&gt;1000GENOMES*  57911353 39484957&#13;&#10;*Includes Pilot 1,2,3 and Phase I June 2011 release (&lt;a href=&quot;http://bit.ly/q8a5Wy&quot;&gt;http://bit.ly/q8a5Wy&lt;/a&gt;) &#13;&#10;&lt;br&gt;Build Summary&lt;br&gt;-------------&#13;&#10; organism: Homo sapiens&lt;br&gt; tax_id: 9606 &lt;br&gt; total_ss: 178,140,838&lt;br&gt; total_rs: 52,345,594&lt;br&gt; new_ss(since b134 release on Aug.8, 2011): 167,018&lt;br&gt; new_rs(since b134 release on Aug.8, 2011): 12,632,872&#13;&#10;&lt;br&gt;Component availability dates:&#13;&#10;      Component                 Date available&lt;br&gt;      dbSNP web query           October 13, 2011&lt;br&gt;      BLAST databases           October 24, 2011 (estimated)&lt;br&gt;      FTP data                  October 24, 2011 (estimated)&lt;br&gt;      Entrez Search            October 24, 2011 (estimated)&lt;br&gt;      &lt;br&gt; &lt;br&gt;* All formats and conventions are described in&lt;br&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/00readme.txt&quot;&gt;ftp.ncbi.nih.gov/snp/00readme.txt&lt;/a&gt;. Please note that the README document is&lt;br&gt;updated periodically. &lt;br&gt;* The complete data for build 135 will be available in multiple formats by&lt;br&gt;organisms at&lt;br&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/&lt;/a&gt;  &lt;br&gt;* The complete build summary for build 135 is available&lt;br&gt;at:www.ncbi.nlm.nih.gov/SNP/snp_summary.cgi&#13;&#10;Important updates and new features: &#13;&#10;1)  About dbSNP: &lt;br&gt;Content in dbSNP is not limited to single nucleotide polymorphisms (SNPs), but&lt;br&gt;stores information about multiple small-scale variations that include&lt;br&gt;insertions/deletions, microsatellites, and non-polymorphic variants. dbSNP also&lt;br&gt;stores common and rare variations along with their genotypes and allele&lt;br&gt;frequencies. Most importantly, dbSNP includes clinically significant human&lt;br&gt;variations as well as benign polymorphisms.&#13;&#10;dbSNP also aggregates user assertions for these variations, including its&lt;br&gt;clinical assertion, minor allele frequencies, the likelihood that the variation&lt;br&gt;is a false positive, and whether the allele origin is germline or somatic. &lt;br&gt;For detail descriptions, please visit the following site:&lt;br&gt;(&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/projects/SNP/docs/rs_attributes.html&quot;&gt;http://www.ncbi.nlm.nih.gov/projects/SNP/docs/rs_attributes.html&lt;/a&gt;). &#13;&#10;&lt;br&gt;2) New Feature: Filtered VCF files&lt;br&gt;dbSNP is preparing specially filtered VCF data files to provide reasonable&lt;br&gt;subsets of dbSNP selected to act as surrogates for &#39;polymorphic&#39; or &#39;rare&#39;&lt;br&gt;variants. These subsets are defined using minor allele frequencies (MAF) and&lt;br&gt;sources (&lt;a href=&quot;http://1.usa.gov/qWA9oE&quot;&gt;http://1.usa.gov/qWA9oE&lt;/a&gt;), and the individual files include the following: 1) MAF&lt;br&gt;&amp;gt; 0.01 based on 1000 Genomes populations, 2) MAF &amp;gt; 0.01 for any population&lt;br&gt;submitted to dbSNP, 3) MAF &amp;gt; 0.01 for all populations submitted to dbSNP. A&lt;br&gt;separate announcement will be sent when these files are available on the FTP&lt;br&gt;site (&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/&lt;/a&gt;) for dbSNP human&lt;br&gt;Build 135 in a few weeks.   &#13;&#10;3) Known Issues:&#13;&#10;Due to the volume of data, 1000Genomes genotype is not loaded directly to dbSNP&lt;br&gt;so it&#39;s not reported in &amp;quot;new ss/rs with genotype&amp;quot; count.  However, the global&lt;br&gt;minor allele frequency (MAF) will be calculated and included with the build&lt;br&gt;release (&lt;a href=&quot;http://1.usa.gov/pVHRaA&quot;&gt;http://1.usa.gov/pVHRaA&lt;/a&gt;).   The genotype data can be download directly&lt;br&gt;from 1000Genomes FTP site (&lt;a href=&quot;http://www.1000genomes.org/data&quot;&gt;http://www.1000genomes.org/data&lt;/a&gt;).&#13;&#10;&lt;br&gt;dbSNP Production Team&lt;br&gt;October 13, 2011&lt;br&gt;National Center for Biotechnology Information (NCBI)&lt;br&gt;National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.&lt;br&gt;RSS: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews&quot;&gt;http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews&lt;/a&gt;&lt;br&gt;Help Desk: &lt;a href=&quot;mailto:snp-admin@ncbi.nlm.nih.gov&quot;&gt;snp-admin@ncbi.nlm.nih.gov&lt;/a&gt;&#13;&#10;&lt;br&gt; </description>
<pubDate>Thu, 13 Oct 2011 22:00:00 EST</pubDate>
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<title>RELEASE: dbSNP Build 134 Human Entrez Search</title>
<link>https://www.ncbi.nlm.nih.gov/mailman/pipermail/dbsnp-announce/2011q3/000107.html</link>
<description>&#13;&#10;&lt;span style=&quot;font-family:&#39;Courier New&#39;;font-size:10pt&quot;&gt;&lt;span&gt;&lt;font face=Verdana&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Entrez has been updated to include dbSNP build 134 for human.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Entrez Search: &lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp&quot;&gt;&lt;font size=3 face=Calibri&gt;http://www.ncbi.nlm.nih.gov/snp&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP Entrez eUtils Help:&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;http://www.ncbi.nlm.nih.gov/SNP/SNPeutils.htm&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;eUtils General Help :&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;http://www.ncbi.nlm.nih.gov/books/NBK25500/&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Building Customized Data Pipelines Using the Entrez Programming Utilities (eUtils):&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;http://www.ncbi.nlm.nih.gov/books/NBK1058/&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Please contact info at ncbi.nlm.nih.gov&lt;span&gt;  &lt;/span&gt;or snp-admin at ncbi.nlm.nih.gov for technical questions&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;regarding the Entrez search and retrieval system.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3 face=Calibri&gt;&lt;/font&gt; &lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Regards,&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP Production Team&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;September 1, 2011&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt;tab-stops:45.8pt 91.6pt 137.4pt 183.2pt 229.0pt 274.8pt 320.6pt 366.4pt 412.2pt 458.0pt 503.8pt 549.6pt 595.4pt 641.2pt 687.0pt 732.8pt&quot; class=MsoNormal&gt;&lt;/font&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;</description>
<pubDate>Thu, 01 Sep 2011 17:00:00 EST</pubDate>
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<title>dbSNP build 134 FTP dumps</title>
<link>ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/</link>
<description>&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;FTP files for Build 134:Human are now available on the ftp site.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;--&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;The complete data for Build 134:Human are available at&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;span style=&quot;&quot;&gt;&lt;font size=3 face=Calibri&gt;    &lt;/font&gt;&lt;/span&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt; in multiple formats.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;--&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;All formats and conventions are described in 00readme.txt file.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;span style=&quot;&quot;&gt;&lt;font size=3 face=Calibri&gt;    &lt;/font&gt;&lt;/span&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/00readme.txt&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/00readme.txt&lt;/font&gt;&lt;/a&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;--&lt;span style=&quot;&quot;&gt;  &lt;/span&gt;For those downloading SQL database format, the updated SQL schemas&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span style=&quot;&quot;&gt;    &lt;/span&gt;are here:&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;span style=&quot;&quot;&gt;&lt;font size=3 face=Calibri&gt;    &lt;/font&gt;&lt;/span&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_schema&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_schema&lt;/font&gt;&lt;/a&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Please send any questions or report any problems to snp-admin at ncbi.nlm.nih.gov.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;Regards,&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3 face=Calibri&gt; &lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 0pt&quot; class=MsoPlainText&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;dbSNP Production Team&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;</description>
<pubDate>Fri, 26 Aug 2011 00:00:00 EST</pubDate>
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<title>dbSNP Build 134 VCF release</title>
<link>ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/000-README.html</link>
<description>&#13;&#10;dbSNP Build 134 VCF files for human are available on the FTP site.&#13;&#10;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/&lt;/a&gt;&#13;&#10; &#13;&#10;Please contact (&lt;a href=&quot;mailto:snp-admin@ncbi.nlm.nih.gov&quot;&gt;snp-admin@ncbi.nlm.nih.gov&lt;/a&gt;) if you have any questions or to report a problem.&#13;&#10; &#13;&#10; </description>
<pubDate>Wed, 17 Aug 2011 13:00:00 EST</pubDate>
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<title>RELEASE: NCBI dbSNP Build 134 for human</title>
<link>https://www.ncbi.nlm.nih.gov/projects/SNP/</link>
<description>&#13;&#10;                         &#13;&#10;dbSNP Build 134 for human (txid 9606)&lt;br&gt;===================================&lt;br&gt;This release is based on Genome Reference Consortium (GRC) assembly GRCh37.p2, &lt;br&gt;which is a patch release of GRCh37 that has minor changes described in a README &lt;br&gt;document(&lt;a href=&quot;http://bit.ly/mQjIii&quot;&gt;http://bit.ly/mQjIii&lt;/a&gt;).  dbSNP build 134 includes new submissions from &lt;br&gt;the 1000 Genomes Project interim phase I release(dbSNP Handle: 1000Genomes)and &lt;br&gt;the NHLBI Exome Sequencing Project (dbSNP handle: NHLBI-ESP).&#13;&#10;&lt;br&gt;handle          ss_cnt  rs_cnt&lt;br&gt;-------  -------  -------&lt;br&gt;1000GENOMES*  15893853 14877247&lt;br&gt;NHLBI-ESP         526799 526799&#13;&#10;&lt;br&gt;Build 134 added 18 new organisms [6,038,585 submissions(ss#)]to dbSNP.  &lt;br&gt;Overall, with these new organisms included, build 134 added 108,182,122 new &lt;br&gt;ss# to dbSNP representing a total of 86 organisms.  &#13;&#10;&lt;br&gt; Component availability dates:&#13;&#10;      Component                 Date available&lt;br&gt;      dbSNP web query           August 15, 2011&lt;br&gt;      BLAST databases           August 22, 2011 (estimated)&lt;br&gt;      FTP data                  August 22, 2011 (estimated)&lt;br&gt;      Entrez indexing           August 22, 2011 (estimated)&lt;br&gt;      &lt;br&gt; &lt;br&gt;* All formats and conventions are described in &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/00readme.txt&quot;&gt;ftp.ncbi.nih.gov/snp/00readme.txt&lt;/a&gt;. &lt;br&gt;Please note that the README document is updated only periodically. &#13;&#10;* The complete data for build 134 will be available in multiple formats sorted by&lt;br&gt;organism at &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/&lt;/a&gt;  &#13;&#10;* The complete build summary for 134 is available &lt;br&gt;at: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/SNP/snp_summary.cgi&quot;&gt;www.ncbi.nlm.nih.gov/SNP/snp_summary.cgi&lt;/a&gt;&#13;&#10;Recent updates and new features: &#13;&#10;1) dbSNP logo change (&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/projects/SNP/&quot;&gt;http://www.ncbi.nlm.nih.gov/projects/SNP/&lt;/a&gt;)&#13;&#10;As there has been confusion about the types of variations dbSNP actually contains, &lt;br&gt;the dbSNP logo text was changed from &amp;quot;Single Nucleotide Polymorphism&amp;quot; to &lt;br&gt;&amp;quot;Short Genetic Variations&amp;quot;.  We hope that this change will reflect the wide &lt;br&gt;range of dbSNP&#39;s variation content, and thereby prevent any future misunderstandings.&#13;&#10;In spite of its name, dbSNP is not limited to single nucleotide polymorphisms&lt;br&gt;(SNPs), but stores information about multiple small-scale variations that&lt;br&gt;include insertions/deletions, microsatellites, and non-polymorphic variants.&lt;br&gt;dbSNP also stores common and rare variations along with their genotypes and&lt;br&gt;allele frequencies. &#13;&#10;Most importantly, dbSNP includes clinically significant variations, and should &lt;br&gt;NOT be assumed to hold only benign polymorphisms.&#13;&#10;&lt;br&gt;2) New refSNP Attributes &#13;&#10;dbSNP has added new attributes that allow searching and filtering of human variation &lt;br&gt;by clinical significance, allele origin, minor allele frequency, and suspected false&lt;br&gt;SNPs.  See &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/projects/SNP/docs/rs_attributes.html&quot;&gt;http://www.ncbi.nlm.nih.gov/projects/SNP/docs/rs_attributes.html&lt;/a&gt;&lt;br&gt;for more information and examples of the changes these filters have on RefSNP pages.&#13;&#10;&lt;br&gt;3) New dbSNP News Web Feed&#13;&#10;A new RSS feed for brief announcements that highlight recent enhancements and changes &lt;br&gt;to the dbSNP database is now available at: &lt;br&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews&quot;&gt;http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews&lt;/a&gt;&#13;&#10;&lt;br&gt;4) Gene ID added to VCF (Variant Call Format) for human&#13;&#10;Data in the Variant Call Format is available on the dbSNP ftp site:&lt;br&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF&lt;/a&gt;&#13;&#10;For more information see:&lt;br&gt;&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/000-README.txt&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/v4.0/000-README.txt&lt;/a&gt;&lt;br&gt;and &lt;br&gt;&lt;a href=&quot;http://www.1000genomes.org/node/101&quot;&gt;http://www.1000genomes.org/node/101&lt;/a&gt; &#13;&#10; &#13;&#10;&lt;br&gt;dbSNP Production Team&lt;br&gt;August 15, 2011&lt;br&gt;National Center for Biotechnology Information (NCBI)&lt;br&gt;National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.&#13;&#10;&lt;br&gt; </description>
<pubDate>Mon, 15 Aug 2011 15:00:00 EST</pubDate>
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<title>dbSNP new attributes</title>
<link>https://www.ncbi.nlm.nih.gov/projects/SNP/docs/rs_attributes.html</link>
<description>&#13;&#10;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;New attributes have been added to dbSNP to allow search and filtering of human variation by the following characteristics:&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;b&gt;&lt;span style=&quot;color:black;font-size:9pt&quot;&gt;&lt;span&gt;&lt;font face=Calibri&gt;1.&lt;/font&gt;&lt;span style=&quot;font:7pt &#39;Times New Roman&#39;&quot;&gt;        &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/b&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;b&gt;&lt;span style=&quot;color:black&quot;&gt;Allele Origin:  &lt;/span&gt;&lt;/b&gt;&lt;span style=&quot;color:black&quot;&gt;The rs report summarizes the reported origin(s) of the variant allele &lt;/span&gt;asserted by each submitter for the submitted SNP (ss) . Current values are germline, somatic, and unknown.  &lt;/font&gt;&lt;/font&gt;&lt;span style=&quot;color:black&quot;&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;      &lt;/font&gt;&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span style=&quot;color:black&quot;&gt;&lt;/span&gt;&lt;b&gt;&lt;span style=&quot;color:black&quot;&gt;&lt;span&gt;&lt;font size=3 face=Calibri&gt;2.&lt;/font&gt;&lt;span style=&quot;font:7pt &#39;Times New Roman&#39;&quot;&gt;       &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/b&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;b&gt;&lt;span style=&quot;color:black&quot;&gt;Clinical significance:   &lt;/span&gt;&lt;/b&gt;The significance of the indicated allele.&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;span class=apple-style-span&gt;&lt;b&gt;&lt;span&gt;&lt;span&gt;&lt;font size=3 face=Calibri&gt;3.&lt;/font&gt;&lt;span style=&quot;font:7pt &#39;Times New Roman&#39;&quot;&gt;       &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/b&gt;&lt;/span&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;b&gt;&lt;span style=&quot;color:black&quot;&gt;Global minor allele frequency (MAF):  &lt;/span&gt;&lt;/b&gt;&lt;span style=&quot;color:black&quot;&gt;dbSNP is reporting the &lt;/span&gt;minor allele frequency for each rs included in a default global population. Since this is being provided to distinguish common polymorphism from rare variants, the MAF is actually the second most frequent allele value. In other words, if there are 3 alleles, with frequencies of 0.50, 0.49, and 0.01, the MAF will be reported as 0.49. The current default global population is &lt;span class=apple-style-span&gt;&lt;span style=&quot;color:black&quot;&gt;1000Genome phase 1 genotype data&lt;/span&gt; from 629 worldwide individuals, &lt;/span&gt;&lt;span&gt;released in the 08-04-2010 dataset&lt;/span&gt;&lt;span class=apple-style-span&gt;&lt;span&gt;. &lt;/span&gt;&lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;&#13;&#10;&lt;p style=&quot;margin:0in 0in 10pt&quot; class=MsoNormal&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;span class=apple-style-span&gt;&lt;span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;b&gt;&lt;span style=&quot;color:black&quot;&gt;&lt;span&gt;&lt;font size=3 face=Calibri&gt;4.&lt;/font&gt;&lt;span style=&quot;font:7pt &#39;Times New Roman&#39;&quot;&gt;       &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/b&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;&lt;b&gt;&lt;span style=&quot;color:black&quot;&gt;Suspect:  &lt;/span&gt;&lt;/b&gt;&lt;span style=&quot;color:black&quot;&gt;Variation suspected to be false positive due to &lt;/span&gt;artifacts of the presence of a paralogous sequence in the genome&lt;span style=&quot;color:black&quot;&gt;  (&lt;/span&gt;&lt;/font&gt;&lt;/font&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/pubmed/19877174&quot;&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;font-size:9pt&quot;&gt;&lt;font color=&quot;#0000ff&quot;&gt;Musumeci et al. 2010&lt;/font&gt;&lt;/span&gt;&lt;/a&gt;&lt;span class=apple-style-span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black;font-size:9pt&quot;&gt;) (&lt;/span&gt;&lt;/span&gt;&lt;a href=&quot;http://www.ncbi.nlm.nih.gov/pubmed/21030649&quot;&gt;&lt;font color=&quot;#0000ff&quot; size=3 face=Calibri&gt;Sudmant et al. 2010&lt;/font&gt;&lt;/a&gt;&lt;span class=apple-style-span&gt;&lt;span style=&quot;font-family:&#39;Arial&#39;,&#39;sans-serif&#39;;color:black;font-size:9pt&quot;&gt;) &lt;/span&gt;&lt;/span&gt;&lt;span style=&quot;color:black&quot;&gt;&lt;font size=3&gt;&lt;font face=Calibri&gt;or evidence suggested sequencing error or computation artifacts.&lt;b&gt;  &lt;/b&gt;&lt;/font&gt;&lt;/font&gt;&lt;/span&gt;&lt;/p&gt;</description>
<pubDate>Thu, 09 Jun 2011 16:00:00 EST</pubDate>
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<title>RELEASE: NCBI dbSNP Build 133 for cow and updates for grape, macaque, and soybean</title>
<link>https://www.ncbi.nlm.nih.gov/projects/SNP/docs/build133.txt</link>
<description>&#13;&#10;&lt;span style=&quot;text-transform:none;text-indent:0px;border-collapse:separate;font:medium &#39;Times New Roman&#39;;white-space:normal;letter-spacing:normal;color:rgb(0,0,0);word-spacing:0px&quot; class=Apple-style-span&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;&lt;strong&gt;&lt;u&gt;dbSNP Build 133 for cow (txid 9913)&#13;&#10;&lt;/u&gt;&lt;/strong&gt;This release is based on NCBI genome build 5.2 that included Btau_4.2 and&#13;&#10;UMD_3.1 assemblies. A total of 9493419 Reference SNP (rs) are in this release&#13;&#10;including more than 5 million new rs added since the last release.&lt;/pre&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;&lt;span style=&quot;text-transform:none;text-indent:0px;border-collapse:separate;font:medium &#39;Times New Roman&#39;;white-space:normal;letter-spacing:normal;color:rgb(0,0,0);word-spacing:0px&quot; class=Apple-style-span&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;&lt;strong&gt;&lt;font color=&quot;#000000&quot;&gt;&lt;u&gt;Updates for grape, macaque, and soybean&#13;&#10;&lt;/u&gt;&lt;/font&gt;&lt;/strong&gt;Minor updates with no additional new annotations were performed on grape (txid&#13;&#10;29760), macaque (txid 9541), and soybean (txid 3847) to include these organisms&#13;&#10;in Entrez search and the FTP dumps.&#13;&#10;&lt;br&gt;&#13;&#10;&lt;strong&gt;Entrez Search&#13;&#10;&lt;/strong&gt;Cow: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid9913&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid9913&lt;/a&gt; &lt;/pre&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;Grape: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid29760&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid29760&lt;/a&gt;&lt;/pre&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;Macaque: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid9541&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid9541&lt;/a&gt;&lt;/pre&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;Soybean: &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/snp?Term=txid3847&quot;&gt;http://www.ncbi.nlm.nih.gov/snp?Term=txid3847&#13;&#10;&lt;/a&gt;&lt;/pre&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;&lt;strong&gt;&lt;/strong&gt; &lt;/pre&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;&lt;strong&gt;FTP&lt;/strong&gt;&lt;/pre&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;Cow: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/cow_9913&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/cow_9913&lt;/a&gt;&lt;/pre&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;Grape: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/grape_29760/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/grape_29760/&lt;/a&gt;&lt;/pre&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;Macaque: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/macaque_9541&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/macaque_9541&lt;/a&gt;&lt;/pre&gt;&lt;pre style=&quot;word-wrap:break-word;white-space:pre-wrap&quot;&gt;Soybean: &lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/soybean_3847&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/soybean_3847&lt;/a&gt;&lt;/pre&gt;&lt;/span&gt;&lt;/pre&gt;&lt;/span&gt;</description>
<pubDate>Wed, 23 Mar 2011 10:00:00 EST</pubDate>
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<title>Gene report FTP site update</title>
<link>ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/gene_report</link>
<description>Gene report FTP site (&lt;a href=&quot;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/gene_report/&quot;&gt;ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/gene_report/&lt;/a&gt;) &lt;br&gt;has been updated on Feb 1st, 2011. It now has 3416 genes (compared with 3171 before&lt;br&gt; the udpate).&lt;br&gt;</description>
<pubDate>Wed, 02 Feb 2011 11:00:00 EST</pubDate>
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<title>New dbSNP BLAST page</title>
<link>https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&amp;BLAST_SPEC=SNP&amp;BLAST_PROGRAMS=megaBlast&amp;PAGE_TYPE=BlastSearch&amp;LINK_LOC=dbSNP_homepage</link>
<description>&#13;&#10;&lt;span style=&quot;line-height:normal;text-transform:none;font-variant:normal;font-style:normal;text-indent:0px;border-collapse:separate;white-space:normal;letter-spacing:normal;color:rgb(0,0,0);font-size:medium;font-weight:normal;word-spacing:0px&quot; class=Apple-style-span&gt;&lt;span style=&quot;font-size:12px&quot; class=Apple-style-span&gt;&lt;pre&gt;&lt;font face=Arial&gt;The New &lt;/font&gt;&lt;a href=&quot;http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&amp;amp;BLAST_SPEC=SNP&amp;amp;BLAST_PROGRAMS=megaBlast&amp;amp;PAGE_TYPE=BlastSearch&amp;amp;LINK_LOC=dbSNP_homepage&quot;&gt;&lt;font face=Arial&gt;dbSNP BLAST&lt;/font&gt;&lt;/a&gt;&lt;font face=Arial&gt; page is now available with a new user interface. &#13;&#10;It has been designed to be consistent with other NCBI BLAST Web Pages&#13;&#10;and more intuitive to use with easier access to many different organisms. &#13;&#10;Please update your bookmarks as the old site&#13;&#10;(&lt;/font&gt;&lt;a style=&quot;color:rgb(204,102,0)&quot; href=&quot;http://www.ncbi.nlm.nih.gov/projects/SNP/snp_blastByOrg.cgi&quot;&gt;&lt;font face=Arial&gt;http://www.ncbi.nlm.nih.gov/projects/SNP/snp_blastByOrg.cgi&lt;/font&gt;&lt;/a&gt;&lt;font face=Arial&gt;) &#13;&#10;will be retired soon from service. &lt;/font&gt;&lt;/pre&gt;&lt;/span&gt;&lt;/span&gt;</description>
<category>New Feature</category>
<pubDate>Tue, 01 Feb 2011 11:00:00 EST</pubDate>
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