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<title>Plant and Animal Genome XXIII: Schedule of NCBI Exhibit, Presentations and Posters</title>
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<h2>
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<strong>Plant and Animal Genome XXIII: Schedule of the NCBI Exhibit Booth, Presentations, Posters and Workshop</strong></h2>
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<p>
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<a href="http://www.intlpag.org/">PAGXIII Conference Website</a><br />
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Location: Town and Country Hotel, San Diego, California USA<br />
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January 10-14, 2015</p>
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<h3>
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<strong>NCBI Staff will be at our Exhibit Booth #618:</strong></h3>
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<ul>
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<li>
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Sunday, January 11 – 3:00 PM - 8:30 PM</li>
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<li>
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Monday, January 12 – 9:30 AM - 5:00 PM</li>
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<li>
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Tuesday, January 13 – 9:30 AM - 3:00 PM</li>
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</ul>
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<p>
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<a target="_blank" href="/education/pag2015/exhibitmap">Map of Exhibit floor</a></p>
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<br />
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<h3>
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<strong>Saturday, January 10</strong></h3>
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<p>
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<strong>Sequence Viewer and Genome Workbench - Sequence Display and Analysis Tool<br />
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Kim D. Pruitt</strong><br />
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Computer Demos 1 C04: 2:30 PM – 2:50 PM, Room: California</p>
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<p>
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The National Center for Biotechnology Information (NCBI) has developed two companion tools to display and analyze sequence and alignment data. Sequence Viewer is an online graphical display tool that offers configurable options for displaying NCBI as well as imported BLAST or local data. This online tool includes options to add and configure display tracks, zoom and pan the display, add (and name) markers, search, download the displayed sequence, and save a high-resolution print friendly PDF file that can be edited in popular image editing tools for figure preparation.... [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper15634.html">Full abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Pruitt_C04.pdf">Slides-PDF</a>]</p>
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<br />
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<h3>
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<strong>Sunday, January 11</strong></h3>
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<p>
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<strong>Equine Genome Resources at National Center for Biotechnology Information<br />
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Shashikant Pujar</strong><br />
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Equine 2 Workshop W273: 8:00 AM – 8:15 AM, Room: Royal Palm Salon 5-6</p>
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<p>
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NCBI's Eukaryotic Genome Annotation generates comprehensive sets of genes, transcripts and proteins for finished and unfinished public genome assemblies of a wide range of taxa among invertebrates, vertebrates and plants. Currently, two equine genome annotations (E. caballus and E. przewalskii) are represented in NCBI’s genome resources. Both these genomes incorporate improved features of the annotation pipeline, including the use of RNA-seq data for transcript model prediction. The annotations provide content to other NCBI resources such as Nucleotide, Protein, Blast, Gene and Map Viewer....[<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper17637.html">Full abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Pujar_W273.pdf">Slides-PDF</a>]</p>
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<br />
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<h3>
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<strong>Monday, January 12</strong></h3>
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<p>
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<strong>Posters</strong>: 10:00 AM – 11:30 AM, Room: Exhibit Hall</p>
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<hr />
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<p>
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<strong>Improving the Flow of Data to NCBI Sequence Repositories, SRA and GenBank<br />
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Ilene Mizrachi</strong><br />
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P1112 [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper16973.html">Abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Mizrachi_poster.pdf">Poster-PDF</a>]</p>
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<p>
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<strong>National Center for Biotechnology Information Resources for Plant Genomics<br />
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Brian Smith-White</strong><br />
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P1120 [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper15708.html">Abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Smith-White_poster.pdf">Poster-PDF</a>]</p>
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<p>
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<strong>Sequence Viewer and Genome Workbench - Sequence Display and Analysis Tools for Eukaryotes and Prokaryotes<br />
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Kim D. Pruitt</strong><br />
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P1142 [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper15645.html">Abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Pruitt_posterP1142.pdf">Poster-PDF</a>]</p>
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<br />
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<h3>
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<strong>Monday, January 12</strong></h3>
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<p>
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<strong><a href="//pag.confex.com/pag/xxiii/webprogram/Session2671.html">NCBI Genome Resources Workshop</a><br />
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Moderators/Organizers: Kim D. Pruitt and Tatiana Tatusova</strong><br />
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12:50 pm - 3:00 pm, Room: Sunset - Meeting House</p>
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<p>
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<strong><em>This workshop provides an overview of several NCBI genome resources, updates to the NCBI Eukaryotic Genome Annotation pipeline, an annual report on the amount of genome sequencing data available, and information on how to access genomes and their annotation.</em></strong></p>
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<hr />
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<p>
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<strong>Improving the Flow of Data to National Center of Biotechnology Information Sequence Repositories, SRA and Genbank - All Organisms<br />
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Ilene Mizrachi</strong><br />
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12:50 PM – 1:15 PM</p>
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<p>
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NCBI hosts repositories like SRA and GenBank for the archiving of DNA and RNA sequence data, annotations and associated metadata. These repositories have experienced significant growth in data deposition over the past few years. A Submission Portal (http://submit.ncbi.nlm.nih.gov) is being developed to streamline the submission of sequence data and facilitate deposition of rich descriptive information about the biological sample and experimental metadata. Researchers can submit both the raw sequence reads for both genomic and RNA-Seq studies to SRA (Sequence Read Archive), as well as the assemblies that are derived from these reads to the WGS (Whole Genome Shotgun) and TSA (Transcriptome Shotgun Assembly} resources. There are programmatic and interactive web interfaces to the portal for both the informatics-rich genome center and the individual scientists....[<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper14136.html">Full abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Mizrachi_W512.pdf">Slides-PDF</a>]</p>
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<p>
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<strong>Variation at NCBI: Resources, Tools and Submissions<br />
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Jennifer Lee</strong><br />
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1:15 PM – 1:40 PM</p>
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<p>
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We will be summarizing the status of NCBI variation resources and tools, including the Variation resources, Variation Reporter, Variation Viewer, Remap Service and Variation Submission....[<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper14137.html">Full abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Lee_W513.pdf">Slides-PDF</a>]</p>
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<p>
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<strong>Update on the Eukaryotic Genome Annotation Pipeline<br />
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Francoise Thibaud-Nissen</strong><br />
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1:40 PM – 2:05 PM</p>
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<p>
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The NCBI Eukaryotic Genome Annotation Pipeline (www.ncbi.nlm.nih.gov/genome/annotation_euk/) provides content for various NCBI resources including RefSeq sequence databases, Gene, BLAST databases and the Map Viewer genome browser. As of November 1st, 2014 the pipeline has been used to annotate over 180 organisms, 100 of them with the help of RNA-Seq data. The pipeline uses a modular framework for the automated execution of all annotation tasks. Core components of the pipeline are the Splign and ProSplign alignment programs and Gnomon, an alignment- and HMM-based gene prediction program, developed at NCBI.....[<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper14138.html">Full abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Thibaud-Nissen_W514.pdf">Slides-PDF</a>]</p>
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<p>
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<strong>From Genes to Genomes – New Features and Data Access<br />
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Kim D. Pruitt</strong><br />
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2:05 PM – 2:30 PM</p>
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<p>
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||
The National Center for Biotechnology Information (NCBI) provides several resources to facilitate access to genomes and their annotations. These resources provide a stable identifier and meta-data for assembled genomes (Assembly), a portal to browse available genome-scale data (Genome), gene-specific report pages that include an interactive genome browser (Gene), and comprehensive access to genomes and annotation data via file transfer protocol (FTP). This presentation will highlight recent changes to these resources including updates to NCBI’s Gene resource and will include examples illustrating how to access new information content. [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper14139.html">Full abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Pruitt_W515.pdf">Slides-PDF</a>]</p>
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|
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<p>
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<strong>Annual Report on the Eukaryotic Genome Annotation<br />
|
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Tatiana Tatusova</strong><br />
|
||
2:30 PM – 3:00 PM</p>
|
||
|
||
|
||
<p>
|
||
This presentation will provide an overview on the current number, status, and data availability for eukaryotic genome sequencing projects. [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper14140.html">Online abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Tatusova_W516.pdf">Slides-PDF</a>]</p>
|
||
|
||
|
||
<br />
|
||
|
||
|
||
<h3>
|
||
<strong>Monday, January 12</strong></h3>
|
||
|
||
|
||
<p>
|
||
<strong>Posters</strong>: 3:00 PM – 4:30 PM, Room: Exhibit Hall</p>
|
||
|
||
|
||
<hr />
|
||
|
||
|
||
<p>
|
||
<strong>New Developments in the NCBI Eukaryotic Genome Annotation Pipeline<br />
|
||
Francoise Thibaud-Nissen</strong><br />
|
||
P0051 [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper16364.html">Abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Thibaud-Nissen_poster.pdf">Poster-PDF</a>]</p>
|
||
|
||
|
||
<p>
|
||
<strong>Genomic Resources for Arabidopsis Research at NCBI<br />
|
||
Anjana Raina Vatsan</strong><br />
|
||
P0791 [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper15995.html">Abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Vatsan_poster.pdf">Poster-PDF</a>]</p>
|
||
|
||
|
||
<p>
|
||
<strong>From Genes to Genomes – New Features and Data Access<br />
|
||
Kim D. Pruitt</strong><br />
|
||
P1105 [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper17420.html">Abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Pruitt_posterP1105.pdf">Poster-PDF</a>]</p>
|
||
|
||
|
||
<p>
|
||
<strong>dbSNP and dbVar: NCBI Databases of Simple and Structural Variations<br />
|
||
Lon Phan</strong><br />
|
||
P1109 [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper16208.html">Abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Phan_poster.pdf">Poster-PDF</a>]</p>
|
||
|
||
|
||
<p>
|
||
<strong>Annotation of Laurasiatheria Genomes By National Center for Biotechnology Information (NCBI)<br />
|
||
Shashikant Pujar</strong><br />
|
||
P1115 [<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper16089.html">Abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Pujar_poster.pdf">Poster-PDF</a>]</p>
|
||
|
||
|
||
<br />
|
||
|
||
|
||
<h3>
|
||
<strong>Tuesday, January 13</strong></h3>
|
||
|
||
|
||
<p>
|
||
<strong>National Center for Biotechnology Information Resources for Plant Genomic<br />
|
||
Brian Smith-White</strong><br />
|
||
Computer Demos 3 C214: 12:00 PM – 12:15 PM, Room: California</p>
|
||
|
||
|
||
<p>
|
||
Plant genomics is a simple expansion of the scope of genomics at the National Center for Biotechnology Information (NCBI). NCBI provides the tools for storage of and analysis of nucleotide sequence such as, respectively, GenBank and BLAST and the capability to provide evidence-based annotation of RefSeq genome sequence. In addition, genomics at NCBI includes NCBI-curated resources such as 1) RefSeq, 2) Entrez Probes, and 3) Entrez Gene, as well as databases and services....[<a href="https://pag.confex.com/pag/xxiii/webprogram/Paper15697.html">Full abstract</a>] [<a href="https://ftp.ncbi.nlm.nih.gov/pub/education/Meeting_Presentations/2015/PAG2015/PAG_2015_Smith-White_C21.pdf">Slides-PDF</a>]</p>
|
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||
<div class="col-lg-3 col-12 centered-lg">
|
||
<p><a href="https://www.nlm.nih.gov/web_policies.html" class="text-white">Web Policies</a><br />
|
||
<a href="https://www.nih.gov/institutes-nih/nih-office-director/office-communications-public-liaison/freedom-information-act-office" class="text-white">FOIA</a><br />
|
||
<a href="https://www.hhs.gov/vulnerability-disclosure-policy/index.html" class="text-white" id="vdp">HHS Vulnerability Disclosure</a></p>
|
||
</div>
|
||
<div class="col-lg-3 col-12 centered-lg">
|
||
<p><a class="supportLink text-white" href="https://support.nlm.nih.gov/">Help</a><br />
|
||
<a href="https://www.nlm.nih.gov/accessibility.html" class="text-white">Accessibility</a><br />
|
||
<a href="https://www.nlm.nih.gov/careers/careers.html" class="text-white">Careers</a></p>
|
||
</div>
|
||
</div>
|
||
<div class="row">
|
||
<div class="col-lg-12 centered-lg">
|
||
<nav class="bottom-links">
|
||
<ul class="mt-3">
|
||
<li>
|
||
<a class="text-white" href="//www.nlm.nih.gov/">NLM</a>
|
||
</li>
|
||
<li>
|
||
<a class="text-white" href="https://www.nih.gov/">NIH</a>
|
||
</li>
|
||
<li>
|
||
<a class="text-white" href="https://www.hhs.gov/">HHS</a>
|
||
</li>
|
||
<li>
|
||
<a class="text-white" href="https://www.usa.gov/">USA.gov</a>
|
||
</li>
|
||
</ul>
|
||
</nav>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</section>
|
||
<script type="text/javascript" src="/portal/portal3rc.fcgi/rlib/js/InstrumentOmnitureBaseJS/InstrumentNCBIConfigJS/InstrumentNCBIBaseJS/InstrumentPageStarterJS.js?v=1"> </script>
|
||
<script type="text/javascript" src="/portal/portal3rc.fcgi/static/js/hfjs2.js"> </script>
|
||
</div>
|
||
</div>
|
||
<!--/.footer-->
|
||
<p class="last-updated small">Last updated: 2015-01-27T13:48:54-05:00</p>
|
||
</div>
|
||
<!--/.page-->
|
||
</div>
|
||
<!--/.wrap-->
|
||
<span class="PAFAppResources"></span>
|
||
|
||
|
||
</div><!-- /.twelve_col -->
|
||
</div>
|
||
<!-- /.grid -->
|
||
|
||
|
||
|
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<!-- usually for JS scripts at page bottom -->
|
||
<span class="pagefixtures"></span>
|
||
|
||
|
||
<!-- CE8B5AF87C7FFCB1_0191SID /projects/staticsites/education/education_3@1.7 portal104 v4.1.r689238 Tue, Oct 22 2024 16:10:51 -->
|
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<span id="portal-csrf-token" style="display:none" data-token="CE8B5AF87C7FFCB1_0191SID"></span>
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<script type="text/javascript" src="//static.pubmed.gov/portal/portal3rc.fcgi/4147834/js/3879255/4121861/4005676.js" snapshot="education"></script></body>
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</html>
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