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620 lines
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28 KiB
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<link rel="stylesheet" href="/cgv/static/django_uswds/uswds/css/uswds.css" />
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</style>
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<title>Comparative Genome Viewer - Home</title>
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<link rel="shortcut icon" type="image/ico" href="https://www.ncbi.nlm.nih.gov/coreutils/nwds/img/favicons/favicon.ico" />
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<meta name="description" content="CGV allows you to compare two genomes based on assembly-assembly alignments provided by NCBI."/>
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<script>
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const baseURL = '/cgv';
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/** NWDS header */
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const useOfficialGovtHeader = true;
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jsevent: event || 'click',
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// console.log(arguments);
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//if (d.jsevent == 'zoom')
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CGViewer.setNavButtons();
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// if (d.jsevent == 'zoom') d3.selectAll('.x-conn-axis').each(o=>{if (o.chr.domain) console.log(o.chr.domain[0], o.chr.domain[1] - o.chr.domain[0]);});
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args.forEach((r, k) => {
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Object.assign(d, r);
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}
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});
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ncbi.sg.ping(d);
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}, 50);
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}
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}catch(e){
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console.error(e);
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}
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}
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</script>
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<script>
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var taxid = 9544;
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var pairid = 0;
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</script>
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<script src="/cgv/static/cgv/js/c3fa117f.cgv-ping.min.js"></script>
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Logged in as:<br/>
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<a id="nws_header_accesskey_4" href="#" class="usa-sr-only" accesskey="4" tabindex="-1">Main Navigation</a>
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<!-- ========== END HEADER ========== -->
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<nav class="ncbi-topnav">
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<ul class="ncbi-topnav-list">
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<li><div tabindex="0" role="link" aria-label="Current page">CGV Home</div><div></div></li>
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<li><a href="/cgv/cm/cgv/more_info" target="_blank">Help</a></li>
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d3.select('.ncbi-topnav').on('selectstart', e => {
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e.preventDefault();
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e.stopPropagation();
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})
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.selectAll('li')
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.data(['home', 'about', 'notes'])
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.each(function(d){
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d3.select(this).selectAll('a[href]')
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.on('click._log_', e => {
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if(typeof ncbi != 'undefined' && ncbi.sg && ncbi.sg.ping){
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let page = 0;
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ncbi.sg.ping({
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jsevent: 'click',
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'cgv-event': `${page}-${d}`
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});
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//e.stopPropagation();
|
||
}
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});
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});
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</script>
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<main id="main_content" accesskey="3">
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<section class="usa-section">
|
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<h1>Comparative Genome Viewer</h1>
|
||
<span id="tool-descr">This tool allows you to compare two genomes based on assembly-assembly alignments provided by NCBI.</span>
|
||
<div class="usa-grid" hidden>
|
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<h2>Set up your view</h2>
|
||
Make a selection in each of these four steps to view assembly comparison.
|
||
<div class="usa-grid usa-row" style="margin-bottom:0;">
|
||
<div class="desktop:grid-col-2 float-left" style="width:30em;max-width:100%;margin-right:2.8em;">
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||
<label class="usa-label" for="1stOrg">1. Select a species</label>
|
||
<div class="usa-combo-box">
|
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<select class="usa-select" name="1stOrg" id="1stOrg"></select>
|
||
</div>
|
||
</div>
|
||
<div class="desktop:grid-col-2 float-left" style="width:30em;max-width:100%;">
|
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<label class="usa-label" for="2ndOrg">2. Select a second species</label>
|
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<div class="usa-combo-box">
|
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<select class="usa-select" name="2ndOrg" id="2ndOrg"></select>
|
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</div>
|
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</div>
|
||
</div><!--usa-row-->
|
||
<div class="usa-grid usa-row">
|
||
<div class="desktop:grid-col-2 float-left" style="width:30em;max-width:100%;margin-right:2.8em;">
|
||
<label class="usa-label" for="1stAcc">3. Select an assembly</label>
|
||
<div class="usa-combo-box">
|
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<select class="usa-select" name="1stAcc" id="1stAcc"></select>
|
||
</div>
|
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</div>
|
||
<div class="desktop:grid-col-2 float-left" style="width:30em;max-width:100%;">
|
||
<label class="usa-label" for="2ndAcc">4. Select a second assembly</label>
|
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<div class="usa-combo-box">
|
||
<select class="usa-select" name="2ndAcc" id="2ndAcc"></select>
|
||
</div>
|
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</div>
|
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</div><!--usa-row-->
|
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<div class="usa-grid usa-row">
|
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<ul class="usa-button-group buttons-reorder">
|
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<li class="usa-button-group__item">
|
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<button class="usa-button usa-button--outline" onclick="CGViewer.cleanForm()">Clear Form</button>
|
||
</li>
|
||
<li class="usa-button-group__item">
|
||
<button class="usa-button" id="gotoView" onclick="CGViewer.viewPair()" disabled>View Comparison</button>
|
||
</li>
|
||
</ul>
|
||
</div><!--usa-row-->
|
||
<span>
|
||
Not finding your alignment of interest?<br>
|
||
<a class="usa-link" target="blank" onclick="CGViewer.pingClick(CGViewer.pingEvents.sMenu.feedback)"
|
||
href="https://nlmenterprise.co1.qualtrics.com/jfe/form/SV_5iL6W3r2A7vY52R?ncbi_app=CGV&Source=Content_Request_Link">Fill out the form</a> to request more alignments.
|
||
</span>
|
||
</div><!--usa-grid-->
|
||
<div class="loader" style="width:600px;"></div>
|
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</section>
|
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</main>
|
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|
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<!-- ========== BEGIN FOOTER ========== -->
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<footer>
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<div id="icon-section-header" class="icon-section_header">Follow NCBI</div>
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