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td-sidebar-link__section tree-root" id=m-datasetsdocsv1><span>Documentation</span></a><ul class=ul-1><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv1getting_started-li><a href=/datasets/docs/v1/getting_started/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv1getting_started><span>Getting started</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv1download-and-install-li><a href=/datasets/docs/v1/download-and-install/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv1download-and-install><span>Download and install</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv1how-tos-li><a href=/datasets/docs/v1/how-tos/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__section" id=m-datasetsdocsv1how-tos><span>How-to guides</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1how-tosgenes-li><a href=/datasets/docs/v1/how-tos/genes/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__section" id=m-datasetsdocsv1how-tosgenes><span>Genes</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1how-tosgenesget-gene-metadata-li><a href=/datasets/docs/v1/how-tos/genes/get-gene-metadata/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv1how-tosgenesget-gene-metadata><span>Get gene metadata</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1how-tosgenesdownload-gene-data-package-li><a href=/datasets/docs/v1/how-tos/genes/download-gene-data-package/ title="Download a gene data package" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv1how-tosgenesdownload-gene-data-package><span>Download genes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1how-tosgenesdownload-ortholog-dataset-li><a href=/datasets/docs/v1/how-tos/genes/download-ortholog-dataset/ title="Download a gene ortholog data package" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv1how-tosgenesdownload-ortholog-dataset><span>Download gene orthologs</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1how-tosgenesortholog-get-one-isoform-li><a href=/datasets/docs/v1/how-tos/genes/ortholog-get-one-isoform/ title="Get representative protein sequences from Ortholog sets" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv1how-tosgenesortholog-get-one-isoform><span>Get the longest isoform</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1how-tosgenomes-li><a href=/datasets/docs/v1/how-tos/genomes/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__section" id=m-datasetsdocsv1how-tosgenomes><span>Genomes</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1how-tosgenomesget-genome-metadata-li><a href=/datasets/docs/v1/how-tos/genomes/get-genome-metadata/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv1how-tosgenomesget-genome-metadata><span>Get genome metadata</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1how-tosgenomesdownload-genome-li><a href=/datasets/docs/v1/how-tos/genomes/download-genome/ title="Download a genome data package" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv1how-tosgenomesdownload-genome><span>Download genome data</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1how-tosgenomeslarge-download-li><a href=/datasets/docs/v1/how-tos/genomes/large-download/ title="Download large genome data packages" class="align-left ps-0 td-sidebar-link
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td-sidebar-link__page" id=m-datasetsdocsv1how-tosgenomeslarge-download><span>Large genome downloads</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1how-tosvirus-li><a href=/datasets/docs/v1/how-tos/virus/ class="align-left ps-0 td-sidebar-link
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td-sidebar-link__section" id=m-datasetsdocsv1how-tosvirus><span>Virus</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1how-tosvirusget-sars2-genomes-li><a href=/datasets/docs/v1/how-tos/virus/get-sars2-genomes/ title="Download SARS-CoV-2 genomes" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1how-tosvirusget-sars2-genomes><span>SARS-CoV-2 genomes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1how-tosvirusget-sars2-proteins-li><a href=/datasets/docs/v1/how-tos/virus/get-sars2-proteins/ title="Download SARS-CoV-2 protein sequences" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1how-tosvirusget-sars2-proteins><span>SARS-CoV-2 proteins</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1how-tosdata-reports-li><a href=/datasets/docs/v1/how-tos/data-reports/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1how-tosdata-reports><span>Working with JSON</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1how-tosdata-reportsworking-with-jsonl-data-reports-li><a href=/datasets/docs/v1/how-tos/data-reports/working-with-jsonl-data-reports/ title="Working with JSON Lines data reports" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1how-tosdata-reportsworking-with-jsonl-data-reports><span>Working with data reports</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv1languages-li><a href=/datasets/docs/v1/languages/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languages><span>Supported programming languages</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1languagespython-li><a href=/datasets/docs/v1/languages/python/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languagespython><span>Python</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1languagespythonapi-li><a href=/datasets/docs/v1/languages/python/api/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languagespythonapi><span>Python API</span></a><ul class="ul-4 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasets-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/ title="Package: ncbi.datasets" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languagespythonapincbidatasets><span>ncbi.datasets</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsmetadata-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/metadata/ title="Package: ncbi.datasets.metadata" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languagespythonapincbidatasetsmetadata><span>metadata</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsmetadatagene-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/metadata/gene/ title="Module: ncbi.datasets.metadata.gene" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsmetadatagene><span>gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsmetadatagenome-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/metadata/genome/ title="Module: ncbi.datasets.metadata.genome" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsmetadatagenome><span>genome</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapi-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/ title="Package: ncbi.datasets.openapi" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapi><span>openapi</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapi-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/api/ title="Package: ncbi.datasets.openapi.api" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapi><span>api</span></a><ul class="ul-7 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapigene_api-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/api/gene_api/ title="Module: ncbi.datasets.openapi.api.gene_api" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapigene_api><span>gene_api</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapigenome_api-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/api/genome_api/ title="Module: ncbi.datasets.openapi.api.genome_api" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapigenome_api><span>genome_api</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapiprokaryote_api-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/api/prokaryote_api/ title="Module: ncbi.datasets.openapi.api.prokaryote_api" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapiprokaryote_api><span>prokaryote_api</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapitaxonomy_api-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/api/taxonomy_api/ title="Module: ncbi.datasets.openapi.api.taxonomy_api" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapitaxonomy_api><span>taxonomy_api</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapiversion_api-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/api/version_api/ title="Module: ncbi.datasets.openapi.api.version_api" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapiversion_api><span>version_api</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapivirus_api-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/api/virus_api/ title="Module: ncbi.datasets.openapi.api.virus_api" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapivirus_api><span>virus_api</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapi_client-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/api_client/ title="Module: ncbi.datasets.openapi.api_client" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapi_client><span>api_client</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapis-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/apis/ title="Module: ncbi.datasets.openapi.apis" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiapis><span>apis</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiconfiguration-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/configuration/ title="Module: ncbi.datasets.openapi.configuration" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiconfiguration><span>configuration</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiexceptions-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/exceptions/ title="Module: ncbi.datasets.openapi.exceptions" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapiexceptions><span>exceptions</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodel_utils-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model_utils/ title="Module: ncbi.datasets.openapi.model_utils" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodel_utils><span>model_utils</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodel-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/ title="Module: OpenAPI Models" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodel><span>models</span></a><ul class="ul-7 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelprotobuf_any-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/protobuf_any/ title="Module: ncbi.datasets.openapi.model.protobuf_any" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelprotobuf_any><span>protobuf_any</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelrpc_status-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/rpc_status/ title="Module: ncbi.datasets.openapi.model.rpc_status" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelrpc_status><span>rpc_status</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_accessions-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_accessions/ title="Module: ncbi.datasets.openapi.model.v1_accessions" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_accessions><span>v1_accessions</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotated_assemblies-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_annotated_assemblies/ title="Module: ncbi.datasets.openapi.model.v1_annotated_assemblies" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotated_assemblies><span>v1_annotated_assemblies</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotation-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_annotation/ title="Module: ncbi.datasets.openapi.model.v1_annotation" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotation><span>v1_annotation</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotation_for_assembly-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_annotation_for_assembly/ title="Module: ncbi.datasets.openapi.model.v1_annotation_for_assembly" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotation_for_assembly><span>v1_annotation_for_assembly</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotation_for_assembly_file-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_annotation_for_assembly_file/ title="Module: ncbi.datasets.openapi.model.v1_annotation_for_assembly_file" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotation_for_assembly_file><span>v1_annotation_for_assembly_file</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotation_for_assembly_type-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_annotation_for_assembly_type/ title="Module: ncbi.datasets.openapi.model.v1_annotation_for_assembly_type" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotation_for_assembly_type><span>v1_annotation_for_assembly_type</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotation_for_virus_type-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_annotation_for_virus_type/ title="Module: ncbi.datasets.openapi.model.v1_annotation_for_virus_type" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_annotation_for_virus_type><span>v1_annotation_for_virus_type</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_availability-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_dataset_availability/ title="Module: ncbi.datasets.openapi.model.v1_assembly_dataset_availability" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_availability><span>v1_assembly_dataset_availability</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptor-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_dataset_descriptor/ title="Module: ncbi.datasets.openapi.model.v1_assembly_dataset_descriptor" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptor><span>v1_assembly_dataset_descriptor</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptor_chromosome-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_dataset_descriptor_chromosome/ title="Module: ncbi.datasets.openapi.model.v1_assembly_dataset_descriptor_chromosome" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptor_chromosome><span>v1_assembly_dataset_descriptor_chromosome</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptors_filter-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_dataset_descriptors_filter/ title="Module: ncbi.datasets.openapi.model.v1_assembly_dataset_descriptors_filter" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptors_filter><span>v1_assembly_dataset_descriptors_filter</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptors_filter_assembly_level-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_dataset_descriptors_filter_assembly_level/ title="Module: ncbi.datasets.openapi.model.v1_assembly_dataset_descriptors_filter_assembly_level" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptors_filter_assembly_level><span>v1_assembly_dataset_descriptors_filter_assembly_level</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptors_filter_assembly_source-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_dataset_descriptors_filter_assembly_source/ title="Module: ncbi.datasets.openapi.model.v1_assembly_dataset_descriptors_filter_assembly_source" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptors_filter_assembly_source><span>v1_assembly_dataset_descriptors_filter_assembly_source</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptors_filter_assembly_version-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_dataset_descriptors_filter_assembly_version/ title="Module: ncbi.datasets.openapi.model.v1_assembly_dataset_descriptors_filter_assembly_version" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptors_filter_assembly_version><span>v1_assembly_dataset_descriptors_filter_assembly_version</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptors_request_content_type-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_dataset_descriptors_request_content_type/ title="Module: ncbi.datasets.openapi.model.v1_assembly_dataset_descriptors_request_content_type" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_descriptors_request_content_type><span>v1_assembly_dataset_descriptors_request_content_type</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_request-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_dataset_request/ title="Module: ncbi.datasets.openapi.model.v1_assembly_dataset_request" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_request><span>v1_assembly_dataset_request</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_request_resolution-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_dataset_request_resolution/ title="Module: ncbi.datasets.openapi.model.v1_assembly_dataset_request_resolution" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_dataset_request_resolution><span>v1_assembly_dataset_request_resolution</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_match-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_match/ title="Module: ncbi.datasets.openapi.model.v1_assembly_match" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_match><span>v1_assembly_match</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_metadata-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_metadata/ title="Module: ncbi.datasets.openapi.model.v1_assembly_metadata" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_metadata><span>v1_assembly_metadata</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_metadata_request-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_metadata_request/ title="Module: ncbi.datasets.openapi.model.v1_assembly_metadata_request" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_metadata_request><span>v1_assembly_metadata_request</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_metadata_request_bioprojects-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_metadata_request_bioprojects/ title="Module: ncbi.datasets.openapi.model.v1_assembly_metadata_request_bioprojects" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_metadata_request_bioprojects><span>v1_assembly_metadata_request_bioprojects</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_metadata_request_content_type-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_assembly_metadata_request_content_type/ title="Module: ncbi.datasets.openapi.model.v1_assembly_metadata_request_content_type" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_assembly_metadata_request_content_type><span>v1_assembly_metadata_request_content_type</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_bio_project-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_bio_project/ title="Module: ncbi.datasets.openapi.model.v1_bio_project" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_bio_project><span>v1_bio_project</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_bio_project_lineage-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_bio_project_lineage/ title="Module: ncbi.datasets.openapi.model.v1_bio_project_lineage" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_bio_project_lineage><span>v1_bio_project_lineage</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_busco_stat-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_busco_stat/ title="Module: ncbi.datasets.openapi.model.v1_busco_stat" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_busco_stat><span>v1_busco_stat</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_count_type-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_count_type/ title="Module: ncbi.datasets.openapi.model.v1_count_type" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_count_type><span>v1_count_type</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_dataset_request-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_dataset_request/ title="Module: ncbi.datasets.openapi.model.v1_dataset_request" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_dataset_request><span>v1_dataset_request</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_download_summary-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_download_summary/ title="Module: ncbi.datasets.openapi.model.v1_download_summary" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_download_summary><span>v1_download_summary</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_download_summary_available_files-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_download_summary_available_files/ title="Module: ncbi.datasets.openapi.model.v1_download_summary_available_files" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_download_summary_available_files><span>v1_download_summary_available_files</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_download_summary_dehydrated-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_download_summary_dehydrated/ title="Module: ncbi.datasets.openapi.model.v1_download_summary_dehydrated" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_download_summary_dehydrated><span>v1_download_summary_dehydrated</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_download_summary_file_summary-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_download_summary_file_summary/ title="Module: ncbi.datasets.openapi.model.v1_download_summary_file_summary" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_download_summary_file_summary><span>v1_download_summary_file_summary</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_download_summary_hydrated-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_download_summary_hydrated/ title="Module: ncbi.datasets.openapi.model.v1_download_summary_hydrated" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_download_summary_hydrated><span>v1_download_summary_hydrated</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_element_flank_config-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_element_flank_config/ title="Module: ncbi.datasets.openapi.model.v1_element_flank_config" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_element_flank_config><span>v1_element_flank_config</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_error-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_error/ title="Module: ncbi.datasets.openapi.model.v1_error" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_error><span>v1_error</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_error_assembly_error_code-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_error_assembly_error_code/ title="Module: ncbi.datasets.openapi.model.v1_error_assembly_error_code" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_error_assembly_error_code><span>v1_error_assembly_error_code</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_error_gene_error_code-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_error_gene_error_code/ title="Module: ncbi.datasets.openapi.model.v1_error_gene_error_code" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_error_gene_error_code><span>v1_error_gene_error_code</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_error_virus_error_code-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_error_virus_error_code/ title="Module: ncbi.datasets.openapi.model.v1_error_virus_error_code" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_error_virus_error_code><span>v1_error_virus_error_code</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_fasta-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_fasta/ title="Module: ncbi.datasets.openapi.model.v1_fasta" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_fasta><span>v1_fasta</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_feature_counts-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_feature_counts/ title="Module: ncbi.datasets.openapi.model.v1_feature_counts" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_feature_counts><span>v1_feature_counts</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_counts-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_gene_counts/ title="Module: ncbi.datasets.openapi.model.v1_gene_counts" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_counts><span>v1_gene_counts</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_dataset_request-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_gene_dataset_request/ title="Module: ncbi.datasets.openapi.model.v1_gene_dataset_request" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_dataset_request><span>v1_gene_dataset_request</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_dataset_request_content_type-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_gene_dataset_request_content_type/ title="Module: ncbi.datasets.openapi.model.v1_gene_dataset_request_content_type" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_dataset_request_content_type><span>v1_gene_dataset_request_content_type</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_dataset_request_sort-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_gene_dataset_request_sort/ title="Module: ncbi.datasets.openapi.model.v1_gene_dataset_request_sort" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_dataset_request_sort><span>v1_gene_dataset_request_sort</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_dataset_request_sort_field-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_gene_dataset_request_sort_field/ title="Module: ncbi.datasets.openapi.model.v1_gene_dataset_request_sort_field" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_dataset_request_sort_field><span>v1_gene_dataset_request_sort_field</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_dataset_request_symbols_for_taxon-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_gene_dataset_request_symbols_for_taxon/ title="Module: ncbi.datasets.openapi.model.v1_gene_dataset_request_symbols_for_taxon" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_dataset_request_symbols_for_taxon><span>v1_gene_dataset_request_symbols_for_taxon</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_descriptor-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_gene_descriptor/ title="Module: ncbi.datasets.openapi.model.v1_gene_descriptor" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_descriptor><span>v1_gene_descriptor</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_descriptor_gene_type-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_gene_descriptor_gene_type/ title="Module: ncbi.datasets.openapi.model.v1_gene_descriptor_gene_type" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_descriptor_gene_type><span>v1_gene_descriptor_gene_type</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_descriptor_rna_type-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/model/v1_gene_descriptor_rna_type/ title="Module: ncbi.datasets.openapi.model.v1_gene_descriptor_rna_type" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodelv1_gene_descriptor_rna_type><span>v1_gene_descriptor_rna_type</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodels-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/models/ title="Module: OpenAPI Models" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapimodels><span>models</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapirest-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/openapi/rest/ title="Module: ncbi.datasets.openapi.rest" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetsopenapirest><span>rest</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetspackage-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/package/ title="Package: ncbi.datasets.package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languagespythonapincbidatasetspackage><span>package</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagespythonapincbidatasetspackagedataset-li><a href=/datasets/docs/v1/languages/python/api/ncbi.datasets/package/dataset/ title="Module: ncbi.datasets.package.dataset" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1languagespythonapincbidatasetspackagedataset><span>dataset</span></a></li></ul></li></ul></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1languagesr-li><a href=/datasets/docs/v1/languages/r/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1languagesr><span>R</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child active-path" id=m-datasetsdocsv1reference-docs-li><a href=/datasets/docs/v1/reference-docs/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docs><span>Reference</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv1reference-docscommand-line-li><a href=/datasets/docs/v1/reference-docs/command-line/ title="Command line tool reference" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-line><span>Command line</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformat-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedataformat><span>dataformat</span></a><ul class="ul-4 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformattsv-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/tsv/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedataformattsv><span>tsv</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_genome-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/tsv/dataformat_tsv_genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_genome><span>genome</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_genome-seq-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/tsv/dataformat_tsv_genome-seq/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_genome-seq><span>genome-seq</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_gene-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/tsv/dataformat_tsv_gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_gene><span>gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_virus-genome-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/tsv/dataformat_tsv_virus-genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_virus-genome><span>virus-genome</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_microbigge-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/tsv/dataformat_tsv_microbigge/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_microbigge><span>microbigge</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_prok-gene-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/tsv/dataformat_tsv_prok-gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_prok-gene><span>prok-gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_prok-gene-location-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/tsv/dataformat_tsv_prok-gene-location/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformattsvdataformat_tsv_prok-gene-location><span>prok-gene-location</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatexcel-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/excel/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedataformatexcel><span>excel</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_genome-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/excel/dataformat_excel_genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_genome><span>genome</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_genome-seq-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/excel/dataformat_excel_genome-seq/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_genome-seq><span>genome-seq</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_gene-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/excel/dataformat_excel_gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_gene><span>gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_virus-genome-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/excel/dataformat_excel_virus-genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_virus-genome><span>virus-genome</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_microbigge-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/excel/dataformat_excel_microbigge/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_microbigge><span>microbigge</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_prok-gene-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/excel/dataformat_excel_prok-gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_prok-gene><span>prok-gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_prok-gene-location-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/excel/dataformat_excel_prok-gene-location/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatexceldataformat_excel_prok-gene-location><span>prok-gene-location</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatdataformat_catalog-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/dataformat_catalog/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatdataformat_catalog><span>catalog</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatcompletion-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/completion/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedataformatcompletion><span>completion</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatcompletiondataformat_completion_bash-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/completion/dataformat_completion_bash/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatcompletiondataformat_completion_bash><span>bash</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatcompletiondataformat_completion_zsh-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/completion/dataformat_completion_zsh/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatcompletiondataformat_completion_zsh><span>zsh</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatcompletiondataformat_completion_fish-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/completion/dataformat_completion_fish/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatcompletiondataformat_completion_fish><span>fish</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatcompletiondataformat_completion_powershell-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/completion/dataformat_completion_powershell/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatcompletiondataformat_completion_powershell><span>powershell</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedataformatdataformat_version-li><a href=/datasets/docs/v1/reference-docs/command-line/dataformat/dataformat_version/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedataformatdataformat_version><span>version</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasets-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasets><span>datasets</span></a><ul class="ul-4 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummary-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetssummary><span>summary</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryvirus-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/virus/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryvirus><span>virus</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryvirusgenome-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/virus/genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryvirusgenome><span>genome</span></a><ul class="ul-7 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryvirusgenomedatasets_summary_virus_genome_taxon-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/virus/genome/datasets_summary_virus_genome_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryvirusgenomedatasets_summary_virus_genome_taxon><span>taxon</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryvirusgenomedatasets_summary_virus_genome_accession-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/virus/genome/datasets_summary_virus_genome_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryvirusgenomedatasets_summary_virus_genome_accession><span>accession</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygene-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygene><span>gene</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenedatasets_summary_gene_gene-id-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/gene/datasets_summary_gene_gene-id/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenedatasets_summary_gene_gene-id><span>gene-id</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenedatasets_summary_gene_symbol-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/gene/datasets_summary_gene_symbol/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenedatasets_summary_gene_symbol><span>symbol</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenedatasets_summary_gene_accession-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/gene/datasets_summary_gene_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenedatasets_summary_gene_accession><span>accession</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenedatasets_summary_gene_taxon-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/gene/datasets_summary_gene_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenedatasets_summary_gene_taxon><span>taxon</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenome-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenome><span>genome</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenomedatasets_summary_genome_accession-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/genome/datasets_summary_genome_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenomedatasets_summary_genome_accession><span>accession</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenomedatasets_summary_genome_taxon-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/genome/datasets_summary_genome_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummarygenomedatasets_summary_genome_taxon><span>taxon</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryortholog-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/ortholog/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryortholog><span>ortholog</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryorthologdatasets_summary_ortholog_gene-id-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/ortholog/datasets_summary_ortholog_gene-id/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryorthologdatasets_summary_ortholog_gene-id><span>gene-id</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryorthologdatasets_summary_ortholog_symbol-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/ortholog/datasets_summary_ortholog_symbol/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryorthologdatasets_summary_ortholog_symbol><span>symbol</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryorthologdatasets_summary_ortholog_accession-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/summary/ortholog/datasets_summary_ortholog_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetssummaryorthologdatasets_summary_ortholog_accession><span>accession</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownload-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownload><span>download</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgene-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/gene/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgene><span>gene</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_gene-id-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/gene/datasets_download_gene_gene-id/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_gene-id><span>gene-id</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_symbol-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/gene/datasets_download_gene_symbol/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_symbol><span>symbol</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_accession-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/gene/datasets_download_gene_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_accession><span>accession</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_taxon-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/gene/datasets_download_gene_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenedatasets_download_gene_taxon><span>taxon</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenome-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenome><span>genome</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenomedatasets_download_genome_accession-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/genome/datasets_download_genome_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenomedatasets_download_genome_accession><span>accession</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenomedatasets_download_genome_taxon-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/genome/datasets_download_genome_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadgenomedatasets_download_genome_taxon><span>taxon</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadvirus-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/virus/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadvirus><span>virus</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadvirusgenome-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/virus/genome/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadvirusgenome><span>genome</span></a><ul class="ul-7 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadvirusgenomedatasets_download_virus_genome_accession-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/virus/genome/datasets_download_virus_genome_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadvirusgenomedatasets_download_virus_genome_accession><span>accession</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadvirusgenomedatasets_download_virus_genome_taxon-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/virus/genome/datasets_download_virus_genome_taxon/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadvirusgenomedatasets_download_virus_genome_taxon><span>taxon</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadvirusdatasets_download_virus_protein-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/virus/datasets_download_virus_protein/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadvirusdatasets_download_virus_protein><span>protein</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadortholog-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/ortholog/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadortholog><span>ortholog</span></a><ul class="ul-6 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadorthologdatasets_download_ortholog_gene-id-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/ortholog/datasets_download_ortholog_gene-id/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadorthologdatasets_download_ortholog_gene-id><span>gene-id</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadorthologdatasets_download_ortholog_symbol-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/ortholog/datasets_download_ortholog_symbol/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadorthologdatasets_download_ortholog_symbol><span>symbol</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadorthologdatasets_download_ortholog_accession-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/download/ortholog/datasets_download_ortholog_accession/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdownloadorthologdatasets_download_ortholog_accession><span>accession</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdatasets_rehydrate-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/datasets_rehydrate/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdatasets_rehydrate><span>rehydrate</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetscompletion-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/completion/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docscommand-linedatasetscompletion><span>completion</span></a><ul class="ul-5 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetscompletiondatasets_completion_bash-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/completion/datasets_completion_bash/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetscompletiondatasets_completion_bash><span>bash</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetscompletiondatasets_completion_zsh-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/completion/datasets_completion_zsh/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetscompletiondatasets_completion_zsh><span>zsh</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetscompletiondatasets_completion_fish-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/completion/datasets_completion_fish/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetscompletiondatasets_completion_fish><span>fish</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetscompletiondatasets_completion_powershell-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/completion/datasets_completion_powershell/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetscompletiondatasets_completion_powershell><span>powershell</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docscommand-linedatasetsdatasets_version-li><a href=/datasets/docs/v1/reference-docs/command-line/datasets/datasets_version/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docscommand-linedatasetsdatasets_version><span>version</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv1reference-docsfile-formats-li><a href=/datasets/docs/v1/reference-docs/file-formats/ title="Annotation file formats" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docsfile-formats><span>File formats</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docsfile-formatsabout-ncbi-gbff-li><a href=/datasets/docs/v1/reference-docs/file-formats/about-ncbi-gbff/ title="GBFF format" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsfile-formatsabout-ncbi-gbff><span>GBFF</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docsfile-formatsabout-ncbi-gff3-li><a href=/datasets/docs/v1/reference-docs/file-formats/about-ncbi-gff3/ title="GFF3 format" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsfile-formatsabout-ncbi-gff3><span>GFF3</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child active-path" id=m-datasetsdocsv1reference-docsdata-reports-li><a href=/datasets/docs/v1/reference-docs/data-reports/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docsdata-reports><span>Report schemas</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv1reference-docsdata-reportsgene-li><a href=/datasets/docs/v1/reference-docs/data-reports/gene/ title="Gene report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsdata-reportsgene><span>Gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child active-path" id=m-datasetsdocsv1reference-docsdata-reportsgenome-assembly-li><a href=/datasets/docs/v1/reference-docs/data-reports/genome-assembly/ title="Genome assembly report" class="align-left ps-0 active td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsdata-reportsgenome-assembly><span class=td-sidebar-nav-active-item>Genome assembly</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv1reference-docsdata-reportsgenome-sequence-li><a href=/datasets/docs/v1/reference-docs/data-reports/genome-sequence/ title="Genome sequence report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsdata-reportsgenome-sequence><span>Genome sequence</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv1reference-docsdata-reportsmicrobigge-li><a href=/datasets/docs/v1/reference-docs/data-reports/microbigge/ title="MicroBIGG-E report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsdata-reportsmicrobigge><span>MicroBIGG-E</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv1reference-docsdata-reportsprokaryote-gene-li><a href=/datasets/docs/v1/reference-docs/data-reports/prokaryote-gene/ title="Prokaryote gene report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsdata-reportsprokaryote-gene><span>Prok. gene</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv1reference-docsdata-reportsprokaryote-gene-location-li><a href=/datasets/docs/v1/reference-docs/data-reports/prokaryote-gene-location/ title="Prokaryote gene location report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsdata-reportsprokaryote-gene-location><span>Prok. gene location</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv1reference-docsdata-reportsvirus-li><a href=/datasets/docs/v1/reference-docs/data-reports/virus/ title="Virus report" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsdata-reportsvirus><span>Virus</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv1reference-docsdata-packages-li><a href=/datasets/docs/v1/reference-docs/data-packages/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docsdata-packages><span>Data packages</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docsdata-packagesgene-package-li><a href=/datasets/docs/v1/reference-docs/data-packages/gene-package/ title="NCBI Datasets Gene Package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsdata-packagesgene-package><span>Gene package</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docsdata-packagesgenome-li><a href=/datasets/docs/v1/reference-docs/data-packages/genome/ title="NCBI Datasets Genome Package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsdata-packagesgenome><span>Genome package</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docsdata-packagessars-cov-2-genome-li><a href=/datasets/docs/v1/reference-docs/data-packages/sars-cov-2-genome/ title="NCBI Datasets SARS-CoV-2 Data Package" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsdata-packagessars-cov-2-genome><span>SARS-CoV-2 data package</span></a></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv1reference-docsgca-and-gcf-explained-li><a href=/datasets/docs/v1/reference-docs/gca-and-gcf-explained/ title="GenBank (GCA) and RefSeq (GCF) genome assemblies" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsgca-and-gcf-explained><span>GCA and GCF genomes</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child" id=m-datasetsdocsv1reference-docsjq-cheatsheet-li><a href=/datasets/docs/v1/reference-docs/jq-cheatsheet/ title="jq cheatsheet for genome metadata" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsjq-cheatsheet><span>jq cheatsheet</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv1reference-docsrest-api-li><a href=/datasets/docs/v1/reference-docs/rest-api/ title="NCBI Datasets v1 REST API" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1reference-docsrest-api><span>REST API</span></a><ul class="ul-3 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docsrest-apiauthentication-li><a href=/datasets/docs/v1/reference-docs/rest-api/authentication/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsrest-apiauthentication><span>Authentication</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1reference-docsrest-apideprecated_apis-li><a href=/datasets/docs/v1/reference-docs/rest-api/deprecated_apis/ title="Retired API Endpoints" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1reference-docsrest-apideprecated_apis><span>Retired Endpoints</span></a></li></ul></li></ul></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section with-child" id=m-datasetsdocsv1troubleshooting-li><a href=/datasets/docs/v1/troubleshooting/ class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__section" id=m-datasetsdocsv1troubleshooting><span>FAQs and troubleshooting</span></a><ul class="ul-2 foldable"><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1troubleshootingfaq-li><a href=/datasets/docs/v1/troubleshooting/faq/ title=FAQs class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1troubleshootingfaq><span>Frequently asked Questions</span></a></li><li class="td-sidebar-nav__section-title td-sidebar-nav__section without-child collapse" id=m-datasetsdocsv1troubleshootingmac-zip-bug-li><a href=/datasets/docs/v1/troubleshooting/mac-zip-bug/ title="Mac Safari zip archive bug" class="align-left ps-0 td-sidebar-link
|
||
td-sidebar-link__page" id=m-datasetsdocsv1troubleshootingmac-zip-bug><span>Mac zip bug</span></a></li></ul></li></ul></li></ul></nav><script src=/datasets/docs/v1/js/sidebar-tree.js></script><div id=doc-version-selector-container><div>Documentation version</div><select><option value=v1>CLI v13.x (API v1)</option><option value=v2>CLI v16+ (API v2)</option></select>
|
||
<a href=/datasets/docs/v2/troubleshooting/faq/#which-version-of-the-documentation-should-i-use>Learn more</a></div></div></div><div class="d-none d-xl-block col-xl-2 td-sidebar-toc d-print-none"><div class=td-toc><nav id=TableOfContents><ul><li><ul><li><a href=#sample-report>Sample report</a></li><li><a href=#ncbi-datasets-v1-reports-AssemblyDataReport>AssemblyDataReport Structure</a></li><li><a href=#ncbi-datasets-v1-reports-AnnotationInfo>AnnotationInfo Structure</a></li><li><a href=#ncbi-datasets-v1-reports-AssemblyInfo>AssemblyInfo Structure</a></li><li><a href=#ncbi-datasets-v1-reports-AssemblyStats>AssemblyStats Structure</a></li><li><a href=#ncbi-datasets-v1-reports-AtypicalInfo>AtypicalInfo Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioProject>BioProject Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioProjectLineage>BioProjectLineage Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleAttribute>BioSampleAttribute Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleContact>BioSampleContact Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleDescription>BioSampleDescription Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleDescriptor>BioSampleDescriptor Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleId>BioSampleId Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleOwner>BioSampleOwner Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleStatus>BioSampleStatus Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BuscoStat>BuscoStat Structure</a></li><li><a href=#ncbi-datasets-v1-reports-FeatureCounts>FeatureCounts Structure</a></li><li><a href=#ncbi-datasets-v1-reports-GeneCounts>GeneCounts Structure</a></li><li><a href=#ncbi-datasets-v1-reports-LinkedAssembly>LinkedAssembly Structure</a></li><li><a href=#ncbi-datasets-v1-reports-OrganelleInfo>OrganelleInfo Structure</a></li><li><a href=#ncbi-datasets-v1-reports-PairedAssembly>PairedAssembly Structure</a></li><li><a href=#ncbi-datasets-v1-reports-WGSInfo>WGSInfo Structure</a></li><li><a href=#ncbi-datasets-v1-reports-AssemblyStatus>AssemblyStatus Enumeration</a></li><li><a href=#ncbi-datasets-v1-reports-LinkedAssembly-LinkedAssemblyType>LinkedAssembly.LinkedAssemblyType Enumeration</a></li><li><a href=#scalar-value-types>Scalar Value Types</a></li></ul></li></ul></nav></div></div><main class="col-12 col-md-9 col-xl-8 pl-md-5" role=main><div id=possible-banner></div><div class=watermarked data-watermark=" Retired "></div><nav aria-label=breadcrumb class=d-print-none><ol class="breadcrumb spb-1"><li class=breadcrumb-item><a href=/datasets/docs/v1/>Documentation</a></li><li class=breadcrumb-item><a href=/datasets/docs/v1/reference-docs/>Reference</a></li><li class=breadcrumb-item><a href=/datasets/docs/v1/reference-docs/data-reports/>Report schemas</a></li><li class="breadcrumb-item active" aria-current=page><a href=/datasets/docs/v1/reference-docs/data-reports/genome-assembly/>Genome assembly</a></li></ol></nav><h1 class="mb-4 font-weight-bold">Genome assembly report</h1><p class="lead pb-2">Genome record accession, organism, assembly statistics, and annotation info</p><div class="d-xl-none td-toc td-toc--inline d-print-none"><a id=td-content__toc-link href=#td-content__toc data-toggle=collapse aria-controls=td-docs-toc aria-expanded=false aria-label="Toggle toc navigation"><span class=lead>Contents<i class="fas fa-chevron-right ml-2"></i></span></a><div id=td-content__toc class=collapse><nav id=TableOfContents><ul><li><ul><li><a href=#sample-report>Sample report</a></li><li><a href=#ncbi-datasets-v1-reports-AssemblyDataReport>AssemblyDataReport Structure</a></li><li><a href=#ncbi-datasets-v1-reports-AnnotationInfo>AnnotationInfo Structure</a></li><li><a href=#ncbi-datasets-v1-reports-AssemblyInfo>AssemblyInfo Structure</a></li><li><a href=#ncbi-datasets-v1-reports-AssemblyStats>AssemblyStats Structure</a></li><li><a href=#ncbi-datasets-v1-reports-AtypicalInfo>AtypicalInfo Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioProject>BioProject Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioProjectLineage>BioProjectLineage Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleAttribute>BioSampleAttribute Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleContact>BioSampleContact Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleDescription>BioSampleDescription Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleDescriptor>BioSampleDescriptor Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleId>BioSampleId Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleOwner>BioSampleOwner Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BioSampleStatus>BioSampleStatus Structure</a></li><li><a href=#ncbi-datasets-v1-reports-BuscoStat>BuscoStat Structure</a></li><li><a href=#ncbi-datasets-v1-reports-FeatureCounts>FeatureCounts Structure</a></li><li><a href=#ncbi-datasets-v1-reports-GeneCounts>GeneCounts Structure</a></li><li><a href=#ncbi-datasets-v1-reports-LinkedAssembly>LinkedAssembly Structure</a></li><li><a href=#ncbi-datasets-v1-reports-OrganelleInfo>OrganelleInfo Structure</a></li><li><a href=#ncbi-datasets-v1-reports-PairedAssembly>PairedAssembly Structure</a></li><li><a href=#ncbi-datasets-v1-reports-WGSInfo>WGSInfo Structure</a></li><li><a href=#ncbi-datasets-v1-reports-AssemblyStatus>AssemblyStatus Enumeration</a></li><li><a href=#ncbi-datasets-v1-reports-LinkedAssembly-LinkedAssemblyType>LinkedAssembly.LinkedAssemblyType Enumeration</a></li><li><a href=#scalar-value-types>Scalar Value Types</a></li></ul></li></ul></nav></div><button id=td-content__toc-link-expanded href=#td-content__toc class="btn btn-small ml-1 my-2 py-0 px-3" data-toggle=collapse aria-controls=td-docs-toc aria-expanded=true aria-label="Toggle toc navigation"></button></div><style>.td-content table{border:1px solid #ccc}@media screen and (min-width:600px){.td-content table{display:table}}@media screen and (max-width:400px){.td-content table td{white-space:nowrap!important}}.td-content table th{white-space:nowrap}summary>h3{display:inline-block}</style><div class=td-content><h1>Genome assembly report</h1><div class=lead>Genome record accession, organism, assembly statistics, and annotation info</div><header class=article-meta></header><div class=dataset-filename-content><p>The downloaded genome package contains a genome assembly
|
||
data report in <a href=https://jsonlines.readthedocs.io/>JSON Lines</a>
|
||
format in the file:<br><br><em>ncbi_dataset/data/data_report.jsonl</em><br><br>Each line of the genome assembly data report file is a hierarchical <a href=https://www.json.org/json-en.html>JSON</a>
|
||
object that represents a single genome assembly record. The schema of the genome assembly record is defined in the tables
|
||
below where each row describes a single field in the report or a sub-structure, which is a collection of fields.
|
||
The outermost structure of the report is <em>AssemblyDataReport</em>.</p><p>Table fields that include a <em>Table Field Mnemonic</em> can be used with the
|
||
<a href=/datasets/v1/docs/reference-docs/command-line/dataformat/>dataformat</a> command-line tool's <nobr><code>--fields</code></nobr> option
|
||
Refer to the <a href=/datasets/v1/docs/reference-docs/command-line/dataformat/>dataformat</a> CLI tool reference to see how you can use this
|
||
tool to transform assembly data reports from JSON Lines to tabular formats.</p></div><details class=data-report-sample><summary><h3 id=sample-report>Sample report</h3></summary><div class=highlight><pre style=background-color:#f0f3f3;-moz-tab-size:4;-o-tab-size:4;tab-size:4><code class=language-json data-lang=json>{
|
||
<span style=color:#309;font-weight:700>"annotationInfo"</span>: {
|
||
<span style=color:#309;font-weight:700>"busco"</span>: {
|
||
<span style=color:#309;font-weight:700>"buscoLineage"</span>: <span style=color:#c30>"primates_odb10"</span>,
|
||
<span style=color:#309;font-weight:700>"buscoVer"</span>: <span style=color:#c30>"5.7.1"</span>,
|
||
<span style=color:#309;font-weight:700>"complete"</span>: <span style=color:#f60>0.9887518</span>,
|
||
<span style=color:#309;font-weight:700>"duplicated"</span>: <span style=color:#f60>0.009433962</span>,
|
||
<span style=color:#309;font-weight:700>"fragmented"</span>: <span style=color:#f60>0.0045718434</span>,
|
||
<span style=color:#309;font-weight:700>"missing"</span>: <span style=color:#f60>0.0066763423</span>,
|
||
<span style=color:#309;font-weight:700>"singleCopy"</span>: <span style=color:#f60>0.97931784</span>,
|
||
<span style=color:#309;font-weight:700>"totalCount"</span>: <span style=color:#c30>"13780"</span>
|
||
},
|
||
<span style=color:#309;font-weight:700>"name"</span>: <span style=color:#c30>"GCF_000001405.40-RS_2024_08"</span>,
|
||
<span style=color:#309;font-weight:700>"releaseDate"</span>: <span style=color:#c30>"2024-08-23"</span>,
|
||
<span style=color:#309;font-weight:700>"reportUrl"</span>: <span style=color:#c30>"https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Homo_sapiens/GCF_000001405.40-RS_2024_08.html"</span>,
|
||
<span style=color:#309;font-weight:700>"source"</span>: <span style=color:#c30>"NCBI RefSeq"</span>,
|
||
<span style=color:#309;font-weight:700>"stats"</span>: {
|
||
<span style=color:#309;font-weight:700>"geneCounts"</span>: {
|
||
<span style=color:#309;font-weight:700>"nonCoding"</span>: <span style=color:#f60>22163</span>,
|
||
<span style=color:#309;font-weight:700>"other"</span>: <span style=color:#f60>411</span>,
|
||
<span style=color:#309;font-weight:700>"proteinCoding"</span>: <span style=color:#f60>20078</span>,
|
||
<span style=color:#309;font-weight:700>"pseudogene"</span>: <span style=color:#f60>17063</span>,
|
||
<span style=color:#309;font-weight:700>"total"</span>: <span style=color:#f60>59715</span>
|
||
}
|
||
}
|
||
},
|
||
<span style=color:#309;font-weight:700>"assemblyInfo"</span>: {
|
||
<span style=color:#309;font-weight:700>"assemblyAccession"</span>: <span style=color:#c30>"GCF_000001405.40"</span>,
|
||
<span style=color:#309;font-weight:700>"assemblyLevel"</span>: <span style=color:#c30>"Chromosome"</span>,
|
||
<span style=color:#309;font-weight:700>"assemblyName"</span>: <span style=color:#c30>"GRCh38.p14"</span>,
|
||
<span style=color:#309;font-weight:700>"assemblyStatus"</span>: <span style=color:#c30>"current"</span>,
|
||
<span style=color:#309;font-weight:700>"assemblyType"</span>: <span style=color:#c30>"haploid-with-alt-loci"</span>,
|
||
<span style=color:#309;font-weight:700>"bioprojectLineage"</span>: [
|
||
{
|
||
<span style=color:#309;font-weight:700>"bioprojects"</span>: [
|
||
{
|
||
<span style=color:#309;font-weight:700>"accession"</span>: <span style=color:#c30>"PRJNA31257"</span>,
|
||
<span style=color:#309;font-weight:700>"title"</span>: <span style=color:#c30>"The Human Genome Project, currently maintained by the Genome Reference Consortium (GRC)"</span>
|
||
}
|
||
]
|
||
}
|
||
],
|
||
<span style=color:#309;font-weight:700>"blastUrl"</span>: <span style=color:#c30>"https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastSearch&PROG_DEF=blastn&BLAST_SPEC=GDH_GCF_000001405.40"</span>,
|
||
<span style=color:#309;font-weight:700>"currentAssemblyAccession"</span>: <span style=color:#c30>"GCF_000001405.40"</span>,
|
||
<span style=color:#309;font-weight:700>"description"</span>: <span style=color:#c30>"Genome Reference Consortium Human Build 38 patch release 14 (GRCh38.p14)"</span>,
|
||
<span style=color:#309;font-weight:700>"genbankAssmAccession"</span>: <span style=color:#c30>"GCA_000001405.29"</span>,
|
||
<span style=color:#309;font-weight:700>"pairedAssembly"</span>: {
|
||
<span style=color:#309;font-weight:700>"accession"</span>: <span style=color:#c30>"GCA_000001405.29"</span>,
|
||
<span style=color:#309;font-weight:700>"status"</span>: <span style=color:#c30>"current"</span>
|
||
},
|
||
<span style=color:#309;font-weight:700>"pairedAssemblyAccession"</span>: <span style=color:#c30>"GCA_000001405.29"</span>,
|
||
<span style=color:#309;font-weight:700>"refseqAssmAccession"</span>: <span style=color:#c30>"GCF_000001405.40"</span>,
|
||
<span style=color:#309;font-weight:700>"refseqCategory"</span>: <span style=color:#c30>"reference genome"</span>,
|
||
<span style=color:#309;font-weight:700>"submissionDate"</span>: <span style=color:#c30>"2022-02-03"</span>,
|
||
<span style=color:#309;font-weight:700>"submitter"</span>: <span style=color:#c30>"Genome Reference Consortium"</span>,
|
||
<span style=color:#309;font-weight:700>"ucscAssmName"</span>: <span style=color:#c30>"hg38"</span>
|
||
},
|
||
<span style=color:#309;font-weight:700>"assemblyStats"</span>: {
|
||
<span style=color:#309;font-weight:700>"contigL50"</span>: <span style=color:#f60>18</span>,
|
||
<span style=color:#309;font-weight:700>"contigN50"</span>: <span style=color:#f60>57879411</span>,
|
||
<span style=color:#309;font-weight:700>"gapsBetweenScaffoldsCount"</span>: <span style=color:#f60>349</span>,
|
||
<span style=color:#309;font-weight:700>"gcCount"</span>: <span style=color:#c30>"1374283647"</span>,
|
||
<span style=color:#309;font-weight:700>"numberOfComponentSequences"</span>: <span style=color:#f60>35611</span>,
|
||
<span style=color:#309;font-weight:700>"numberOfContigs"</span>: <span style=color:#f60>996</span>,
|
||
<span style=color:#309;font-weight:700>"numberOfScaffolds"</span>: <span style=color:#f60>470</span>,
|
||
<span style=color:#309;font-weight:700>"scaffoldL50"</span>: <span style=color:#f60>16</span>,
|
||
<span style=color:#309;font-weight:700>"scaffoldN50"</span>: <span style=color:#f60>67794873</span>,
|
||
<span style=color:#309;font-weight:700>"totalNumberOfChromosomes"</span>: <span style=color:#f60>24</span>,
|
||
<span style=color:#309;font-weight:700>"totalSequenceLength"</span>: <span style=color:#c30>"3099441038"</span>,
|
||
<span style=color:#309;font-weight:700>"totalUngappedLength"</span>: <span style=color:#c30>"2948318359"</span>
|
||
},
|
||
<span style=color:#309;font-weight:700>"commonName"</span>: <span style=color:#c30>"human"</span>,
|
||
<span style=color:#309;font-weight:700>"organelleInfo"</span>: [
|
||
{
|
||
<span style=color:#309;font-weight:700>"assemblyName"</span>: <span style=color:#c30>"GRCh38.p14"</span>,
|
||
<span style=color:#309;font-weight:700>"description"</span>: <span style=color:#c30>"Mitochondrion"</span>,
|
||
<span style=color:#309;font-weight:700>"submitter"</span>: <span style=color:#c30>"Genome Reference Consortium"</span>
|
||
}
|
||
],
|
||
<span style=color:#309;font-weight:700>"organismName"</span>: <span style=color:#c30>"Homo sapiens"</span>,
|
||
<span style=color:#309;font-weight:700>"taxId"</span>: <span style=color:#f60>9606</span>
|
||
}</code></pre></div></details><h3 id=ncbi-datasets-v1-reports-AssemblyDataReport>AssemblyDataReport Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>commonName</code></td><td><code>common-name</code></td><td>Common name</td><td><a href=#string><code>string</code></a></td><td>Vernacular name associated with a particular taxon</td><td><code>Human</code><br><code>zebrafish</code><br><code>pacific white shrimp</code><br></td></tr><tr><td><code>organismName</code></td><td><code>organism-name</code></td><td>Organism name</td><td><a href=#string><code>string</code></a></td><td>Scientific name of the species or subspecies</td><td><code>Homo sapiens</code><br><code>Arabidopsis thaliana</code><br><code>Canis lupus familiaris</code><br></td></tr><tr><td><code>breed</code></td><td><code>breed</code></td><td>Breed</td><td><a href=#string><code>string</code></a></td><td>A homogenous group of animals within a domesticated species</td><td><code>Hereford</code><br><code>boxer</code><br></td></tr><tr><td><code>cultivar</code></td><td><code>cultivar</code></td><td>Cultivar</td><td><a href=#string><code>string</code></a></td><td>A variety of plant within a species produced and maintained by cultivation</td><td><code>B73</code><br></td></tr><tr><td><code>ecotype</code></td><td><code>ecotype</code></td><td>Ecotype</td><td><a href=#string><code>string</code></a></td><td>A population or subspecies occupying a distinct habitat</td><td><code>Alpine</code><br></td></tr><tr><td><code>isolate</code></td><td><code>isolate</code></td><td>Isolate</td><td><a href=#string><code>string</code></a></td><td>The individual isolate from which the sequences in the genome assembly were derived</td><td><code>L1 Dominette 01449 registration number 42190680</code><br><code>Pmale09</code><br></td></tr><tr><td><code>sex</code></td><td><code>sex</code></td><td>Sex</td><td><a href=#string><code>string</code></a></td><td>Male or female</td><td><code>female</code><br></td></tr><tr><td><code>strain</code></td><td><code>strain</code></td><td>Strain</td><td><a href=#string><code>string</code></a></td><td>A genetic variant, subtype or culture within a species</td><td></td></tr><tr><td><code>taxId</code></td><td><code>tax-id</code></td><td>Taxonomic ID</td><td><a href=#uint32><code>uint32</code></a></td><td>The <a href=https://www.ncbi.nlm.nih.gov/taxonomy/>NCBI Taxonomy</a> identifier for the organism from which thegenome assembly was derived.</td><td></td></tr><tr><td><code>assemblyInfo</code></td><td><code>assminfo-</code></td><td>Assembly</td><td><a href=#ncbi-datasets-v1-reports-AssemblyInfo><code>AssemblyInfo</code></a></td><td>Metadata for the genome assembly submission</td><td></td></tr><tr><td><code>assemblyStats</code></td><td><code>assmstats-</code></td><td>Assembly Stats</td><td><a href=#ncbi-datasets-v1-reports-AssemblyStats><code>AssemblyStats</code></a></td><td>Global statistics for the genome assembly</td><td></td></tr><tr><td><code>organelleInfo repeated</code></td><td><code>organelle-</code></td><td>Organelle</td><td><a href=#ncbi-datasets-v1-reports-OrganelleInfo><code>OrganelleInfo</code></a></td><td>Metadata for all associated organelle genomes</td><td></td></tr><tr><td><code>annotationInfo</code></td><td><code>annotinfo-</code></td><td>Annotation Info</td><td><a href=#ncbi-datasets-v1-reports-AnnotationInfo><code>AnnotationInfo</code></a></td><td>Metadata and statistics for the genome assembly annotation, when available</td><td></td></tr><tr><td><code>wgsInfo</code></td><td><code>wgs-</code></td><td>WGS</td><td><a href=#ncbi-datasets-v1-reports-WGSInfo><code>WGSInfo</code></a></td><td>Metadata pertaining to the Whole Genome Shotgun (WGS) record for the genome assembliesthat are complete genomes. Those that are clone-based do not haveWGS-master records.</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-AnnotationInfo>AnnotationInfo Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>name</code></td><td><code>name</code></td><td>Name</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>source</code></td><td><code>source</code></td><td>Source</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>releaseDate</code></td><td><code>release-date</code></td><td>Release Date</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>reportUrl</code></td><td><code>report-url</code></td><td>Report URL</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>stats</code></td><td><code>featcount-</code></td><td>Count</td><td><a href=#ncbi-datasets-v1-reports-FeatureCounts><code>FeatureCounts</code></a></td><td></td><td></td></tr><tr><td><code>busco</code></td><td><code>busco-</code></td><td>BUSCO</td><td><a href=#ncbi-datasets-v1-reports-BuscoStat><code>BuscoStat</code></a></td><td></td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-AssemblyInfo>AssemblyInfo Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>assemblyAccession</code></td><td><code>accession</code></td><td>Accession</td><td><a href=#string><code>string</code></a></td><td>The GenColl assembly accession</td><td><code>GCF_000001405.40</code><br></td></tr><tr><td><code>currentAssemblyAccession</code></td><td><code>current-accession</code></td><td>Current Accession</td><td><a href=#string><code>string</code></a></td><td>The latest GenColl assembly accession for this revision chain</td><td><code>GCF_000001405.40</code><br></td></tr><tr><td><code>assemblyStatus</code></td><td><code>status</code></td><td>Status</td><td><a href=#ncbi-datasets-v1-reports-AssemblyStatus><code>AssemblyStatus</code></a></td><td>The GenColl assembly status</td><td><code>current</code><br></td></tr><tr><td><code>pairedAssemblyAccession</code></td><td><code>paired_accession</code></td><td>Paired Accession</td><td><a href=#string><code>string</code></a></td><td>The GenBank or RefSeq assembly accession paired with this assembly</td><td><code>GCA_000001405.28</code><br></td></tr><tr><td><code>pairedAssembly</code></td><td><code>paired-assm</code></td><td>Paired Assembly</td><td><a href=#ncbi-datasets-v1-reports-PairedAssembly><code>PairedAssembly</code></a></td><td>Metadata from the GenBank or RefSeq assembly paired with this one</td><td></td></tr><tr><td><code>assemblyLevel</code></td><td><code>level</code></td><td>Level</td><td><a href=#string><code>string</code></a></td><td>The level at which a genome has been assembled</td><td><code>chromosome</code><br><code>scaffold</code><br><code>contig</code><br></td></tr><tr><td><code>assemblyName</code></td><td><code>name</code></td><td>Name</td><td><a href=#string><code>string</code></a></td><td>The assembly submitter’s name for the genome assembly, when provided. Otherwise, a default name in theform ASM#####v# is assigned</td><td><code>GRCh38.p14</code><br><code>ASM985889v3</code><br></td></tr><tr><td><code>assemblyType</code></td><td><code>type</code></td><td>Type</td><td><a href=#string><code>string</code></a></td><td>Chromosome content of the submitted genome assembly</td><td><code>haploid-with-alt-loci</code><br><code>haploid</code><br></td></tr><tr><td><code>bioprojectLineage repeated</code></td><td><code>bioproject-</code></td><td>BioProject</td><td><a href=#ncbi-datasets-v1-reports-BioProjectLineage><code>BioProjectLineage</code></a></td><td>The lineage of BioProject accessions. The specific BioProject which produced the sequences in thegenome assembly is listed first, followed in order by its antecendents.</td><td></td></tr><tr><td><code>submissionDate</code></td><td><code>submission-date</code></td><td>Submission Date</td><td><a href=#string><code>string</code></a></td><td>Date the assembly was submitted to NCBI</td><td></td></tr><tr><td><code>description</code></td><td><code>description</code></td><td>Description</td><td><a href=#string><code>string</code></a></td><td>Long description for this genome</td><td></td></tr><tr><td><code>genbankAssmAccession</code></td><td><code>genbank-assm-accession</code></td><td>GenBank Accession</td><td><a href=#string><code>string</code></a></td><td>Accession for the GenBank assembly is the unique identifier for the set of sequences in this particular version ofthe genome assembly.</td><td><code>GCA_000001405.28</code><br></td></tr><tr><td><code>submitter</code></td><td><code>submitter</code></td><td>Submitter</td><td><a href=#string><code>string</code></a></td><td>The submitting consortium or organization. Full submitter information is available in the BioProject</td><td></td></tr><tr><td><code>refseqCategory</code></td><td><code>refseq-category</code></td><td>Refseq Category</td><td><a href=#string><code>string</code></a></td><td>The RefSeq Category is either reference or representative genome and indicates the RefSeq project classification</td><td><code>reference genome</code><br><code>representative genome</code><br></td></tr><tr><td><code>refseqAssmAccession</code></td><td><code>refseq-assm-accession</code></td><td>RefSeq Accession</td><td><a href=#string><code>string</code></a></td><td>RefSeq assembly accession is the unique identifier for the set of sequences in this particular version ofthe genome assembly.</td><td><code>GCF_000001405.40</code><br></td></tr><tr><td><code>ucscAssmName</code></td><td><code>ucsc-assm-name</code></td><td>UCSC Assembly Name</td><td><a href=#string><code>string</code></a></td><td>Genome name ascribed to this assembly by the UC Santa Cruz genome browser</td><td><code>hg38</code><br></td></tr><tr><td><code>linkedAssemblies repeated</code></td><td><code>linked-assm</code></td><td>Linked Assembly</td><td><a href=#ncbi-datasets-v1-reports-LinkedAssembly><code>LinkedAssembly</code></a></td><td>Genome assemblies derived from the same diploid individual</td><td></td></tr><tr><td><code>atypical</code></td><td><code>atypical</code></td><td>Atypical</td><td><a href=#ncbi-datasets-v1-reports-AtypicalInfo><code>AtypicalInfo</code></a></td><td>Information on atypical genomes - genomes that have assembly issues or are otherwise atypical</td><td></td></tr><tr><td><code>sequencingTech</code></td><td><code>sequencing-tech</code></td><td>Sequencing Tech</td><td><a href=#string><code>string</code></a></td><td>Sequencing technology used to sequence this genome</td><td></td></tr><tr><td><code>biosampleAccession</code></td><td><code>biosample-accession</code></td><td>BioSample Accession</td><td><a href=#string><code>string</code></a></td><td>NCBI BioSample Accession for the BioSample from which the sequences in the genomeassembly were obtained.</td><td><code>SAMN03145444</code><br></td></tr><tr><td><code>biosample</code></td><td><code>biosample-</code></td><td>BioSample</td><td><a href=#ncbi-datasets-v1-reports-BioSampleDescriptor><code>BioSampleDescriptor</code></a></td><td>NCBI BioSample from which the sequences in the genome assembly were obtained.</td><td></td></tr><tr><td><code>blastUrl</code></td><td><code>blast-url</code></td><td>Blast URL</td><td><a href=#string><code>string</code></a></td><td>URL to blast page for this assembly</td><td></td></tr><tr><td><code>comments</code></td><td><em>coming soon</em></td><td><em>coming soon</em></td><td><a href=#string><code>string</code></a></td><td>Freeform comments</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-AssemblyStats>AssemblyStats Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>totalNumberOfChromosomes</code></td><td><code>total-number-of-chromosomes</code></td><td>Total Number of Chromosomes</td><td><a href=#uint32><code>uint32</code></a></td><td>Count of nuclear chromosomes, organelles and plasmids in a submitted genome assembly</td><td></td></tr><tr><td><code>totalSequenceLength</code></td><td><code>total-sequence-len</code></td><td>Total Sequence Length</td><td><a href=#uint64><code>uint64</code></a></td><td>Total sequence length of the nuclear genome including unplaced and unlocalized sequences</td><td></td></tr><tr><td><code>totalUngappedLength</code></td><td><code>total-ungapped-len</code></td><td>Total Ungapped Length</td><td><a href=#uint64><code>uint64</code></a></td><td>Total length of all top-level sequences ignoring gaps. Any stretch of 10 or more Ns in a sequence is treated like a gap</td><td></td></tr><tr><td><code>numberOfContigs</code></td><td><code>number-of-contigs</code></td><td>Number of Contigs</td><td><a href=#uint32><code>uint32</code></a></td><td>Total number of sequence contigs in the assembly. Any stretch of 10 or more Ns in a sequence is treated as a gap between twocontigs in a scaffold when counting contigs and calculating contig N50 & L50 values</td><td></td></tr><tr><td><code>contigN50</code></td><td><code>contig-n50</code></td><td>Contig N50</td><td><a href=#uint32><code>uint32</code></a></td><td>Length such that sequence contigs of this length or longer include half the bases of the assembly</td><td></td></tr><tr><td><code>contigL50</code></td><td><code>contig-l50</code></td><td>Contig L50</td><td><a href=#uint32><code>uint32</code></a></td><td>Number of sequence contigs that are longer than, or equal to, the N50 length and therefore include half the bases of the assembly</td><td></td></tr><tr><td><code>numberOfScaffolds</code></td><td><code>number-of-scaffolds</code></td><td>Number of Scaffolds</td><td><a href=#uint32><code>uint32</code></a></td><td>Number of scaffolds including placed, unlocalized, unplaced, alternate loci and patch scaffolds</td><td></td></tr><tr><td><code>scaffoldN50</code></td><td><code>scaffold-n50</code></td><td>Scaffold N50</td><td><a href=#uint32><code>uint32</code></a></td><td>Length such that scaffolds of this length or longer include half the bases of the assembly</td><td></td></tr><tr><td><code>scaffoldL50</code></td><td><code>scaffold-l50</code></td><td>Scaffold L50</td><td><a href=#uint32><code>uint32</code></a></td><td>Number of scaffolds that are longer than, or equal to, the N50 length and therefore include half the bases of the assembly</td><td></td></tr><tr><td><code>gapsBetweenScaffoldsCount</code></td><td><code>gaps-between-scaffolds-count</code></td><td>Gaps Between Scaffolds Count</td><td><a href=#uint32><code>uint32</code></a></td><td>Number of unspanned gaps between scaffolds</td><td></td></tr><tr><td><code>numberOfComponentSequences</code></td><td><code>number-of-component-sequences</code></td><td>Number of Component Sequences</td><td><a href=#uint32><code>uint32</code></a></td><td>Total number of component WGS or clone sequences in the assembly</td><td></td></tr><tr><td><code>gcCount</code></td><td><code>gc-count</code></td><td>GC Count</td><td><a href=#uint64><code>uint64</code></a></td><td>The number of GC base-pairs in the assembly</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-AtypicalInfo>AtypicalInfo Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>isAtypical</code></td><td><code>is-atypical</code></td><td>Is Atypical</td><td><a href=#bool><code>bool</code></a></td><td>If true there are assembly issues or the assembly is in some way non-standard</td><td></td></tr><tr><td><code>warnings repeated</code></td><td><code>warnings</code></td><td>Warnings</td><td><a href=#string><code>string</code></a></td><td>The reasons that the assembly is considered atypical</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-BioProject>BioProject Structure</h3><p>A BioProject is a collection of biological data related to a
|
||
single initiative, originating from a single organization or from a
|
||
consortium. A BioProject record provides users a single place to find links
|
||
to the diverse data types generated for that project. The record can be
|
||
retrieved from <a href=https://www.ncbi.nlm.nih.gov/bioproject/>NCBI BioProject</a></p><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>accession</code></td><td><code>accession</code></td><td>Accession</td><td><a href=#string><code>string</code></a></td><td>BioProject accession</td><td><code>PRJEB35387</code><br></td></tr><tr><td><code>title</code></td><td><code>title</code></td><td>Title</td><td><a href=#string><code>string</code></a></td><td>Title of the BioProject provided by the submitter</td><td><code>Sciurus carolinensis (grey squirrel) genome assembly, mSciCar1</code><br></td></tr><tr><td><code>parentAccessions repeated</code></td><td><code>parent-accessions</code></td><td>Parent Accessions</td><td><a href=#string><code>string</code></a></td><td>BioProject accession containing multiple children BioProjects</td><td><code>["PRJNA489243","PRJEB33226","PRJEB40665"]</code><br></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-BioProjectLineage>BioProjectLineage Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>bioprojects repeated</code></td><td><code>lineage-</code></td><td>Lineage</td><td><a href=#ncbi-datasets-v1-reports-BioProject><code>BioProject</code></a></td><td>A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-BioSampleAttribute>BioSampleAttribute Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>name</code></td><td><code>name</code></td><td>Name</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>value</code></td><td><code>value</code></td><td>Value</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-BioSampleContact>BioSampleContact Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>lab</code></td><td><code>lab</code></td><td>Lab</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-BioSampleDescription>BioSampleDescription Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>title</code></td><td><code>title</code></td><td>Title</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>organism</code></td><td><code>organism-</code></td><td>Organism</td><td><a href=#ncbi-datasets-v1-reports-Organism><code>Organism</code></a></td><td></td><td></td></tr><tr><td><code>comment</code></td><td><code>comment</code></td><td>Comment</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-BioSampleDescriptor>BioSampleDescriptor Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>accession</code></td><td><code>accession</code></td><td>Accession</td><td><a href=#string><code>string</code></a></td><td></td><td><code>SAMN20055006</code><br></td></tr><tr><td><code>lastUpdated</code></td><td><code>last-updated</code></td><td>Last updated</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>publicationDate</code></td><td><code>publication-date</code></td><td>Publication date</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>submissionDate</code></td><td><code>submission-date</code></td><td>Submission date</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>sampleIds repeated</code></td><td><code>ids-</code></td><td>Sample Identifiers</td><td><a href=#ncbi-datasets-v1-reports-BioSampleId><code>BioSampleId</code></a></td><td></td><td></td></tr><tr><td><code>description</code></td><td><code>description-</code></td><td>Description</td><td><a href=#ncbi-datasets-v1-reports-BioSampleDescription><code>BioSampleDescription</code></a></td><td></td><td></td></tr><tr><td><code>owner</code></td><td><code>owner-</code></td><td>Owner</td><td><a href=#ncbi-datasets-v1-reports-BioSampleOwner><code>BioSampleOwner</code></a></td><td></td><td></td></tr><tr><td><code>models repeated</code></td><td><code>models</code></td><td>Models</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>bioprojects repeated</code></td><td><code>bioproject-</code></td><td>BioProject</td><td><a href=#ncbi-datasets-v1-reports-BioProject><code>BioProject</code></a></td><td></td><td></td></tr><tr><td><code>package</code></td><td><code>package</code></td><td>Package</td><td><a href=#string><code>string</code></a></td><td></td><td><code>MIGS.ba.air.4.0</code><br></td></tr><tr><td><code>attributes repeated</code></td><td><code>attribute-</code></td><td>Attribute</td><td><a href=#ncbi-datasets-v1-reports-BioSampleAttribute><code>BioSampleAttribute</code></a></td><td></td><td></td></tr><tr><td><code>status</code></td><td><code>status-</code></td><td>Status</td><td><a href=#ncbi-datasets-v1-reports-BioSampleStatus><code>BioSampleStatus</code></a></td><td></td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-BioSampleId>BioSampleId Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>db</code></td><td><code>db</code></td><td>Database</td><td><a href=#string><code>string</code></a></td><td></td><td><code>Wellcome Sanger Institute</code><br></td></tr><tr><td><code>label</code></td><td><code>label</code></td><td>Label</td><td><a href=#string><code>string</code></a></td><td></td><td><code>Sample name</code><br></td></tr><tr><td><code>value</code></td><td><code>value</code></td><td>Value</td><td><a href=#string><code>string</code></a></td><td></td><td><code>COG-UK/ALDP-17A6A8C</code><br></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-BioSampleOwner>BioSampleOwner Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>name</code></td><td><code>name</code></td><td>Name</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr><tr><td><code>contacts repeated</code></td><td><code>contact-</code></td><td>Contact</td><td><a href=#ncbi-datasets-v1-reports-BioSampleContact><code>BioSampleContact</code></a></td><td></td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-BioSampleStatus>BioSampleStatus Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>status</code></td><td><code>status</code></td><td>Status</td><td><a href=#string><code>string</code></a></td><td></td><td><code>live</code><br></td></tr><tr><td><code>when</code></td><td><code>when</code></td><td>When</td><td><a href=#string><code>string</code></a></td><td></td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-BuscoStat>BuscoStat Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>buscoLineage</code></td><td><code>lineage</code></td><td>Lineage</td><td><a href=#string><code>string</code></a></td><td>BUSCO Lineage</td><td></td></tr><tr><td><code>buscoVer</code></td><td><code>ver</code></td><td>Version</td><td><a href=#string><code>string</code></a></td><td>BUSCO Version</td><td></td></tr><tr><td><code>complete</code></td><td><code>complete</code></td><td>Complete</td><td><a href=#float><code>float</code></a></td><td>BUSCO score: Complete</td><td></td></tr><tr><td><code>singleCopy</code></td><td><code>singlecopy</code></td><td>Single Copy</td><td><a href=#float><code>float</code></a></td><td>BUSCO score: Single Copy</td><td></td></tr><tr><td><code>duplicated</code></td><td><code>duplicated</code></td><td>Duplicated</td><td><a href=#float><code>float</code></a></td><td>BUSCO score: Duplicated</td><td></td></tr><tr><td><code>fragmented</code></td><td><code>fragmented</code></td><td>Fragmented</td><td><a href=#float><code>float</code></a></td><td>BUSCO score: Fragmented</td><td></td></tr><tr><td><code>missing</code></td><td><code>missing</code></td><td>Missing</td><td><a href=#float><code>float</code></a></td><td>BUSCO score: Missing</td><td></td></tr><tr><td><code>totalCount</code></td><td><code>totalcount</code></td><td>Total Count</td><td><a href=#uint64><code>uint64</code></a></td><td>BUSCO score: Total Count</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-FeatureCounts>FeatureCounts Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>geneCounts</code></td><td><code>gene-</code></td><td>Gene</td><td><a href=#ncbi-datasets-v1-reports-GeneCounts><code>GeneCounts</code></a></td><td>Counts of gene types</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-GeneCounts>GeneCounts Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>total</code></td><td><code>total</code></td><td>Total</td><td><a href=#uint32><code>uint32</code></a></td><td>Total number of annotated genes</td><td></td></tr><tr><td><code>proteinCoding</code></td><td><code>protein-coding</code></td><td>Protein-coding</td><td><a href=#uint32><code>uint32</code></a></td><td>Count of annotated genes that encode a protein</td><td></td></tr><tr><td><code>nonCoding</code></td><td><code>non-coding</code></td><td>Non-coding</td><td><a href=#uint32><code>uint32</code></a></td><td>Count of transcribed non-coding genes (e.g. lncRNAs, miRNAs, rRNAs, etc…) excludes transcribed pseudogenes</td><td></td></tr><tr><td><code>pseudogene</code></td><td><code>pseudogene</code></td><td>Pseudogene</td><td><a href=#uint32><code>uint32</code></a></td><td>Count of transcribed and non-transcribed pseudogenes</td><td></td></tr><tr><td><code>other</code></td><td><code>other</code></td><td>Other</td><td><a href=#uint32><code>uint32</code></a></td><td>Count of genic region GeneIDs and non-genic regulatory GeneIDs</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-LinkedAssembly>LinkedAssembly Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>linkedAssembly</code></td><td><code>accession</code></td><td>Accession</td><td><a href=#string><code>string</code></a></td><td>The linked assembly accession</td><td><code>GCA_000212995.1</code><br></td></tr><tr><td><code>assemblyType</code></td><td><code>type</code></td><td>Type</td><td><a href=#ncbi-datasets-v1-reports-LinkedAssembly-LinkedAssemblyType><code>LinkedAssembly.LinkedAssemblyType</code></a></td><td>The linked assembly type</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-OrganelleInfo>OrganelleInfo Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>assemblyName</code></td><td><code>assembly-name</code></td><td>Assembly Name</td><td><a href=#string><code>string</code></a></td><td>Name of associated nuclear assembly</td><td></td></tr><tr><td><code>infraspecificName</code></td><td><code>infraspecific-name</code></td><td>Infraspecific Name</td><td><a href=#string><code>string</code></a></td><td>The strain, breed, cultivar or ecotype of the organism from which the sequences in the assembly were derived</td><td></td></tr><tr><td><code>bioproject repeated</code></td><td><code>bioproject-accessions</code></td><td>BioProject Accessions</td><td><a href=#string><code>string</code></a></td><td>The associated BioProject accession, when available</td><td></td></tr><tr><td><code>description</code></td><td><code>description</code></td><td>Description</td><td><a href=#string><code>string</code></a></td><td>Long description of the organelle genome</td><td></td></tr><tr><td><code>totalSeqLength</code></td><td><code>total-seq-length</code></td><td>Total Seq Length</td><td><a href=#uint64><code>uint64</code></a></td><td>Sequence length of the organelle genome</td><td></td></tr><tr><td><code>submitter</code></td><td><code>submitter</code></td><td>Submitter</td><td><a href=#string><code>string</code></a></td><td>Name of submitter</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-PairedAssembly>PairedAssembly Structure</h3><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>accession</code></td><td><code>accession</code></td><td>Accession</td><td><a href=#string><code>string</code></a></td><td>The GenColl assembly accession of the GenBank or RefSeq assembly paired with this one</td><td><code>GCF_000001405.40</code><br></td></tr><tr><td><code>status</code></td><td><code>status</code></td><td>Status</td><td><a href=#ncbi-datasets-v1-reports-AssemblyStatus><code>AssemblyStatus</code></a></td><td>GenColl Assembly status from paired record</td><td><code>current</code><br></td></tr><tr><td><code>annotationName</code></td><td><code>name</code></td><td>Name</td><td><a href=#string><code>string</code></a></td><td>Annotation name from paired record</td><td></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-WGSInfo>WGSInfo Structure</h3><p>Whole Genome Shotgun (WGS) projects are genome assemblies of incomplete genomes or incomplete chromosomes of prokaryotes
|
||
or eukaryotes that are generally being sequenced by a whole genome shotgun strategy.</p><table><thead><tr><th>Field</th><th>Table Field Mnemonic</th><th>Table Column Name</th><th>Type</th><th>Description</th><th>Examples</th></tr></thead><tbody><tr><td><code>wgsProjectAccession</code></td><td><code>project-accession</code></td><td>project accession</td><td><a href=#string><code>string</code></a></td><td></td><td><code>AAEX03</code><br><code>CABHLF01</code><br></td></tr><tr><td><code>masterWgsUrl</code></td><td><code>url</code></td><td>URL</td><td><a href=#string><code>string</code></a></td><td></td><td><code>https://www.ncbi.nlm.nih.gov/nuccore/AAEX00000000.3</code><br></td></tr><tr><td><code>wgsContigsUrl</code></td><td><code>contigs-url</code></td><td>contigs URL</td><td><a href=#string><code>string</code></a></td><td></td><td><code>https://www.ncbi.nlm.nih.gov/Traces/wgs/AAEX03</code><br></td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-AssemblyStatus>AssemblyStatus Enumeration</h3><table><thead><tr><th>Name</th><th>Number</th><th>Description</th></tr></thead><tbody><tr><td><code>ASSEMBLY_STATUS_UNKNOWN</code></td><td><code>0</code></td><td></td></tr><tr><td><code>current</code></td><td><code>1</code></td><td></td></tr><tr><td><code>previous</code></td><td><code>2</code></td><td></td></tr><tr><td><code>suppressed</code></td><td><code>3</code></td><td></td></tr><tr><td><code>retired</code></td><td><code>4</code></td><td>This is deprecated - should no longer be seen in the data.</td></tr></tbody></table><h3 id=ncbi-datasets-v1-reports-LinkedAssembly-LinkedAssemblyType>LinkedAssembly.LinkedAssemblyType Enumeration</h3><table><thead><tr><th>Name</th><th>Number</th><th>Description</th></tr></thead><tbody><tr><td><code>LINKED_ASSEMBLY_TYPE_UNKNOWN</code></td><td><code>0</code></td><td></td></tr><tr><td><code>alternate_pseudohaplotype_of_diploid</code></td><td><code>1</code></td><td>SEQUI-5245</td></tr><tr><td><code>principal_pseudohaplotype_of_diploid</code></td><td><code>2</code></td><td></td></tr><tr><td><code>maternal_haplotype_of_diploid</code></td><td><code>3</code></td><td></td></tr><tr><td><code>paternal_haplotype_of_diploid</code></td><td><code>4</code></td><td></td></tr><tr><td><code>haplotype_1</code></td><td><code>6</code></td><td></td></tr><tr><td><code>haplotype_2</code></td><td><code>7</code></td><td></td></tr><tr><td><code>haplotype_3</code></td><td><code>8</code></td><td></td></tr><tr><td><code>haplotype_4</code></td><td><code>9</code></td><td></td></tr><tr><td><code>haploid</code></td><td><code>10</code></td><td>Catch all for any value that is not explicitly listed above</td></tr></tbody></table><h3 id=scalar-value-types>Scalar Value Types</h3><table><thead><tr><th>Protocol buffers type</th><th>Notes</th><th>C++</th><th>Python</th><th>Java</th><th>Go</th></tr></thead><tbody><tr><td><a name=double><code>double</code></td><td></td><td><code>double</code></td><td><code>float</code></td><td><code>double</code></td><td><code>float64</code></td></tr><tr><td><a name=float><code>float</code></td><td></td><td><code>float</code></td><td><code>float</code></td><td><code>float</code></td><td><code>float32</code></td></tr><tr><td><a name=int32><code>int32</code></td><td>Uses variable-length encoding. Inefficient for encoding negative numbers – if your field is likely to have negative values, use sint32 instead.</td><td><code>int32</code></td><td><code>int</code></td><td><code>int</code></td><td><code>int32</code></td></tr><tr><td><a name=int64><code>int64</code></td><td>Uses variable-length encoding. Inefficient for encoding negative numbers – if your field is likely to have negative values, use sint64 instead.</td><td><code>int64</code></td><td><code>int/long</code></td><td><code>long</code></td><td><code>int64</code></td></tr><tr><td><a name=uint32><code>uint32</code></td><td>Uses variable-length encoding.</td><td><code>uint32</code></td><td><code>int/long</code></td><td><code>int</code></td><td><code>uint32</code></td></tr><tr><td><a name=uint64><code>uint64</code></td><td>Uses variable-length encoding.</td><td><code>uint64</code></td><td><code>int/long</code></td><td><code>long</code></td><td><code>uint64</code></td></tr><tr><td><a name=sint32><code>sint32</code></td><td>Uses variable-length encoding. Signed int value. These more efficiently encode negative numbers than regular int32s.</td><td><code>int32</code></td><td><code>int</code></td><td><code>int</code></td><td><code>int32</code></td></tr><tr><td><a name=sint64><code>sint64</code></td><td>Uses variable-length encoding. Signed int value. These more efficiently encode negative numbers than regular int64s.</td><td><code>int64</code></td><td><code>int/long</code></td><td><code>long</code></td><td><code>int64</code></td></tr><tr><td><a name=fixed32><code>fixed32</code></td><td>Always four bytes. More efficient than uint32 if values are often greater than 2^28.</td><td><code>uint32</code></td><td><code>int</code></td><td><code>int</code></td><td><code>uint32</code></td></tr><tr><td><a name=fixed64><code>fixed64</code></td><td>Always eight bytes. More efficient than uint64 if values are often greater than 2^56.</td><td><code>uint64</code></td><td><code>int/long</code></td><td><code>long</code></td><td><code>uint64</code></td></tr><tr><td><a name=sfixed32><code>sfixed32</code></td><td>Always four bytes.</td><td><code>int32</code></td><td><code>int</code></td><td><code>int</code></td><td><code>int32</code></td></tr><tr><td><a name=sfixed64><code>sfixed64</code></td><td>Always eight bytes.</td><td><code>int64</code></td><td><code>int/long</code></td><td><code>long</code></td><td><code>int64</code></td></tr><tr><td><a name=bool><code>bool</code></td><td></td><td><code>bool</code></td><td><code>boolean</code></td><td><code>boolean</code></td><td><code>bool</code></td></tr><tr><td><a name=string><code>string</code></td><td>A string must always contain UTF-8 encoded or 7-bit ASCII text.</td><td><code>string</code></td><td><code>str/unicode</code></td><td><code>String</code></td><td><code>string</code></td></tr><tr><td><a name=bytes><code>bytes</code></td><td>May contain any arbitrary sequence of bytes.</td><td><code>string</code></td><td><code>str</code></td><td><code>ByteString</code></td><td><code>[]byte</code></td></tr></tbody></table>Generated March 11, 2025</div><div class=c-global-meta-links><div class="td-page-meta ml-2 pb-1 pt-2 mb-0"></div></div></main></div></div></div><footer><section class=icon-section><div id=icon-section-header class=icon-section_header>Follow NCBI</div><div class="grid-container container"><div class=icon-section_container><a class=footer-icon id=footer_twitter href=https://twitter.com/ncbi aria-label=Twitter><svg width="40" height="40" viewBox="0 0 40 37" fill="none" xmlns="http://www.w3.org/2000/svg"><title>Twitter</title><g id="twitterx1008"><path id="path1008" d="M6.06736 7 16.8778 20.8991 6.00001 32.2H10.2l8.4-9.1 7.068 9.1H34L22.8 17.5 31.9 7H28.4l-7.7 8.4L14.401 7H6.06898 6.06736zM9.66753 8.73423H12.9327l16.8 21.73157h-3.163L9.66753 8.73423z" 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