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td-sidebar-link__section tree-root" id=m-datasetsdocsv2><span>Documentation</span></a><ul class=ul-1><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv2getting_started-li><a href=/datasets/docs/v2/getting_started/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv2getting_started><span>Getting started</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv2command-line-tools-li><a href=/datasets/docs/v2/command-line-tools/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__section" id=m-datasetsdocsv2command-line-tools><span>Command line tools</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2command-line-toolsdownload-and-install-li><a href=/datasets/docs/v2/command-line-tools/download-and-install/ title="Download and Install" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv2command-line-toolsdownload-and-install><span>Download and install</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2command-line-toolsusing-dataformat-li><a href=/datasets/docs/v2/command-line-tools/using-dataformat/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__section" id=m-datasetsdocsv2command-line-toolsusing-dataformat><span>Using dataformat</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2command-line-toolsusing-dataformatgene-data-reports-li><a href=/datasets/docs/v2/command-line-tools/using-dataformat/gene-data-reports/ title="Gene Data Reports" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv2command-line-toolsusing-dataformatgene-data-reports><span>Gene data reports</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2command-line-toolsusing-dataformatgenome-data-reports-li><a href=/datasets/docs/v2/command-line-tools/using-dataformat/genome-data-reports/ title="Genome Data Reports" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv2command-line-toolsusing-dataformatgenome-data-reports><span>Genome data reports</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2command-line-toolsusing-dataformatvirus-data-reports-li><a href=/datasets/docs/v2/command-line-tools/using-dataformat/virus-data-reports/ title="Virus Data Reports" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv2command-line-toolsusing-dataformatvirus-data-reports><span>Virus data reports</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv2how-tos-li><a href=/datasets/docs/v2/how-tos/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__section" id=m-datasetsdocsv2how-tos><span>How-To Guides</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2how-tosgenes-li><a href=/datasets/docs/v2/how-tos/genes/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__section" id=m-datasetsdocsv2how-tosgenes><span>Genes</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosgenesget-gene-metadata-li><a href=/datasets/docs/v2/how-tos/genes/get-gene-metadata/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv2how-tosgenesget-gene-metadata><span>Get gene metadata</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosgenesdownload-gene-data-package-li><a href=/datasets/docs/v2/how-tos/genes/download-gene-data-package/ title="Download a gene data package" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv2how-tosgenesdownload-gene-data-package><span>Download genes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosgenesdownload-ortholog-data-package-li><a href=/datasets/docs/v2/how-tos/genes/download-ortholog-data-package/ title="Download an ortholog data package" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv2how-tosgenesdownload-ortholog-data-package><span>Download orthologs</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2how-tosgenomes-li><a href=/datasets/docs/v2/how-tos/genomes/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__section" id=m-datasetsdocsv2how-tosgenomes><span>Genomes</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosgenomesget-genome-metadata-li><a href=/datasets/docs/v2/how-tos/genomes/get-genome-metadata/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tosgenomesget-genome-metadata><span>Get genome metadata</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosgenomesdownload-genome-li><a href=/datasets/docs/v2/how-tos/genomes/download-genome/ title="Download a genome data package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tosgenomesdownload-genome><span>Download genome data</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosgenomeslarge-download-li><a href=/datasets/docs/v2/how-tos/genomes/large-download/ title="Download large genome data packages" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tosgenomeslarge-download><span>Large genome downloads</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2how-tostaxonomy-li><a href=/datasets/docs/v2/how-tos/taxonomy/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2how-tostaxonomy><span>Taxonomy</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tostaxonomytaxonomy-li><a href=/datasets/docs/v2/how-tos/taxonomy/taxonomy/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tostaxonomytaxonomy><span>Get taxonomy metadata</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2how-tosvirus-li><a href=/datasets/docs/v2/how-tos/virus/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2how-tosvirus><span>Virus</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosvirusinfluenza-metadata-li><a href=/datasets/docs/v2/how-tos/virus/influenza-metadata/ title="Get Alphainfluenza virus genome metadata" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tosvirusinfluenza-metadata><span>Get Alphainfluenza virus metadata</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosvirusvirus-metadata-li><a href=/datasets/docs/v2/how-tos/virus/virus-metadata/ title="Get virus genome metadata" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tosvirusvirus-metadata><span>Get virus metadata</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosvirusvirus-download-li><a href=/datasets/docs/v2/how-tos/virus/virus-download/ title="Download a virus genome data package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tosvirusvirus-download><span>Download virus genomes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosvirusget-influenza-genomes-li><a href=/datasets/docs/v2/how-tos/virus/get-influenza-genomes/ title="Download an Alphainfluenza genome data package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tosvirusget-influenza-genomes><span>Download Alphainfluenza genomes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosvirusget-sars2-genomes-li><a href=/datasets/docs/v2/how-tos/virus/get-sars2-genomes/ title="Download a SARS-CoV-2 genome data package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tosvirusget-sars2-genomes><span>Download SARS-CoV-2 genomes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosvirusget-sars2-proteins-li><a href=/datasets/docs/v2/how-tos/virus/get-sars2-proteins/ title="Download a SARS-CoV-2 protein data package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tosvirusget-sars2-proteins><span>Download SARS-CoV-2 proteins</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2how-tosvalidation-li><a href=/datasets/docs/v2/how-tos/validation/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2how-tosvalidation><span>File validation</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv2tutorials-li><a href=/datasets/docs/v2/tutorials/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2tutorials><span>Tutorials</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2tutorialsortholog-get-one-isoform-li><a href=/datasets/docs/v2/tutorials/ortholog-get-one-isoform/ title="Get one protein per gene from a set of orthologs" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2tutorialsortholog-get-one-isoform><span>Get one protein from an ortholog set</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2tutorialsrename-files-li><a href=/datasets/docs/v2/tutorials/rename-files/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2tutorialsrename-files><span>Rename downloaded files</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2tutorialsdownload-ortholog-dataset-li><a href=/datasets/docs/v2/tutorials/download-ortholog-dataset/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2tutorialsdownload-ortholog-dataset><span>Retrieve ortholog data and metadata</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2tutorialsworking-with-jsonl-data-reports-li><a href=/datasets/docs/v2/tutorials/working-with-jsonl-data-reports/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2tutorialsworking-with-jsonl-data-reports><span>Working with JSON Lines data reports</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv2api-li><a href=/datasets/docs/v2/api/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2api><span>API</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2apirest-api-li><a href=/datasets/docs/v2/api/rest-api/ title="NCBI Datasets v2 REST API" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2apirest-api><span>REST API</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2apiapi-keys-li><a href=/datasets/docs/v2/api/api-keys/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2apiapi-keys><span>API keys</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2apilanguages-li><a href=/datasets/docs/v2/api/languages/ title="Supported programming languages" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2apilanguages><span>Programming Languages</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2apideprecated-apis-li><a href=/datasets/docs/v2/api/deprecated-apis/ title="Retired API Endpoints" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2apideprecated-apis><span>Retired Endpoints</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv2policies-annotation-li><a href=/datasets/docs/v2/policies-annotation/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2policies-annotation><span>NCBI Genome Data Processing</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2policies-annotationgenome-processing-li><a href=/datasets/docs/v2/policies-annotation/genome-processing/ title="NCBI Genome Data Processing" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2policies-annotationgenome-processing><span>Genome Data Processing</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationgenome-processingversion-status-li><a href=/datasets/docs/v2/policies-annotation/genome-processing/version-status/ title="Assembly Versioning and Status" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationgenome-processingversion-status><span>Assembly version and status</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationgenome-processingreference-selection-li><a href=/datasets/docs/v2/policies-annotation/genome-processing/reference-selection/ title="Selecting Reference Genomes" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationgenome-processingreference-selection><span>Reference Genomes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationgenome-processingrefseq-selection-li><a href=/datasets/docs/v2/policies-annotation/genome-processing/refseq-selection/ title="Genomes Selected for RefSeq Annotation" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationgenome-processingrefseq-selection><span>RefSeq Genomes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationgenome-processinggenome_notes-li><a href=/datasets/docs/v2/policies-annotation/genome-processing/genome_notes/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationgenome-processinggenome_notes><span>Genome Notes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationgenome-processingtype-material-li><a href=/datasets/docs/v2/policies-annotation/genome-processing/type-material/ title="What is Type Material?" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationgenome-processingtype-material><span>Type Material</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationpipelines-li><a href=/datasets/docs/v2/policies-annotation/pipelines/ title="NCBI RefSeq Genome Annotation Pipelines" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2policies-annotationpipelines><span>Genome Annotation Pipelines</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2policies-annotationquality-li><a href=/datasets/docs/v2/policies-annotation/quality/ title="NCBI Genome Quality Analysis" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2policies-annotationquality><span>Genome Quality Analysis</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2policies-annotationqualitycontamination-li><a href=/datasets/docs/v2/policies-annotation/quality/contamination/ title="NCBI Contamination Screening" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2policies-annotationqualitycontamination><span>Contamination Screening</span></a><ul class="ul-4 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationqualitycontaminationfcs-contamination-li><a href=/datasets/docs/v2/policies-annotation/quality/contamination/fcs-contamination/ title="Foreign Contamination Screen (FCS)" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationqualitycontaminationfcs-contamination><span>FCS</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationqualitycontaminationani-contamination-li><a href=/datasets/docs/v2/policies-annotation/quality/contamination/ani-contamination/ title="Average Nucleotide Identity (ANI)" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationqualitycontaminationani-contamination><span>ANI</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationqualityani-li><a href=/datasets/docs/v2/policies-annotation/quality/ani/ title="Average Nucleotide Identity (ANI)" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationqualityani><span>ANI Overview</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationqualitybusco-li><a href=/datasets/docs/v2/policies-annotation/quality/busco/ title="Benchmarking Universal Single-Copy Orthologs (BUSCO) Analysis" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationqualitybusco><span>BUSCO</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationqualitycheckm-li><a href=/datasets/docs/v2/policies-annotation/quality/checkm/ title="CheckM Analysis" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationqualitycheckm><span>CheckM</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationdata-model-li><a href=/datasets/docs/v2/policies-annotation/data-model/ title="The NCBI Genome Assembly Data Model" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationdata-model><span>Data model</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationgenomeftp-li><a href=/datasets/docs/v2/policies-annotation/genomeftp/ title="NCBI Genomes FTP" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationgenomeftp><span>Genomes FTP</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2policies-annotationortholog-calculation-li><a href=/datasets/docs/v2/policies-annotation/ortholog-calculation/ title="How Are Orthologs Calculated?" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2policies-annotationortholog-calculation><span>Ortholog Calculation</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child active-path" id=m-datasetsdocsv2troubleshooting-li><a href=/datasets/docs/v2/troubleshooting/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2troubleshooting><span>FAQs and troubleshooting</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child active-path" id=m-datasetsdocsv2troubleshootingfaq-li><a href=/datasets/docs/v2/troubleshooting/faq/ title=FAQs class="align-left ps-0 active td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2troubleshootingfaq><span class=td-sidebar-nav-active-item>Frequently asked Questions</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv2troubleshootingmac-zip-bug-li><a href=/datasets/docs/v2/troubleshooting/mac-zip-bug/ title="Mac zip archive bugs" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2troubleshootingmac-zip-bug><span>Mac zip bugs</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv2reference-docs-li><a href=/datasets/docs/v2/reference-docs/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docs><span>Reference</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-line-li><a href=/datasets/docs/v2/reference-docs/command-line/ title="Command line tool reference" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-line><span>Command line</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformat-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedataformat><span>dataformat</span></a><ul class="ul-4 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsv-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedataformattsv><span>tsv</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_genome-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_genome><span>genome</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_genome-seq-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_genome-seq/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_genome-seq><span>genome-seq</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_gene-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_gene><span>gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_gene-product-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_gene-product/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_gene-product><span>gene-product</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_virus-genome-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_virus-genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_virus-genome><span>virus-genome</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_virus-annotation-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_virus-annotation/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_virus-annotation><span>virus-annotation</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_microbigge-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_microbigge/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_microbigge><span>microbigge</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_prok-gene-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_prok-gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_prok-gene><span>prok-gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_prok-gene-location-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_prok-gene-location/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_prok-gene-location><span>prok-gene-location</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_genome-annotations-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_genome-annotations/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_genome-annotations><span>genome-annotations</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_taxonomy-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_taxonomy/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_taxonomy><span>taxonomy</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_organelle-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/tsv/dataformat_tsv_organelle/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformattsvdataformat_tsv_organelle><span>organelle</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexcel-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedataformatexcel><span>excel</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_genome-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_genome><span>genome</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_genome-seq-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_genome-seq/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_genome-seq><span>genome-seq</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_gene-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_gene><span>gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_gene-product-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_gene-product/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_gene-product><span>gene-product</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_virus-genome-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_virus-genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_virus-genome><span>virus-genome</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_virus-annotation-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_virus-annotation/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_virus-annotation><span>virus-annotation</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_microbigge-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_microbigge/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_microbigge><span>microbigge</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_prok-gene-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_prok-gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_prok-gene><span>prok-gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_prok-gene-location-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_prok-gene-location/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_prok-gene-location><span>prok-gene-location</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_genome-annotations-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_genome-annotations/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_genome-annotations><span>genome-annotations</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_taxonomy-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_taxonomy/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_taxonomy><span>taxonomy</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_organelle-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/excel/dataformat_excel_organelle/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatexceldataformat_excel_organelle><span>organelle</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatdataformat_catalog-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/dataformat_catalog/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatdataformat_catalog><span>catalog</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatcompletion-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/completion/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedataformatcompletion><span>completion</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatcompletiondataformat_completion_bash-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/completion/dataformat_completion_bash/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatcompletiondataformat_completion_bash><span>bash</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatcompletiondataformat_completion_zsh-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/completion/dataformat_completion_zsh/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatcompletiondataformat_completion_zsh><span>zsh</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatcompletiondataformat_completion_fish-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/completion/dataformat_completion_fish/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatcompletiondataformat_completion_fish><span>fish</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatcompletiondataformat_completion_powershell-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/completion/dataformat_completion_powershell/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatcompletiondataformat_completion_powershell><span>powershell</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedataformatdataformat_version-li><a href=/datasets/docs/v2/reference-docs/command-line/dataformat/dataformat_version/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedataformatdataformat_version><span>version</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasets-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasets><span>datasets</span></a><ul class="ul-4 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummary-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetssummary><span>summary</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygene-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygene><span>gene</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenedatasets_summary_gene_gene-id-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/gene/datasets_summary_gene_gene-id/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenedatasets_summary_gene_gene-id><span>gene-id</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenedatasets_summary_gene_symbol-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/gene/datasets_summary_gene_symbol/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenedatasets_summary_gene_symbol><span>symbol</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenedatasets_summary_gene_accession-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/gene/datasets_summary_gene_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenedatasets_summary_gene_accession><span>accession</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenedatasets_summary_gene_taxon-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/gene/datasets_summary_gene_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenedatasets_summary_gene_taxon><span>taxon</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenedatasets_summary_gene_locus-tag-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/gene/datasets_summary_gene_locus-tag/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenedatasets_summary_gene_locus-tag><span>locus-tag</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenome-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenome><span>genome</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenomedatasets_summary_genome_accession-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/genome/datasets_summary_genome_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenomedatasets_summary_genome_accession><span>accession</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenomedatasets_summary_genome_taxon-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/genome/datasets_summary_genome_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarygenomedatasets_summary_genome_taxon><span>taxon</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummaryvirus-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/virus/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetssummaryvirus><span>virus</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummaryvirusgenome-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/virus/genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetssummaryvirusgenome><span>genome</span></a><ul class="ul-7 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummaryvirusgenomedatasets_summary_virus_genome_taxon-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/virus/genome/datasets_summary_virus_genome_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetssummaryvirusgenomedatasets_summary_virus_genome_taxon><span>taxon</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummaryvirusgenomedatasets_summary_virus_genome_accession-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/virus/genome/datasets_summary_virus_genome_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetssummaryvirusgenomedatasets_summary_virus_genome_accession><span>accession</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarytaxonomy-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/taxonomy/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarytaxonomy><span>taxonomy</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarytaxonomydatasets_summary_taxonomy_taxon-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/summary/taxonomy/datasets_summary_taxonomy_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetssummarytaxonomydatasets_summary_taxonomy_taxon><span>taxon</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownload-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownload><span>download</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgene-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgene><span>gene</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_gene-id-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/gene/datasets_download_gene_gene-id/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_gene-id><span>gene-id</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_symbol-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/gene/datasets_download_gene_symbol/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_symbol><span>symbol</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_accession-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/gene/datasets_download_gene_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_accession><span>accession</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_taxon-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/gene/datasets_download_gene_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_taxon><span>taxon</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_locus-tag-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/gene/datasets_download_gene_locus-tag/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_locus-tag><span>locus-tag</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenome-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenome><span>genome</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenomedatasets_download_genome_accession-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/genome/datasets_download_genome_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenomedatasets_download_genome_accession><span>accession</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenomedatasets_download_genome_taxon-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/genome/datasets_download_genome_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadgenomedatasets_download_genome_taxon><span>taxon</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadtaxonomy-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/taxonomy/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadtaxonomy><span>taxonomy</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadtaxonomydatasets_download_taxonomy_taxon-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/taxonomy/datasets_download_taxonomy_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadtaxonomydatasets_download_taxonomy_taxon><span>taxon</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadvirus-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/virus/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadvirus><span>virus</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadvirusgenome-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/virus/genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadvirusgenome><span>genome</span></a><ul class="ul-7 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadvirusgenomedatasets_download_virus_genome_accession-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/virus/genome/datasets_download_virus_genome_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadvirusgenomedatasets_download_virus_genome_accession><span>accession</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadvirusgenomedatasets_download_virus_genome_taxon-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/virus/genome/datasets_download_virus_genome_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadvirusgenomedatasets_download_virus_genome_taxon><span>taxon</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadvirusdatasets_download_virus_protein-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/download/virus/datasets_download_virus_protein/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdownloadvirusdatasets_download_virus_protein><span>protein</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetsdatasets_rehydrate-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/datasets_rehydrate/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetsdatasets_rehydrate><span>rehydrate</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetscompletion-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/completion/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docscommand-linedatasetscompletion><span>completion</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetscompletiondatasets_completion_bash-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/completion/datasets_completion_bash/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetscompletiondatasets_completion_bash><span>bash</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetscompletiondatasets_completion_zsh-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/completion/datasets_completion_zsh/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetscompletiondatasets_completion_zsh><span>zsh</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetscompletiondatasets_completion_fish-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/completion/datasets_completion_fish/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetscompletiondatasets_completion_fish><span>fish</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docscommand-linedatasetscompletiondatasets_completion_powershell-li><a href=/datasets/docs/v2/reference-docs/command-line/datasets/completion/datasets_completion_powershell/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docscommand-linedatasetscompletiondatasets_completion_powershell><span>powershell</span></a></li></ul></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docsfile-formats-li><a href=/datasets/docs/v2/reference-docs/file-formats/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docsfile-formats><span>File formats</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docsfile-formatsannotation-files-li><a href=/datasets/docs/v2/reference-docs/file-formats/annotation-files/ title="Annotation file formats" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docsfile-formatsannotation-files><span>Annotation files</span></a><ul class="ul-4 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsfile-formatsannotation-filesabout-ncbi-gbff-li><a href=/datasets/docs/v2/reference-docs/file-formats/annotation-files/about-ncbi-gbff/ title="GBFF format" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsfile-formatsannotation-filesabout-ncbi-gbff><span>GBFF</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsfile-formatsannotation-filesabout-ncbi-gff3-li><a href=/datasets/docs/v2/reference-docs/file-formats/annotation-files/about-ncbi-gff3/ title="GFF3 format" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsfile-formatsannotation-filesabout-ncbi-gff3><span>GFF3</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docsfile-formatsmetadata-files-li><a href=/datasets/docs/v2/reference-docs/file-formats/metadata-files/ title="Metadata file formats" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docsfile-formatsmetadata-files><span>Metadata files</span></a><ul class="ul-4 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsfile-formatsmetadata-filesabout-json-and-tabular-li><a href=/datasets/docs/v2/reference-docs/file-formats/metadata-files/about-json-and-tabular/ title="Summary of JSON, JSON Lines, and CSV/TSV tabular formats" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsfile-formatsmetadata-filesabout-json-and-tabular><span>Summary of metadata file formats</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsfile-formatsmetadata-fileswhy-jsonl-li><a href=/datasets/docs/v2/reference-docs/file-formats/metadata-files/why-jsonl/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsfile-formatsmetadata-fileswhy-jsonl><span>Why JSON and JSON Lines</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsfile-formatsmetadata-filestools-for-jsonl-li><a href=/datasets/docs/v2/reference-docs/file-formats/metadata-files/tools-for-jsonl/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsfile-formatsmetadata-filestools-for-jsonl><span>Tools for JSON and JSON Lines</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsrelease-notes-li><a href=/datasets/docs/v2/reference-docs/release-notes/ title="NCBI Datasets release notes" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docsrelease-notes><span>Release notes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docsdata-reports-li><a href=/datasets/docs/v2/reference-docs/data-reports/ title="Data report schemas" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docsdata-reports><span>Report schemas</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportsgene-li><a href=/datasets/docs/v2/reference-docs/data-reports/gene/ title="Gene report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportsgene><span>Gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportsgene-product-li><a href=/datasets/docs/v2/reference-docs/data-reports/gene-product/ title="Gene product report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportsgene-product><span>Gene product</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportsgenome-assembly-li><a href=/datasets/docs/v2/reference-docs/data-reports/genome-assembly/ title="Genome assembly report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportsgenome-assembly><span>Genome assembly</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportsgenome-sequence-li><a href=/datasets/docs/v2/reference-docs/data-reports/genome-sequence/ title="Genome sequence report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportsgenome-sequence><span>Genome sequence</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportsmicrobigge-li><a href=/datasets/docs/v2/reference-docs/data-reports/microbigge/ title="MicroBIGG-E report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportsmicrobigge><span>MicroBIGG-E</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportsprokaryote-gene-li><a href=/datasets/docs/v2/reference-docs/data-reports/prokaryote-gene/ title="Prokaryote gene report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportsprokaryote-gene><span>Prok. gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportsprokaryote-gene-location-li><a href=/datasets/docs/v2/reference-docs/data-reports/prokaryote-gene-location/ title="Prokaryote gene location report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportsprokaryote-gene-location><span>Prok. gene location</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportstaxonomy-li><a href=/datasets/docs/v2/reference-docs/data-reports/taxonomy/ title="Taxonomy report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportstaxonomy><span>Taxonomy</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportstaxonomy-names-li><a href=/datasets/docs/v2/reference-docs/data-reports/taxonomy-names/ title="Taxonomy names report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportstaxonomy-names><span>Taxonomy names</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportsvirus-li><a href=/datasets/docs/v2/reference-docs/data-reports/virus/ title="Virus report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportsvirus><span>Virus</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-reportsvirus-annotation-li><a href=/datasets/docs/v2/reference-docs/data-reports/virus-annotation/ title="Virus annotation report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-reportsvirus-annotation><span>Virus annotation</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv2reference-docsdata-packages-li><a href=/datasets/docs/v2/reference-docs/data-packages/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv2reference-docsdata-packages><span>Data packages</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-packagesgene-package-li><a href=/datasets/docs/v2/reference-docs/data-packages/gene-package/ title="NCBI Datasets Gene Package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-packagesgene-package><span>Gene package</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-packagesgenome-li><a href=/datasets/docs/v2/reference-docs/data-packages/genome/ title="NCBI Datasets Genome Package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-packagesgenome><span>Genome package</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-packagestaxonomy-li><a href=/datasets/docs/v2/reference-docs/data-packages/taxonomy/ title="NCBI Datasets Taxonomy Package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-packagestaxonomy><span>Taxonomy package</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv2reference-docsdata-packagesvirus-genome-li><a href=/datasets/docs/v2/reference-docs/data-packages/virus-genome/ title="NCBI Datasets Virus Data Package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2reference-docsdata-packagesvirus-genome><span>Virus data package</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv2glossary-li><a href=/datasets/docs/v2/glossary/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2glossary><span>Glossary</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv2citing-datasets-li><a href=/datasets/docs/v2/citing-datasets/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv2citing-datasets><span>Cite Us</span></a></li></ul></li></ul></nav><script src=/datasets/docs/v2/js/sidebar-tree.js></script><div id=doc-version-selector-container><div>Documentation version</div><select><option value=v1>CLI v13.x (API v1)</option><option value=v2>CLI v16+ (API v2)</option></select>
|
||
<a href=/datasets/docs/v2/troubleshooting/faq/#which-version-of-the-documentation-should-i-use>Learn more</a></div></div></div><div class="d-none d-xl-block col-xl-2 td-sidebar-toc d-print-none"><div class=td-toc><nav id=TableOfContents><ul><li><ul><li><ul><li><a href=#how-do-i-download-sra-data>How do I download SRA data?</a></li><li><a href=#where-is-the-data-i-requested>Where is the data I requested?</a></li><li><a href=#i-still-cant-find-my-data-can-you-help>I still can’t find my data, can you help?</a></li><li><a href=#what-file-formats-can-be-downloaded-using-ncbi-datasets>What file formats can be downloaded using NCBI Datasets?</a></li><li><a href=#what-is-a-data-package>What is a data package?</a></li><li><a href=#what-is-a-dehydrated-data-package-and-what-is-rehydration>What is a dehydrated data package and what is rehydration?</a></li><li><a href=#what-input-date-formats-are-supported-by-the-command-line-tools>What input date formats are supported by the command-line tools?</a></li><li><a href=#why-do-gene-counts-differ-when-comparing-taxonomy-and-species-pages-to-the-gene-table>Why do gene counts differ when comparing taxonomy and species pages to the gene table?</a></li><li><a href=#what-are-atypical-genomes>What are atypical genomes?</a></li><li><a href=#how-does-ncbi-decide-which-genomes-to-annotate>How does NCBI decide which genomes to annotate?</a></li><li><a href=#how-do-i-download-plasmid-sequences>How do I download plasmid sequences?</a></li><li><a href=#what-is-the-difference-between-a-genbank-gca-and-refseq-gcf-genome-assembly>What is the difference between a GenBank (GCA) and RefSeq (GCF) genome assembly?</a></li><li><a href=#what-is-changing-with-the-ncbi-datasets-api-rate-limits-in-january-2025-and-how-will-it-affect-programmatic-access-including-the-command-line-tool>What is changing with the NCBI Datasets API rate limits in January 2025, and how will it affect programmatic access, including the command-line tool?</a></li><li><a href=#can-i-make-more-than-5-requests-per-second>Can I make more than 5 requests per second?</a></li><li><a href=#if-i-already-have-an-ncbi-api-key-do-i-need-to-request-a-new-one-to-work-with-ncbi-datasets>If I already have an NCBI API key, do I need to request a new one to work with NCBI Datasets?</a></li></ul></li><li><a href=#how-do-api-keys-benefit-both-users-and-ncbi>How do API keys benefit both users and NCBI?</a><ul><li><a href=#related-information>Related information</a></li></ul></li></ul></li></ul></nav></div></div><main class="col-12 col-md-9 col-xl-8 pl-md-5" role=main><div id=possible-banner></div><nav aria-label=breadcrumb class=d-print-none><ol class="breadcrumb spb-1"><li class=breadcrumb-item><a href=/datasets/docs/v2/>Documentation</a></li><li class=breadcrumb-item><a href=/datasets/docs/v2/troubleshooting/>FAQs and troubleshooting</a></li><li class="breadcrumb-item active" aria-current=page><a href=/datasets/docs/v2/troubleshooting/faq/>Frequently asked Questions</a></li></ol></nav><h1 class="mb-4 font-weight-bold">FAQs</h1><p class="lead pb-2">Questions and answers for common NCBI Datasets questions</p><div class="d-xl-none td-toc td-toc--inline d-print-none"><a id=td-content__toc-link href=#td-content__toc data-toggle=collapse aria-controls=td-docs-toc aria-expanded=false aria-label="Toggle toc navigation"><span class=lead>Contents<i class="fas fa-chevron-right ml-2"></i></span></a><div id=td-content__toc class=collapse><nav id=TableOfContents><ul><li><ul><li><ul><li><a href=#how-do-i-download-sra-data>How do I download SRA data?</a></li><li><a href=#where-is-the-data-i-requested>Where is the data I requested?</a></li><li><a href=#i-still-cant-find-my-data-can-you-help>I still can’t find my data, can you help?</a></li><li><a href=#what-file-formats-can-be-downloaded-using-ncbi-datasets>What file formats can be downloaded using NCBI Datasets?</a></li><li><a href=#what-is-a-data-package>What is a data package?</a></li><li><a href=#what-is-a-dehydrated-data-package-and-what-is-rehydration>What is a dehydrated data package and what is rehydration?</a></li><li><a href=#what-input-date-formats-are-supported-by-the-command-line-tools>What input date formats are supported by the command-line tools?</a></li><li><a href=#why-do-gene-counts-differ-when-comparing-taxonomy-and-species-pages-to-the-gene-table>Why do gene counts differ when comparing taxonomy and species pages to the gene table?</a></li><li><a href=#what-are-atypical-genomes>What are atypical genomes?</a></li><li><a href=#how-does-ncbi-decide-which-genomes-to-annotate>How does NCBI decide which genomes to annotate?</a></li><li><a href=#how-do-i-download-plasmid-sequences>How do I download plasmid sequences?</a></li><li><a href=#what-is-the-difference-between-a-genbank-gca-and-refseq-gcf-genome-assembly>What is the difference between a GenBank (GCA) and RefSeq (GCF) genome assembly?</a></li><li><a href=#what-is-changing-with-the-ncbi-datasets-api-rate-limits-in-january-2025-and-how-will-it-affect-programmatic-access-including-the-command-line-tool>What is changing with the NCBI Datasets API rate limits in January 2025, and how will it affect programmatic access, including the command-line tool?</a></li><li><a href=#can-i-make-more-than-5-requests-per-second>Can I make more than 5 requests per second?</a></li><li><a href=#if-i-already-have-an-ncbi-api-key-do-i-need-to-request-a-new-one-to-work-with-ncbi-datasets>If I already have an NCBI API key, do I need to request a new one to work with NCBI Datasets?</a></li></ul></li><li><a href=#how-do-api-keys-benefit-both-users-and-ncbi>How do API keys benefit both users and NCBI?</a><ul><li><a href=#related-information>Related information</a></li></ul></li></ul></li></ul></nav></div><button id=td-content__toc-link-expanded href=#td-content__toc class="btn btn-small ml-1 my-2 py-0 px-3" data-toggle=collapse aria-controls=td-docs-toc aria-expanded=true aria-label="Toggle toc navigation"></button></div><style>.td-content table{border:1px solid #ccc}@media screen and (min-width:600px){.td-content table{display:table}}@media screen and (max-width:400px){.td-content table td{white-space:nowrap!important}}.td-content table th{white-space:nowrap}summary>h3{display:inline-block}</style><div class=td-content><h1>FAQs</h1><div class=lead>Questions and answers for common NCBI Datasets questions</div><header class=article-meta></header><p>For information about the deprecation and retirement of the NCBI Datasets command-line tools v13.x and older, and API v1, see the CLI v13.x (API v1) <a href=https://www.ncbi.nlm.nih.gov/datasets/docs/v1/troubleshooting/faq/ target=_blank>FAQs.</a></p><h4 id=how-do-i-download-sra-data>How do I download SRA data?</h4><p>Unfortunately, retrieval of SRA data, including retrieval of SRA data by BioProject accession, is not supported by NCBI Datasets.
|
||
To download SRA data for a given BioProject, we recommend using the SRA Toolkit. For example, to obtain SRA data in FASTQ format for the BioProject accession <code>PRJNA648656</code>, try the following:</p><ol><li><a href=https://github.com/ncbi/sra-tools/wiki/01.-Downloading-SRA-Toolkit target=_blank>Download and install</a>
|
||
the SRA Toolkit.</li><li>Run <code>prefetch PRJNA648656</code> to download SRA data in .sra format</li><li>Run <code>fasterq-dump PRJNA648656</code> to extract FASTQ files from the downloaded .sra files.</li></ol><p>For more information, see the SRA Tools Wiki pages, <a href=https://github.com/ncbi/sra-tools/wiki/01.-Downloading-SRA-Toolkit target=_blank>Downloading SRA Toolkit</a>
|
||
and <a href=https://github.com/ncbi/sra-tools/wiki/08.-prefetch-and-fasterq-dump target=_blank>How to use prefetch and fastwerq-dump to extract FASTQ-files</a></p><h4 id=where-is-the-data-i-requested>Where is the data I requested?</h4><p>Your data is in the subdirectory <code>ncbi_dataset/data/</code> within the zip archive you downloaded.</p><h4 id=i-still-cant-find-my-data-can-you-help>I still can’t find my data, can you help?</h4><p>We have identified a bug affecting Mac Safari users. When downloading data from the NCBI Datasets web interface, you may see only a README file after the download has completed (while other files appear to be missing). As a workaround to prevent this issue from recurring, we recommend disabling automatic zip archive extraction in Safari until Apple releases a bug fix.
|
||
For more information, visit: <a href=/datasets/docs/v2/troubleshooting/mac-zip-bug/>Mac Safari zip archive bug</a></p><h4 id=what-file-formats-can-be-downloaded-using-ncbi-datasets>What file formats can be downloaded using NCBI Datasets?</h4><p>Datasets offers the following file formats (if available for the requested query):</p><ul><li>Sequence files in FASTA format: genomic/gene, transcript and protein nucleotide sequences</li><li>Annotation files: GTF, <a href=/datasets/docs/v2/reference-docs/file-formats/>GFF3, and GBFF</a></li><li>Metadata files: <a href=https://www.json.org/json-en.html target=_blank>JSON</a>
|
||
and <a href=https://jsonlines.org/ target=_blank>JSON Lines</a></li></ul><h4 id=what-is-a-data-package>What is a data package?</h4><p>A “data package” is an NCBI Datasets zip archive that contains sequence, annotation, metadata and other biological data. For more information, see <a href=/datasets/docs/v2/reference-docs/data-packages/>Data packages.</a></p><h4 id=what-is-a-dehydrated-data-package-and-what-is-rehydration>What is a dehydrated data package and what is rehydration?</h4>A dehydrated data package is a zip archive that contains only metadata and the location of sequence and other data files on NCBI servers.<br>Rehydration is the process of downloading the data itself.<br>Downloading a dehydrated data package and rehydrating it is the best way to download large genome data packages containing either > 1,000 genomes or > 15 GB of data.
|
||
For more information, see our How-to guide on how to <a href=/datasets/docs/v2/how-tos/genomes/large-download/>download large genome data packages</a>.<h4 id=what-input-date-formats-are-supported-by-the-command-line-tools>What input date formats are supported by the command-line tools?</h4><p>The NCBI Datasets CLI supports many input date formats by using <a href=https://github.com/araddon/dateparse target=_blank>datepase.ParseAny</a>
|
||
to parse input date strings. However, we recommend using ISO 8601 standard <code>YYYY-MM-DD</code> to avoid any doubt that the date you provide is misinterpreted.</p><h4 id=why-do-gene-counts-differ-when-comparing-taxonomy-and-species-pages-to-the-gene-table>Why do gene counts differ when comparing taxonomy and species pages to the gene table?</h4><p>Gene counts on the taxonomy and species pages are derived from the annotation report. The annotation report and other genome annotation files represent a snapshot of the genome at the time of genome annotation. In contrast, the gene table and gene data obtained from the <em>datasets</em> (<code>datasets download gene...</code>) contains current gene data, including unannotated genes, genes created after the last annotation, as well as any updates made to existing genes after the last annotation. For some model organisms, particularly human, frequent manual curation means that current gene data is likely to differ compared to the most recent annotation.</p><h4 id=what-are-atypical-genomes>What are atypical genomes?</h4><p><img src=/datasets/docs/v2/images/genome_warning.png alt="Genome warning message"></p><p>Atypical genomes are genomes with one or more problems that have been identified by NCBI relating to quality, unusual size, or other flaws in the genome assembly. See <a href=/datasets/docs/v2/policies-annotation/genome-processing/genome_notes/#atypical-assemblies>atypical assemblies</a> for the list of problems that result in an affected genome being designated as atypical.</p><p>On individual <a href=https://www.ncbi.nlm.nih.gov/data-hub/genome/GCA_000002115.2/>genome pages</a>, atypical genomes can be identified by the presence of a warning icon, consisting of a yellow triangle containing an exclamation point, and the type of genome problem at the top of the page (see image above).</p><p>On genome <a href="https://www.ncbi.nlm.nih.gov/data-hub/genome/?taxon=9606">table pages</a>, atypical genomes with one or more problems are identified with a warning icon, consisting of a yellow triangle containing an exclamation point, next to the genome assembly name. The type of genome problem(s) is shown when you hover on the warning icon. Atypical genomes can be excluded from the genome table display by selecting the “Exclude atypical genomes” checkbox in the Filters section of the page.</p><p>The assembly <a href=/datasets/docs/v2/reference-docs/data-reports/genome-assembly/#ncbi-datasets-v2-reports-AssemblyInfo>data report</a> includes two fields that indicate whether a genome is atypical and the specific type of genome problem. When a genome problem has been identified, <code>atypical.is_atypical</code> is true, and <code>atypical.warnings</code> will include the type of genome problem(s).</p><h4 id=how-does-ncbi-decide-which-genomes-to-annotate>How does NCBI decide which genomes to annotate?</h4><p>Only genomes with assemblies that are publicly available in <a href=https://www.insdc.org/ target=_blank>INSDC</a>
|
||
(DDBJ, ENA or <a href=https://www.ncbi.nlm.nih.gov/genbank/ target=_blank>GenBank</a>
|
||
) are considered for inclusion in RefSeq and processing by the eukaryotic genome annotation pipeline. NCBI makes this selection based on several factors. For more information, see <a href=/datasets/docs/v2/policies-annotation/genome-processing/refseq-selection/>Genomes Selected for RefSeq Annotation.</a></p><h4 id=how-do-i-download-plasmid-sequences>How do I download plasmid sequences?</h4><p>NCBI Datasets currently only provides access to plasmids that are part of a genome assembly. The comprehensive set of RefSeq plasmid sequences, including plasmids that are not part of a genome assembly, are available from the genomes FTP site at this path: <a href=https://ftp.ncbi.nlm.nih.gov/genomes/refseq/plasmid/>https://ftp.ncbi.nlm.nih.gov/genomes/refseq/plasmid/</a></p><h4 id=what-is-the-difference-between-a-genbank-gca-and-refseq-gcf-genome-assembly>What is the difference between a GenBank (GCA) and RefSeq (GCF) genome assembly?</h4><p>A GenBank (GCA) genome assembly contains assembled genome sequences submitted by investigators or sequencing centers to GenBank or another member of the International Nucleotide Sequence Database Collaboration (INSDC). The GenBank (GCA) assembly is an archival record that is owned by the submitter and may or may not include annotation.
|
||
A RefSeq (GCF) genome assembly represents an NCBI-derived copy of a submitted GenBank (GCA) assembly. RefSeq (GCF) assembly records are maintained by NCBI. In some cases the RefSeq (GCF) assembly may not be completely identical to the GenBank (GCA) assembly due to assembly improvements made by NCBI staff. All RefSeq (GCF) genome assemblies include annotation.</p><p><img src=/datasets/docs/v2/images/gcf_vs_gca_v9.png alt="GCA vs GCF table"></p><h4 id=what-is-changing-with-the-ncbi-datasets-api-rate-limits-in-january-2025-and-how-will-it-affect-programmatic-access-including-the-command-line-tool>What is changing with the NCBI Datasets API rate limits in January 2025, and how will it affect programmatic access, including the command-line tool?</h4><p>Starting in January 2025, NCBI Datasets will implement a new rate limit for all programmatic access, including the NCBI Datasets command-line tools. There is no action needed from users that are accessing NCBI Datasets through the web. The rate limit will be set at 5 requests per second (rps) by default. This change is being made to ensure that all users, including those utilizing the command-line tool, can access the service smoothly and without interruptions.</p><h4 id=can-i-make-more-than-5-requests-per-second>Can I make more than 5 requests per second?</h4>Yes, you can exceed the default rate limit of 5 requests per second (rps) using an <a href=/datasets/docs/v2/api/api-keys/>NCBI API key</a>. With an API key, you can make requests at a rate of 10 rps.<h4 id=if-i-already-have-an-ncbi-api-key-do-i-need-to-request-a-new-one-to-work-with-ncbi-datasets>If I already have an NCBI API key, do I need to request a new one to work with NCBI Datasets?</h4><p>No, if you already have an NCBI API key, you can continue using the same API key with NCBI Datasets.</p><h3 id=how-do-api-keys-benefit-both-users-and-ncbi>How do API keys benefit both users and NCBI?</h3><p>API keys allow users to increase their request rate limit and serve as a valuable communication tool between users and NCBI. They enable NCBI to monitor and troubleshoot problems more effectively, ensuring a smoother experience for users. In case of issues or questions, having an API key associated with your requests can aid in quicker issue resolution and better user support. It also helps NCBI maintain the quality and reliability of its services.</p><h4 id=related-information>Related information</h4><ul><li><a href=/datasets/docs/v2/policies-annotation/genomeftp/#faqs>Genomes FTP FAQs</a></li></ul>Generated February 26, 2025</div><div class=c-global-meta-links><div class="td-page-meta ml-2 pb-1 pt-2 mb-0"></div></div></main></div></div></div><footer><section class=icon-section><div id=icon-section-header class=icon-section_header>Follow NCBI</div><div class="grid-container container"><div class=icon-section_container><a class=footer-icon id=footer_twitter href=https://twitter.com/ncbi aria-label=Twitter><svg width="40" height="40" viewBox="0 0 40 37" fill="none" xmlns="http://www.w3.org/2000/svg"><title>Twitter</title><g id="twitterx1008"><path id="path1008" d="M6.06736 7 16.8778 20.8991 6.00001 32.2H10.2l8.4-9.1 7.068 9.1H34L22.8 17.5 31.9 7H28.4l-7.7 8.4L14.401 7H6.06898 6.06736zM9.66753 8.73423H12.9327l16.8 21.73157h-3.163L9.66753 8.73423z" 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