7061 lines
322 KiB
HTML
7061 lines
322 KiB
HTML
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<title>Biosample Attributes - BioSample - NCBI</title>
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<div class="header">
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<div class="res_logo"><h1 class="res_name"><a href="/biosample/" title="BioSample home">BioSample</a></h1><h2 class="res_tagline"></h2></div>
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<div class="search"><form method="get" action="/biosample/"><div class="search_form"><label for="database" class="offscreen_noflow">Search database</label><select id="database"><optgroup label="Recent"><option value="biosample" selected="selected">BioSample</option><option value="snp">SNP</option><option value="gene">Gene</option><option value="assembly" class="last">Assembly</option></optgroup><optgroup label="All"><option value="gquery">All Databases</option><option value="assembly">Assembly</option><option value="biocollections">Biocollections</option><option value="bioproject">BioProject</option><option value="biosample">BioSample</option><option value="books">Books</option><option value="clinvar">ClinVar</option><option value="cdd">Conserved Domains</option><option value="gap">dbGaP</option><option value="dbvar">dbVar</option><option value="gene">Gene</option><option value="genome">Genome</option><option value="gds">GEO DataSets</option><option value="geoprofiles">GEO Profiles</option><option value="gtr">GTR</option><option value="ipg">Identical Protein Groups</option><option value="medgen">MedGen</option><option value="mesh">MeSH</option><option value="nlmcatalog">NLM Catalog</option><option value="nuccore">Nucleotide</option><option value="omim">OMIM</option><option value="pmc">PMC</option><option value="protein">Protein</option><option value="proteinclusters">Protein Clusters</option><option value="protfam">Protein Family Models</option><option value="pcassay">PubChem BioAssay</option><option value="pccompound">PubChem Compound</option><option value="pcsubstance">PubChem Substance</option><option value="pubmed">PubMed</option><option value="snp">SNP</option><option value="sra">SRA</option><option value="structure">Structure</option><option value="taxonomy">Taxonomy</option><option value="toolkit">ToolKit</option><option value="toolkitall">ToolKitAll</option><option value="toolkitbookgh">ToolKitBookgh</option></optgroup></select><div class="nowrap"><label for="term" class="offscreen_noflow" accesskey="/">Search term</label><div class="nowrap"><input type="text" name="term" id="term" title="Search BioSample" value="" class="jig-ncbiclearbutton jig-ncbiautocomplete" data-jigconfig="isEnabled:false,disableUrl:'NcbiSearchBarAutoComplCtrl'" autocomplete="off" data-sbconfig="ds:'no',pjs:'no',afs:'yes'" /></div><button id="search" type="submit" class="button_search nowrap" cmd="go">Search</button></div></div></form><ul class=" inline_list searchlinks"><li>
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<a href="/biosample/advanced">Advanced</a>
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<!-- was itemctrl -->
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<div class="container">
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<div id="maincontent" class="content col twelve_col last">
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<div class="col1">
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<h1>BioSample Attributes</h1>
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<p>You can download attribute details in <a href="?format=xml">xml format</a>.</p>
|
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<p>
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Attributes describe a BioSample using structured attribute name:value pairs, for example,
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tissue:liver. BioSample maintains a list of recognized attributes which participate in one
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||
or more BioSample packages. In addition to recognized attributes, submitters may provide
|
||
any number of custom attributes to fully describe a sample.
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</p>
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<p>
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The following information is stored for recognized BioSample attributes:
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</p>
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<ul class="no_bullets">
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<li>
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<strong>Name</strong>
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<span>
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Human-readable display name for the attribute.
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</span>
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</li>
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<li>
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<strong>HarmonizedName</strong>
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<span>
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Short, canonical attribute name.
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</span>
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</li>
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<li>
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<strong>Synonym</strong>
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||
<span>
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||
Recognized alternative names for the attribute. Only space-delimited synonyms are presented in the table for brevity, but note that we treat dash and underscore characters as a space. Hence "specific_host", "specific-host" and "specific host" are all synonyms for "host".
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</span>
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||
</li>
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<li>
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<strong>Description</strong>
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<span>
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Definition of the attribute.
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||
</span>
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||
</li>
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<li>
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<strong>Format</strong>
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||
<span>
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||
Suggested format of the attribute value.
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||
</span>
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</li>
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</ul>
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<table id="attr_table" class="jig-ncbigrid" data-jigconfig="isSortable:true">
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<thead>
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<tr>
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<th>Name</th>
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<th>Harmonized name</th>
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<th>Synonyms</th>
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<th>Description</th>
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<th>Format</th>
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</tr>
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</thead>
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<tbody>
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<tr>
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<td>API gravity</td>
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<td>api</td>
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<td>api, <br />api gravity</td>
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||
<td>API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity), e.g. 31.1 API</td>
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<td>{float} {unit}</td>
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</tr>
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<tr>
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<td>EDTA inhibitor tested</td>
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<td>edta_inhibitor_tested</td>
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<td>edta inhibitor tested</td>
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<td>Was carbapenemase activity tested in the presence of EDTA? If carbapenemase activity was tested in the presence of EDTA, the response should be "yes", otherwise "no”.</td>
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<td>['', 'yes', 'no', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
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||
</tr>
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<tr>
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<td>FAO classification</td>
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||
<td>fao_class</td>
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<td>fao class, <br />fao classification, <br />soil taxonomic/fao classification</td>
|
||
<td>soil classification from the FAO World Reference Database for Soil Resources</td>
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||
<td>{term}</td>
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||
</tr>
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||
<tr>
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||
<td>FDA food industry class name</td>
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||
<td>food_industry_class</td>
|
||
<td>fda food industry class name, <br />food industry class</td>
|
||
<td>The US FDA Class is the second of five elements that comprise a FDA product code. This element is directly related to an Industry and designates the food group, source, product, use, pharmacological action, category or animal species of the product. A Class code is more specific than an Industry; for example, the Fishery/Seafood products Industry may contain Classes such as Smoked, Breaded and such, e.g., Coffee, Decaffeinated</td>
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||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>FDA food industry code name</td>
|
||
<td>food_industry_code</td>
|
||
<td>fda food industry code name, <br />food industry code</td>
|
||
<td>The US FDA Industry Code is the first of five elements that comprise an FDA product code. An Industry code determines the broadest area into which a product falls, e.g., 31 Coffee and Tea</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Food harvesting process</td>
|
||
<td>food_harvest_proc</td>
|
||
<td>food harvest proc, <br />food harvesting process</td>
|
||
<td>A harvesting process is a process which takes in some food material from an individual or community of plant or animal organisms in a given context and time, and outputs a precursor or consumable food product. This may include a part of an organism or the whole, and may involve killing the organism</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>GISAID accession</td>
|
||
<td>gisaid_accession</td>
|
||
<td>gisaid accession</td>
|
||
<td>The GISAID accession assigned to the sequence. GISAID Accession Numbers are used as unique and permanent identifiers for each virus beginning with the letters EPI and followed by numbers, to identify viruses and/or segments; https://www.gisaid.org/; e.g., EPI_ISL_1091361</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>GISAID virus name</td>
|
||
<td>gisaid_virus_name</td>
|
||
<td>gisaid virus name</td>
|
||
<td>The full virus name submitted to GISAID (https://www.gisaid.org/), e.g., hCoV-19/Belgium/rega-3187/2021</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>HIV status</td>
|
||
<td>hiv_stat</td>
|
||
<td>hiv stat, <br />hiv status</td>
|
||
<td>HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO]</td>
|
||
<td>{boolean};{boolean}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Hazard Analysis Critical Control Points (HACCP) guide food safety term</td>
|
||
<td>haccp_term</td>
|
||
<td>haccp term, <br />hazard analysis critical control points (haccp) guide food safety term</td>
|
||
<td>Hazard Analysis Critical Control Points (HACCP) food safety terms; This field accepts terms listed under HACCP guide food safety term (http://purl.obolibrary.org/obo/FOODON_03530221)</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Interagency Food Safety Analytics Collaboration (IFSAC) category</td>
|
||
<td>ifsac_category</td>
|
||
<td>ifsac category, <br />ifsac+ category, <br />interagency food safety analytics collaboration (ifsac) category</td>
|
||
<td>The IFSAC food categorization scheme has five distinct levels to which foods can be assigned, depending upon the type of food. First, foods are assigned to one of four food groups (aquatic animals, land animals, plants, and other). Food groups include increasingly specific food categories; dairy, eggs, meat and poultry, and game are in the land animal food group, and the category meat and poultry is further subdivided into more specific categories of meat (beef, pork, other meat) and poultry (chicken, turkey, other poultry). Finally, foods are differentiated by differences in food processing (such as pasteurized fluid dairy products, unpasteurized fluid dairy products, pasteurized solid and semi-solid dairy products, and unpasteurized solid and semi-solid dairy products. An IFSAC food category chart is available from https://www.cdc.gov/foodsafety/ifsac/projects/food-categorization-scheme.html PMID: 28926300, e.g., Plants:Produce:Vegetables:Herbs:Dried Herbs</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>NARMS isolate number</td>
|
||
<td>narms_isolate_number</td>
|
||
<td>narms id, <br />narms isolate number</td>
|
||
<td>isolate identifier for the collection of isolates in the National Antimicrobial Resistance Monitoring System, authority http://www.cdc.gov/narms/about/index.html, e.g., CVM N6429</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Omics Observatory ID</td>
|
||
<td>omics_observ_id</td>
|
||
<td>omics observ id, <br />omics observatory id</td>
|
||
<td>A unique identifier of the omics-enabled observatory (or comparable time series) your data derives from. This identifier should be provided by the OMICON ontology; if you require a new identifier for your time series, contact the ontology's developers. Information is available here: https://github.com/GLOMICON/omicon. This field is only applicable to records which derive from an omics time-series or observatory.</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Population Description</td>
|
||
<td>population_description</td>
|
||
<td>population description</td>
|
||
<td>The full, unabbreviated population descriptor from the Coriell Institute</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>SARS-CoV-2 diagnostic gene name 1</td>
|
||
<td>sars_cov_2_diag_gene_name_1</td>
|
||
<td>sars cov 2 diag gene name 1, <br />sars cov 2 diagnostic gene name 1</td>
|
||
<td>The name of the gene used in the first diagnostic SARS-CoV-2 RT-PCR test.</td>
|
||
<td>['', 'E (orf4)', 'M (orf5)', 'N (orf9)', 'spike (orf2)', 'ORF1ab (rep)', 'ORF1a (pp1a)', 'nsp11', 'nsp1', 'nsp2', 'nsp3', 'nsp4', 'nsp5', 'nsp6', 'nsp7', 'nsp8', 'nsp9', 'nsp10', 'nsp12 (RdRp)', 'nsp13 (Hel)', 'nsp14 (ExoN)', 'nsp15', 'nsp16', 'ORF3a', 'ORF3b', 'ORF6 (ns6)', 'ORF7a', 'ORF7b (ns7b)', 'ORF8 (ns8)', 'ORF9b', 'ORF9c', 'ORF10', 'ORF14']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>SARS-CoV-2 diagnostic gene name 2</td>
|
||
<td>sars_cov_2_diag_gene_name_2</td>
|
||
<td>sars cov 2 diag gene name 2, <br />sars cov 2 diagnostic gene name 2</td>
|
||
<td>The name of the gene used in the second diagnostic SARS-CoV-2 RT-PCR test.</td>
|
||
<td>['', 'E (orf4)', 'M (orf5)', 'N (orf9)', 'spike (orf2)', 'ORF1ab (rep)', 'ORF1a (pp1a)', 'nsp11', 'nsp1', 'nsp2', 'nsp3', 'nsp4', 'nsp5', 'nsp6', 'nsp7', 'nsp8', 'nsp9', 'nsp10', 'nsp12 (RdRp)', 'nsp13 (Hel)', 'nsp14 (ExoN)', 'nsp15', 'nsp16', 'ORF3a', 'ORF3b', 'ORF6 (ns6)', 'ORF7a', 'ORF7b (ns7b)', 'ORF8 (ns8)', 'ORF9b', 'ORF9c', 'ORF10', 'ORF14']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>SARS-CoV-2 diagnostic pcr Ct value 1</td>
|
||
<td>sars_cov_2_diag_pcr_ct_value_1</td>
|
||
<td>sars cov 2 diag pcr ct value 1, <br />sars cov 2 diagnostic pcr ct value 1</td>
|
||
<td>The cycle threshold (CT) value result from the first diagnostic SARS-CoV-2 RT-PCR test, e.g., 21</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>SARS-CoV-2 diagnostic pcr Ct value 2</td>
|
||
<td>sars_cov_2_diag_pcr_ct_value_2</td>
|
||
<td>sars cov 2 diag pcr ct value 2, <br />sars cov 2 diagnostic pcr ct value 2</td>
|
||
<td>The cycle threshold (CT) value result from the second diagnostic SARS-CoV-2 RT-PCR test, e.g., 36</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Super Population Code</td>
|
||
<td>super_population_code</td>
|
||
<td>super population code</td>
|
||
<td>The 3 letter super population abbreviation from the Coriell Institute indicating ancestry </td>
|
||
<td>['', 'AFR', 'AMR', 'EAS', 'EUR', 'SAS']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>Super Population Description</td>
|
||
<td>super_population_description</td>
|
||
<td>super population description</td>
|
||
<td>The full, unabbreviated super population descriptor from the Coriell Institute</td>
|
||
<td>['', 'African', 'Ad Mixed American', 'East Asian', 'European', 'South Asian']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>WGA amplification approach</td>
|
||
<td>wga_amp_appr</td>
|
||
<td>wga amp appr, <br />wga amplification approach</td>
|
||
<td>method used to amplify genomic DNA in preparation for sequencing. Examples: MDR, WGA-X, MDA</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>absolute air humidity</td>
|
||
<td>abs_air_humidity</td>
|
||
<td>abs air humidity</td>
|
||
<td>actual mass of water vapor - mh20 - present in the air water vapor mixture</td>
|
||
<td>{float} {unit} [kg|lb]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>additional info</td>
|
||
<td>additional_info</td>
|
||
<td></td>
|
||
<td>Information that doesn't fit anywhere else</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>address</td>
|
||
<td>address</td>
|
||
<td></td>
|
||
<td>The street name and building number where the sampling occurred</td>
|
||
<td>{integer}{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>adjacent rooms</td>
|
||
<td>adj_room</td>
|
||
<td>adj room</td>
|
||
<td>List of rooms (room number, room name) immediately adjacent to the sampling room</td>
|
||
<td>{text};{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>aerospace structure</td>
|
||
<td>aero_struc</td>
|
||
<td>aero struc</td>
|
||
<td>Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together, e.g., plane, glider</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>affection status</td>
|
||
<td>affection_status</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>age</td>
|
||
<td>age</td>
|
||
<td></td>
|
||
<td>age at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>agrochemical additions</td>
|
||
<td>agrochem_addition</td>
|
||
<td>agrochem addition, <br />history/agrochemical additions</td>
|
||
<td>addition of fertilizers, pesticides, etc. - amount and time of applications</td>
|
||
<td>{text};{float} {unit};{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>air particulate matter concentration</td>
|
||
<td>air_pm_concen</td>
|
||
<td>air pm concen, <br />resp part matter, <br />respirable particulate matter</td>
|
||
<td>concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>air temperature</td>
|
||
<td>air_temp</td>
|
||
<td>air temp</td>
|
||
<td>temperature of the air at the time of sampling</td>
|
||
<td>{float} {unit} [deg C]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>air temperature regimen</td>
|
||
<td>air_temp_regm</td>
|
||
<td>air temp regm</td>
|
||
<td>information about treatment involving an exposure to varying temperatures; should include the temperature, treatment duration, interval and total experimental duration; can include different temperature regimens</td>
|
||
<td>{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>alkalinity</td>
|
||
<td>alkalinity</td>
|
||
<td></td>
|
||
<td>alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>alkalinity method</td>
|
||
<td>alkalinity_method</td>
|
||
<td></td>
|
||
<td>Method used for alkalinity measurement</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>alkyl diethers</td>
|
||
<td>alkyl_diethers</td>
|
||
<td></td>
|
||
<td>concentration of alkyl diethers</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>altitude</td>
|
||
<td>altitude</td>
|
||
<td>alt</td>
|
||
<td>The altitude of the sample is the vertical distance between Earth's surface above Sea Level and the sampled position in the air.</td>
|
||
<td>{float} m</td>
|
||
</tr>
|
||
<tr>
|
||
<td>aluminium saturation</td>
|
||
<td>al_sat</td>
|
||
<td>al sat, <br />al saturation, <br />extreme unusual properties/al saturation</td>
|
||
<td>aluminum saturation (esp. for tropical soils)</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>aluminium saturation method</td>
|
||
<td>al_sat_meth</td>
|
||
<td>al sat meth, <br />al saturation method, <br />extreme unusual properties/al saturation method</td>
|
||
<td>reference or method used in determining Al saturation</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>aminopeptidase activity</td>
|
||
<td>aminopept_act</td>
|
||
<td>aminopept act</td>
|
||
<td>measurement of aminopeptidase activity</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ammonium</td>
|
||
<td>ammonium</td>
|
||
<td></td>
|
||
<td>concentration of ammonium</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>amniotic fluid color</td>
|
||
<td>amniotic_fluid_color</td>
|
||
<td>amniotic fluid/color</td>
|
||
<td>specification of the color of the amniotic fluid sample</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>amount of light</td>
|
||
<td>amount_light</td>
|
||
<td>amount light</td>
|
||
<td>The unit of illuminance and luminous emittance, measuring luminous flux per unit area</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>analyte type</td>
|
||
<td>analyte_type</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>anamorph</td>
|
||
<td>anamorph</td>
|
||
<td></td>
|
||
<td>Genus and species of the asexually reproducing stage of fungi - note that anamorph and teleomorph forms of the same taxon may have used taxonomic different names.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>ancestral data</td>
|
||
<td>ances_data</td>
|
||
<td>ances data</td>
|
||
<td>Information about either pedigree or other ancestral information description, e.g., parental variety in case of mutant or selection, A/3*B (meaning [(A x B) x B] x B)</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>animal environment</td>
|
||
<td>animal_env</td>
|
||
<td>animal env</td>
|
||
<td>The environment from which the animal sample was taken, e.g., veterinary clinic</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>animal feeding equipment</td>
|
||
<td>animal_feed_equip</td>
|
||
<td>animal feed equip</td>
|
||
<td>Description of the feeding equipment used for livestock. This field accepts terms listed under feed delivery (http://opendata.inra.fr/EOL/EOL_0001757). Multiple terms can be separated by one or more pipes</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>animal housing system </td>
|
||
<td>host_housing</td>
|
||
<td>animal housing, <br />host housing</td>
|
||
<td>Description of the housing system of the livestock. This field encourages terms listed under terrestrial management housing system (http://opendata.inra.fr/EOL/EOL_0001605), e.g., pen [EOL:0001902]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>animal intrusion near sample source</td>
|
||
<td>animal_intrusion</td>
|
||
<td>animal intrusion</td>
|
||
<td>Identification of animals intruding on the sample or sample site including invertebrates (such as pests or pollinators) and vertebrates (such as wildlife or domesticated animals). This field encourages terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also encourages identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes, e.g., large flies</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>animal water delivery method</td>
|
||
<td>anim_water_method</td>
|
||
<td>anim water method</td>
|
||
<td>Description of the equipment or method used to distribute water to livestock. This field accepts terms listed under water delivery equipment (http://opendata.inra.fr/EOL/EOL_0001653). Multiple terms can be separated by pipes</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>annual and seasonal precipitation</td>
|
||
<td>annual_season_precpt</td>
|
||
<td>annual season precpt, <br />mean annual and seasonal precipitation</td>
|
||
<td>mean annual and seasonal precipitation (mm)</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>annual and seasonal temperature</td>
|
||
<td>annual_season_temp</td>
|
||
<td>annual season temp, <br />mean annual and seasonal temperature</td>
|
||
<td>mean annual and seasonal temperature (oC)</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>antibiotic regimen</td>
|
||
<td>antibiotic_regm</td>
|
||
<td>antibiotic regm</td>
|
||
<td>information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment duration, interval and total experimental duration; can include multiple antibiotic regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>antimicrobial name</td>
|
||
<td>host_am</td>
|
||
<td>animal am, <br />food animal antimicrobial, <br />host am</td>
|
||
<td>The class(es) or name(s) (generic or brand) of the antimicrobial(s) given to the food animal within the last 30 days, e.g., tetracycline [CHEBI:27902]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>antimicrobial phenotype of spike-in bacteria</td>
|
||
<td>spikein_amr</td>
|
||
<td>antimicrobial phenotype of spike in bacteria, <br />spikein amr</td>
|
||
<td>Qualitative description of a microbial response to antimicrobial agents. Bacteria may be susceptible or resistant to a broad range of antibiotic drugs or drug classes, with several intermediate states or phases. This field accepts terms under antimicrobial phenotype (http://purl.obolibrary.org/obo/ARO_3004299)</td>
|
||
<td>{float} {unit};{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>antiviral treatment agent</td>
|
||
<td>antiviral_treatment_agent</td>
|
||
<td></td>
|
||
<td>What was the antiviral treatment agent?</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>architectural structure</td>
|
||
<td>arch_struc</td>
|
||
<td>arch struc</td>
|
||
<td>An architectural structure is a human-made, free-standing, immobile outdoor construction, e.g., building, shed, home</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>area sampled size</td>
|
||
<td>area_samp_size</td>
|
||
<td>area samp size</td>
|
||
<td>The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected</td>
|
||
<td>{integer} {unit} x {integer} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>aromatics wt%</td>
|
||
<td>aromatics_pc</td>
|
||
<td>aromatics pc</td>
|
||
<td>Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>asphaltenes wt%</td>
|
||
<td>asphaltenes_pc</td>
|
||
<td>asphaltenes pc</td>
|
||
<td>Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>atmospheric data</td>
|
||
<td>atmospheric_data</td>
|
||
<td></td>
|
||
<td>measurement of atmospheric data; can include multiple data</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>authority</td>
|
||
<td>authority</td>
|
||
<td></td>
|
||
<td>Authority for the species identification.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>average daily occupancy</td>
|
||
<td>avg_occup</td>
|
||
<td>avg occup</td>
|
||
<td>Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room</td>
|
||
<td>{float}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>average dew point</td>
|
||
<td>avg_dew_point</td>
|
||
<td>avg dew point</td>
|
||
<td>The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>average temperature</td>
|
||
<td>avg_temp</td>
|
||
<td>avg temp</td>
|
||
<td>The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>bacterial carbon production</td>
|
||
<td>bacteria_carb_prod</td>
|
||
<td>bacteria carb prod</td>
|
||
<td>measurement of bacterial carbon production</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>bacterial density</td>
|
||
<td>bacterial_density</td>
|
||
<td></td>
|
||
<td>Number of bacteria in sample, as defined by bacteria density (http://purl.obolibrary.org/obo/GENEPIO_0000043)</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>bacterial production</td>
|
||
<td>bac_prod</td>
|
||
<td>bac prod</td>
|
||
<td>bacterial production in the water column measured by isotope uptake</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>bacterial respiration</td>
|
||
<td>bac_resp</td>
|
||
<td>bac resp</td>
|
||
<td>measurement of bacterial respiration in the water column</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>barometric pressure</td>
|
||
<td>barometric_press</td>
|
||
<td>barometric press</td>
|
||
<td>force per unit area exerted against a surface by the weight of air above that surface</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>basin name</td>
|
||
<td>basin_name</td>
|
||
<td></td>
|
||
<td>Name of the basin, e.g. Campos</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>bathroom count</td>
|
||
<td>bathroom_count</td>
|
||
<td></td>
|
||
<td>The number of bathrooms in the building</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>bedroom count</td>
|
||
<td>bedroom_count</td>
|
||
<td></td>
|
||
<td>The number of bedrooms in the building</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>benzene</td>
|
||
<td>benzene</td>
|
||
<td></td>
|
||
<td>Concentration of benzene in the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>beta-lactamase family</td>
|
||
<td>beta_lactamase_family</td>
|
||
<td>beta lactamase family</td>
|
||
<td>Specify the beta-lactamase family for this gene.</td>
|
||
<td>['', 'ACC', 'ACT', 'ADC', 'BEL', 'CARB', 'CBP', 'CFE', 'CMY', 'CTX-M', 'DHA', 'FOX', 'GES', 'GIM', 'KPC', 'IMI', 'IMP', 'IND', 'LAT', 'MIR', 'MOX', 'NDM', 'OXA', 'PER', 'PDC', 'SHV', 'SME', 'TEM', 'VEB', 'VIM', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>biochemical oxygen demand</td>
|
||
<td>biochem_oxygen_dem</td>
|
||
<td>biochem oxygen dem</td>
|
||
<td>a measure of the relative oxygen-depletion effect of a waste contaminant</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>biocide administration</td>
|
||
<td>biocide_admin</td>
|
||
<td>biocide admin</td>
|
||
<td>List of biocides (commercial name of product and supplier) and date of administration</td>
|
||
<td>{text};{text};{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>biocide administration method</td>
|
||
<td>biocide_admin_method</td>
|
||
<td>biocide admin method</td>
|
||
<td>Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling), e.g., 150 mg/l; weekly; 4 hr; 3 days</td>
|
||
<td>{float} {unit};{Rn/start_time/end_time/duration};{duration}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>biocide used</td>
|
||
<td>biocide_used</td>
|
||
<td>biocide</td>
|
||
<td>Substance intended for preventing, neutralizing, destroying, repelling, or mitigating the effects of any pest or microorganism; that inhibits the growth, reproduction, and activity of organisms, including fungal cells; decreases the number of fungi or pests present; deters microbial growth and degradation of other ingredients in the formulation. Indicate the biocide used on the location where the sample was taken. Multiple terms can be separated by pipes, e.g., Quaternary ammonium compound|SterBac</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>biological material</td>
|
||
<td>bio_material</td>
|
||
<td>bio material, <br />biomaterial</td>
|
||
<td>Identifier for the biological material from which the nucleic acid sequenced was obtained.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>biological sample replicate</td>
|
||
<td>samp_rep_biol</td>
|
||
<td>samp rep biol</td>
|
||
<td>Measurements of biologically distinct samples that show biological variation</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>biological status</td>
|
||
<td>biol_stat</td>
|
||
<td>biol stat</td>
|
||
<td>The level of genome modification, e.g., wild, natural, semi-natural, inbred line, breeder's line, hybrid, clonal selection, mutant</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>biomass</td>
|
||
<td>biomass</td>
|
||
<td></td>
|
||
<td>amount of biomass; should include the name for the part of biomass measured, e.g. microbial, total. can include multiple measurements</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>biomaterial provider</td>
|
||
<td>biomaterial_provider</td>
|
||
<td></td>
|
||
<td>name and address of the lab or PI, or a culture collection identifier</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>biospecimen repository</td>
|
||
<td>biospecimen_repository</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>biospecimen repository sample id</td>
|
||
<td>biospecimen_repository_sample_id</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>biotic regimen</td>
|
||
<td>biotic_regm</td>
|
||
<td>biotic regm</td>
|
||
<td>Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>biovar</td>
|
||
<td>biovar</td>
|
||
<td></td>
|
||
<td>A biovar is a variant prokaryotic strain that differs physiologically and/or biochemically from other strains in a particular species.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>birth control</td>
|
||
<td>birth_control</td>
|
||
<td></td>
|
||
<td>specification of birth control medication used</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>birth date</td>
|
||
<td>birth_date</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>birth location</td>
|
||
<td>birth_location</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>bishomohopanol</td>
|
||
<td>bishomohopanol</td>
|
||
<td></td>
|
||
<td>concentration of bishomohopanol</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>blood disorder</td>
|
||
<td>blood_blood_disord</td>
|
||
<td>blood blood disord, <br />blood/blood disorder</td>
|
||
<td>history of blood disorders; can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>blood pressure diastolic</td>
|
||
<td>blood_press_diast</td>
|
||
<td>blood press diast</td>
|
||
<td>resting diastolic blood pressure, measured as mm mercury</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>blood pressure systolic</td>
|
||
<td>blood_press_syst</td>
|
||
<td>blood press syst</td>
|
||
<td>resting systolic blood pressure, measured as mm mercury</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>body habitat</td>
|
||
<td>body_habitat</td>
|
||
<td></td>
|
||
<td>original body habitat where the sample was obtained from</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>body mass index</td>
|
||
<td>body_mass_index</td>
|
||
<td>bmi</td>
|
||
<td>body mass index, calculated as weight/(height)squared</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>body product</td>
|
||
<td>body_product</td>
|
||
<td></td>
|
||
<td>substance produced by the body, e.g. stool, mucus, where the sample was obtained from</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>breed</td>
|
||
<td>breed</td>
|
||
<td></td>
|
||
<td>breed name - chiefly used in domesticated animals or plants</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>breeding history</td>
|
||
<td>breeding_history</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>breeding method</td>
|
||
<td>breeding_method</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>broad-scale environmental context</td>
|
||
<td>env_broad_scale</td>
|
||
<td>biome, <br />broad scale environmental context, <br />env biome, <br />env broad range, <br />env broad scale, <br />environment (biome), <br />environment biome</td>
|
||
<td>Add terms that identify the major environment type(s) where your sample was collected. Recommend subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one or more pipes e.g.: mangrove biome [ENVO:01000181]|estuarine biome [ENVO:01000020]
|
||
</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>bromide</td>
|
||
<td>bromide</td>
|
||
<td></td>
|
||
<td>concentration of bromide</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>building occupancy type</td>
|
||
<td>build_occup_type</td>
|
||
<td>build occup type</td>
|
||
<td>primary function for which a building or discrete part of a building is intended to be used</td>
|
||
<td>['', 'office', 'market', 'restaurant', 'residence', 'school', 'residential', 'commercial', 'low rise', 'high rise', 'wood framed', 'health care', 'airport', 'sports complex', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>building setting</td>
|
||
<td>building_setting</td>
|
||
<td></td>
|
||
<td>location (geography) where a building is set</td>
|
||
<td>['', 'urban', 'suburban', 'exurban', 'rural', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>built structure age</td>
|
||
<td>built_struc_age</td>
|
||
<td>built struc age</td>
|
||
<td>The age of the built structure since construction</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>built structure setting</td>
|
||
<td>built_struc_set</td>
|
||
<td>built struc set</td>
|
||
<td>The characterization of the location of the built structure as high or low human density, e.g., urban, rural</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>built structure type</td>
|
||
<td>built_struc_type</td>
|
||
<td>built struc type</td>
|
||
<td>A physical structure that is a body or assemblage of bodies in space to form a system capable of supporting loads</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>calcium</td>
|
||
<td>calcium</td>
|
||
<td></td>
|
||
<td>concentration of calcium</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>carbapenemase</td>
|
||
<td>carbapenemase</td>
|
||
<td></td>
|
||
<td>Does the enzyme exhibit carbapenemase activity? If the enzyme does exhibit carbapenemase activity, the response should be "yes", otherwise "no."</td>
|
||
<td>['', 'yes', 'no', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>carbon dioxide</td>
|
||
<td>carb_dioxide</td>
|
||
<td>carb dioxide</td>
|
||
<td>carbon dioxide (gas) amount or concentration at the time of sampling</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>carbon monoxide</td>
|
||
<td>carb_monoxide</td>
|
||
<td>carb monoxide</td>
|
||
<td>carbon monoxide (gas) amount or concentration at the time of sampling</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>carbon/nitrogen ratio</td>
|
||
<td>carb_nitro_ratio</td>
|
||
<td>carb nitro ratio</td>
|
||
<td>ratio of amount or concentrations of carbon to nitrogen</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ceiling area</td>
|
||
<td>ceil_area</td>
|
||
<td>ceil area</td>
|
||
<td>The area of the ceiling space within the room</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ceiling condition</td>
|
||
<td>ceil_cond</td>
|
||
<td>ceil cond</td>
|
||
<td>The physical condition of the ceiling at the time of sampling, e.g., new, visible wear, needs repair, damaged, rupture</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ceiling finish material</td>
|
||
<td>ceil_finish_mat</td>
|
||
<td>ceil finish mat</td>
|
||
<td>The type of material used to finish a ceiling, e.g., drywall, mineral fibre, tiles, PVC, plasterboard, metal, fiberglass, stucco, mineral wool/calcium silicate, wood</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ceiling signs of water/mold</td>
|
||
<td>ceil_water_mold</td>
|
||
<td>ceil water mold</td>
|
||
<td>Signs of the presence of mold or mildew on the ceiling, e.g., presence of mold visible, no presence of mold visible</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ceiling structure</td>
|
||
<td>ceil_struc</td>
|
||
<td>ceil struc</td>
|
||
<td>The construction format of the ceiling, e.g., wood frame, concrete</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ceiling texture</td>
|
||
<td>ceil_texture</td>
|
||
<td>ceil texture</td>
|
||
<td>The feel, appearance, or consistency of a ceiling surface, e.g., crows feet, crows-foot stomp, double skip, hawk and trowel, knockdown, popcorn, orange peel, rosebud stomp, Santa-Fe texture, skip trowel, smooth, stomp knockdown, swirl</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ceiling thermal mass</td>
|
||
<td>ceil_thermal_mass</td>
|
||
<td>ceil thermal mass</td>
|
||
<td>The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ceiling type</td>
|
||
<td>ceil_type</td>
|
||
<td>ceil type</td>
|
||
<td>The type of ceiling according to the ceiling's appearance or construction, e.g., cathedral, dropped, concave, barrel-shaped, coffered, cove, stretched</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>cell line</td>
|
||
<td>cell_line</td>
|
||
<td>cell, <br />cell l ine, <br />cell line specifics, <br />cell line/clone, <br />cell lineage, <br />cell lines, <br />cell loine, <br />celll line, <br />cellline, <br />cells, <br />tissue/cell lines</td>
|
||
<td>Name of the cell line.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>cell subtype</td>
|
||
<td>cell_subtype</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>cell type</td>
|
||
<td>cell_type</td>
|
||
<td>celltype, <br />developmental stage/cell type, <br />disease/cell type, <br />tissue/cell type</td>
|
||
<td>Type of cell of the sample or from which the sample was obtained.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>chemical administration</td>
|
||
<td>chem_administration</td>
|
||
<td>chem administration</td>
|
||
<td>list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v1.72), please see http://bioportal.bioontology.org/visualize/44603</td>
|
||
<td>{term}; {timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>chemical mutagen</td>
|
||
<td>chem_mutagen</td>
|
||
<td>chem mutagen</td>
|
||
<td>treatment involving use of mutagens; should include the name of mutagen, amount administered, treatment duration, interval and total experimental duration; can include multiple mutagen regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>chemical oxygen demand</td>
|
||
<td>chem_oxygen_dem</td>
|
||
<td>chem oxygen dem</td>
|
||
<td>a measure of the relative oxygen-depletion effect of a waste contaminant</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>chemical treatment</td>
|
||
<td>chem_treatment</td>
|
||
<td>chem treatment</td>
|
||
<td>List of chemical compounds administered upstream the sampling location where sampling occurred, e.g., glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals. The commercial name of the product and name of the supplier should be provided. The date of administration should also be included</td>
|
||
<td>{text};{text};{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>chemical treatment method</td>
|
||
<td>chem_treat_method</td>
|
||
<td>chem treat method</td>
|
||
<td>Method of chemical administration, dose, frequency, duration, time elapsed between administration and sampling, e.g., 50 mg/l; twice a week; 1 hr; 0 days</td>
|
||
<td>{float} {unit};{Rn/start_time/end_time/duration};{duration};{duration}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>child of</td>
|
||
<td>child_of</td>
|
||
<td></td>
|
||
<td>indicates parentage; only applicable to sexual organisms, for bacteria use 'derived from'</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>chloride</td>
|
||
<td>chloride</td>
|
||
<td></td>
|
||
<td>concentration of chloride</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>chlorophyll</td>
|
||
<td>chlorophyll</td>
|
||
<td></td>
|
||
<td>concentration of chlorophyll</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>climate environment</td>
|
||
<td>climate_environment</td>
|
||
<td></td>
|
||
<td>treatment involving an exposure to a particular climate; can include multiple climates</td>
|
||
<td>{text};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>clone</td>
|
||
<td>clone</td>
|
||
<td></td>
|
||
<td>Name for the clone or subculture from which the sample was taken.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>clone lib</td>
|
||
<td>clone_lib</td>
|
||
<td></td>
|
||
<td>Formal identifier that points to source institute and clone library identifier.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>collected by</td>
|
||
<td>collected_by</td>
|
||
<td>collectedby</td>
|
||
<td>Name of persons or institute who collected the sample</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>collection date</td>
|
||
<td>collection_date</td>
|
||
<td>colection date, <br />collection date (yyyymmdd), <br />collection year, <br />collectiondate, <br />date of collection, <br />date sample collected, <br />isolation year, <br />sample collection date, <br />sample date, <br />sampling date, <br />time of sample collection, <br />year isolated</td>
|
||
<td>the date on which the sample was collected; date/time ranges are supported by providing two dates from among the supported value formats, delimited by a forward-slash character; collection times are supported by adding "T", then the hour and minute after the date, and must be in Coordinated Universal Time (UTC), otherwise known as "Zulu Time" (Z); supported formats include "DD-Mmm-YYYY", "Mmm-YYYY", "YYYY" or ISO 8601 standard "YYYY-mm-dd", "YYYY-mm", "YYYY-mm-ddThh:mm:ss"; e.g., 30-Oct-1990, Oct-1990, 1990, 1990-10-30, 1990-10, 21-Oct-1952/15-Feb-1953, 2015-10-11T17:53:03Z; valid non-ISO dates will be automatically transformed to ISO format</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>collection device</td>
|
||
<td>collection_device</td>
|
||
<td></td>
|
||
<td>Instrument or container used to collect sample, e.g., swab</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>collection method </td>
|
||
<td>collection_method</td>
|
||
<td>collection method, <br />samp collec method</td>
|
||
<td>Process used to collect the sample, e.g., bronchoalveolar lavage (BAL)</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>collection site geographic feature</td>
|
||
<td>coll_site_geo_feat</td>
|
||
<td>coll site geo feat</td>
|
||
<td>Text or terms that describe the geographic feature where the food sample was obtained by the researcher. This field encourages selected terms listed under the following ontologies: anthropogenic geographic feature (http://purl.obolibrary.org/obo/ENVO_00000002), for example agricultural fairground [ENVO:01000986]; garden [ENVO:00000011} or any of its subclasses; market [ENVO:01000987]; water well [ENVO:01000002]; or human construction (http://purl.obolibrary.org/obo/ENVO_00000070), e.g., grocery store [GENEPIO:0001020]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>component organism</td>
|
||
<td>component_organism</td>
|
||
<td></td>
|
||
<td>a component organism of the mixed sample; use the full taxonomic name, eg, "Bordetella pertussis"</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>compound</td>
|
||
<td>compound</td>
|
||
<td>agent</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>conductivity</td>
|
||
<td>conduc</td>
|
||
<td>conduc</td>
|
||
<td>electrical conductivity of water</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>cooling system identifier</td>
|
||
<td>cool_syst_id</td>
|
||
<td>cool syst id</td>
|
||
<td>The cooling system identifier</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>corrosion rate at sample location</td>
|
||
<td>samp_loc_corr_rate</td>
|
||
<td>samp loc corr rate</td>
|
||
<td>Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays</td>
|
||
<td>{float} - {float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>crop rotation</td>
|
||
<td>crop_rotation</td>
|
||
<td>history/crop rotation</td>
|
||
<td>whether or not crop is rotated, and if yes, rotation schedule</td>
|
||
<td>{boolean};Rn/{timestamp}/{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>crop yield</td>
|
||
<td>crop_yield</td>
|
||
<td></td>
|
||
<td>Amount of crop produced per unit or area of land</td>
|
||
<td>{float}{unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>cultivar</td>
|
||
<td>cultivar</td>
|
||
<td>cultivar acc, <br />cultivar/accession</td>
|
||
<td>cultivar name - cultivated variety of plant</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>culture collection</td>
|
||
<td>culture_collection</td>
|
||
<td>culturecollection</td>
|
||
<td>Name of source institute and unique culture identifier. See the description for the proper format and list of allowed institutes, http://www.insdc.org/controlled-vocabulary-culturecollection-qualifier</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>culture isolation date</td>
|
||
<td>cult_isol_date</td>
|
||
<td>cult isol date</td>
|
||
<td>A culture isolation date is a date-time entity marking the end of a process in which a sample yields a positive result for the target microbial analyte(s) in the form of an isolated colony or colonies, e.g., 5/24/2020</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>culture result</td>
|
||
<td>cult_result</td>
|
||
<td>cult result</td>
|
||
<td>Any result of a bacterial culture experiment reported as a binary assessment, e.g., absent, active, inactive, negative, no, present, positive, yes</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>culture result organism</td>
|
||
<td>cult_result_org</td>
|
||
<td>cult result org</td>
|
||
<td>Taxonomic information about the cultured organism(s)</td>
|
||
<td>{termLabel} {[termID]}|{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>culture rooting medium</td>
|
||
<td>cult_root_med</td>
|
||
<td>cult root med</td>
|
||
<td>Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g., Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors</td>
|
||
<td>{text}|{PMID}|{DOI}|{URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>culture target microbial analyte</td>
|
||
<td>cult_target</td>
|
||
<td>cult target</td>
|
||
<td>The target microbial analyte in terms of investigation scope. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy</td>
|
||
<td>{termLabel} {[termID]}|{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>current land use</td>
|
||
<td>cur_land_use</td>
|
||
<td>cur land use</td>
|
||
<td>present state of sample site</td>
|
||
<td>['', 'cities', 'farmstead', 'industrial areas', 'roads/railroads', 'rock', 'sand', 'gravel', 'mudflats', 'salt flats', 'badlands', 'permanent snow or ice', 'saline seeps', 'mines/quarries', 'oil waste areas', 'small grains', 'row crops', 'vegetable crops', 'horticultural plants (e.g. tulips)', 'marshlands (grass,sedges,rushes)', 'tundra (mosses,lichens)', 'rangeland', 'pastureland (grasslands used for livestock grazing)', 'hayland', 'meadows (grasses,alfalfa,fescue,bromegrass,timothy)', 'shrub land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus)', 'successional shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries)', 'shrub crops (blueberries,nursery ornamentals,filberts)', 'vine crops (grapes)', 'conifers (e.g. pine,spruce,fir,cypress)', 'hardwoods (e.g. oak,hickory,elm,aspen)', 'intermixed hardwood and conifers', 'tropical (e.g. mangrove,palms)', 'rainforest (evergreen forest receiving >406 cm annual rainfall)', 'swamp (permanent or semi-permanent water body dominated by woody plants)', 'crop trees (nuts,fruit,christmas trees,nursery trees)']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>current vegetation</td>
|
||
<td>cur_vegetation</td>
|
||
<td>cur vegetation</td>
|
||
<td>vegetation classification from one or more standard classification systems, or agricultural crop</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>current vegetation method</td>
|
||
<td>cur_vegetation_meth</td>
|
||
<td>cur vegetation meth</td>
|
||
<td>reference or method used in vegetation classification</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>date last rain</td>
|
||
<td>date_last_rain</td>
|
||
<td></td>
|
||
<td>The date of the last time it rained</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>date of SARS-CoV-2 vaccination</td>
|
||
<td>date_of_sars_cov_2_vaccination</td>
|
||
<td>date of sars cov 2 vaccination</td>
|
||
<td>Date of the 1st dose of the SARS-CoV-2 vaccine, e.g., 2021-03-30</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>date of prior SARS-CoV-2 antiviral treatment</td>
|
||
<td>date_of_prior_antiviral_treat</td>
|
||
<td>date of prior antiviral treat, <br />date of prior sars cov 2 antiviral treatment</td>
|
||
<td>Date of the SARS-CoV-2 antiviral treatment, e.g., 2021-03-30</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>date of prior SARS-CoV-2 infection</td>
|
||
<td>date_of_prior_sars_cov_2_infection</td>
|
||
<td>date of prior sars cov 2 infection</td>
|
||
<td>Date of the prior SARS-CoV-2 infection, e.g., 2021-03-30</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>death date</td>
|
||
<td>death_date</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>degree of plant part maturity</td>
|
||
<td>plant_part_maturity</td>
|
||
<td>plant part maturity</td>
|
||
<td>A description of the stage of development of a plant or plant part based on maturity or ripeness. This field accepts terms listed under degree of plant maturity (http://purl.obolibrary.org/obo/FOODON_03530050)</td>
|
||
<td>{term label}{term ID}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>density</td>
|
||
<td>density</td>
|
||
<td></td>
|
||
<td>density of sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>depositional environment</td>
|
||
<td>depos_env</td>
|
||
<td>depos env</td>
|
||
<td>Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment), e.g., continental - alluvial, continental - aeolian, continental - fluvial, continental - lacustrine, transitional - deltaic, transitional - tidal, transitional - lagoonal, transitional - beach, transitional - lake, marine - shallow, marine - deep, marine - reef, other - evaporite, other - glacial, other - volcanic</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>depth</td>
|
||
<td>depth</td>
|
||
<td></td>
|
||
<td>Depth is defined as the vertical distance below surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectivly. Depth can be reported as an interval for subsurface samples.</td>
|
||
<td>{float} m</td>
|
||
</tr>
|
||
<tr>
|
||
<td>depth (TVDSS) of hydrocarbon resource pressure</td>
|
||
<td>tvdss_of_hcr_press</td>
|
||
<td>depth (tvdss) of hydrocarbon resource pressure, <br />tvdss of hcr press</td>
|
||
<td>True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured, e.g., 1578 m</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>depth (TVDSS) of hydrocarbon resource temperature</td>
|
||
<td>tvdss_of_hcr_temp</td>
|
||
<td>depth (tvdss) of hydrocarbon resource temperature, <br />tvdss of hcr temp</td>
|
||
<td>True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured, e.g., 1345 m</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>derived from</td>
|
||
<td>derived_from</td>
|
||
<td></td>
|
||
<td>Indicates when one BioSample was derived from another BioSample. Value should include BioSample accession number(s) (SAMNxxxxxxxx).</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>dermatology disorder</td>
|
||
<td>dermatology_disord</td>
|
||
<td>dermatology disord</td>
|
||
<td>history of dermatology disorders; can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>description</td>
|
||
<td>description</td>
|
||
<td>sample description</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>design, construction, and operation documents</td>
|
||
<td>build_docs</td>
|
||
<td>build docs</td>
|
||
<td>The building design, construction and operation documents, e.g., building information model, commissioning report, complaint logs, contract administration, cost estimate, janitorial schedules or logs, maintenance plans, schedule, sections, shop drawings, submittals, ventilation system, windows</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>development stage</td>
|
||
<td>dev_stage</td>
|
||
<td>dev stage, <br />development point, <br />development stages, <br />developmental point, <br />developmental stage, <br />developmental stages, <br />developmentalstage, <br />tissue/dev stage, <br />tissue/development stage, <br />tissue/developmental stage</td>
|
||
<td>Developmental stage at the time of sampling.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>dew point</td>
|
||
<td>dew_point</td>
|
||
<td></td>
|
||
<td>temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water.</td>
|
||
<td>{float} {unit} [deg C]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>diet</td>
|
||
<td>diet</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>dietary claim or use</td>
|
||
<td>dietary_claim_use</td>
|
||
<td>dietary claim use</td>
|
||
<td>These descriptors are used either for foods intended for special dietary use as defined in 21 CFR 105 or for foods that have special characteristics indicated in the name or labeling. This field accepts terms listed under dietary claim or use (http://purl.obolibrary.org/obo/FOODON_03510023). Multiple terms can be separated by one or more pipes, but please consider limiting this list to the most prominent dietary claim or use</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>diether lipids</td>
|
||
<td>diether_lipids</td>
|
||
<td></td>
|
||
<td>concentration of diether lipids; can include multiple types of diether lipids</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>disease</td>
|
||
<td>disease</td>
|
||
<td>disease stat, <br />disease state, <br />disease status, <br />diseases</td>
|
||
<td>list of diseases diagnosed; can include multiple diagnoses. the value of the field depends on host; for humans the terms should be chosen from DO (Disease Ontology), free text for non-human. For DO terms, please see http://gemina.svn.sourceforge.net/viewvc/gemina/trunk/Gemina/ontologies/gemina_symptom.obo?view=log</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>disease stage</td>
|
||
<td>disease_stage</td>
|
||
<td>diseasestage</td>
|
||
<td>stage of disease at the time of sampling.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>dissolved carbon dioxide</td>
|
||
<td>diss_carb_dioxide</td>
|
||
<td>diss carb dioxide</td>
|
||
<td>concentration of dissolved carbon dioxide</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dissolved hydrogen</td>
|
||
<td>diss_hydrogen</td>
|
||
<td>diss hydrogen</td>
|
||
<td>concentration of dissolved hydrogen</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dissolved inorganic carbon</td>
|
||
<td>diss_inorg_carb</td>
|
||
<td>diss inorg carb</td>
|
||
<td>dissolved inorganic carbon concentration</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dissolved inorganic nitrogen</td>
|
||
<td>diss_inorg_nitro</td>
|
||
<td>diss inorg nitro</td>
|
||
<td>concentration of dissolved inorganic nitrogen</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dissolved inorganic phosphorus</td>
|
||
<td>diss_inorg_phosp</td>
|
||
<td>diss inorg phosp</td>
|
||
<td>concentration of dissolved inorganic phosphorus</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dissolved iron</td>
|
||
<td>diss_iron</td>
|
||
<td>diss iron</td>
|
||
<td>Concentration of dissolved iron in the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dissolved organic carbon</td>
|
||
<td>diss_org_carb</td>
|
||
<td>diss org carb</td>
|
||
<td>concentration of dissolved organic carbon</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dissolved organic nitrogen</td>
|
||
<td>diss_org_nitro</td>
|
||
<td>diss org nitro</td>
|
||
<td>dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dissolved oxygen</td>
|
||
<td>diss_oxygen</td>
|
||
<td>diss oxygen</td>
|
||
<td>concentration of dissolved oxygen</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dissolved oxygen in fluids</td>
|
||
<td>diss_oxygen_fluid</td>
|
||
<td>diss oxygen fluid</td>
|
||
<td>Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity, e.g. Mic</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dominant hand</td>
|
||
<td>dominant_hand</td>
|
||
<td></td>
|
||
<td>dominant hand of the subject</td>
|
||
<td>['', 'left', 'right', 'ambidextrous']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door area or size</td>
|
||
<td>door_size</td>
|
||
<td>door size</td>
|
||
<td>The size of the door</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door condition</td>
|
||
<td>door_cond</td>
|
||
<td>door cond</td>
|
||
<td>The physical condition of the door, e.g., damaged, needs repair, new, rupture, visible wear</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door direction of opening</td>
|
||
<td>door_direct</td>
|
||
<td>door direct</td>
|
||
<td>The direction the door opens, e.g., inward, outward, sideways</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door location</td>
|
||
<td>door_loc</td>
|
||
<td>door loc</td>
|
||
<td>The relative location of the door in the room, e.g., north, south, east, west</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door material</td>
|
||
<td>door_mat</td>
|
||
<td>door mat</td>
|
||
<td>The material the door is composed of, e.g., aluminum, cellular PVC, engineered plastic, fiberboard, fiberglass, metal, thermoplastic alloy, vinyl, wood, wood/plastic composite</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door movement</td>
|
||
<td>door_move</td>
|
||
<td>door move</td>
|
||
<td>The type of movement of the door, e.g., collapsible, folding, revolving, rolling shutter, sliding, swinging</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door signs of water/mold</td>
|
||
<td>door_water_mold</td>
|
||
<td>door water mold</td>
|
||
<td>Signs of the presence of mold or mildew on a door, e.g., presence of mold visible, no presence of mold visible</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door type</td>
|
||
<td>door_type</td>
|
||
<td></td>
|
||
<td>The type of door material, e.g., composite, metal, wooden</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door type, composite</td>
|
||
<td>door_comp_type</td>
|
||
<td>door comp type</td>
|
||
<td>The composite type of the door, e.g., metal covered, revolving, sliding, telescopic</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door type, metal</td>
|
||
<td>door_type_metal</td>
|
||
<td>door type metal</td>
|
||
<td>The type of metal door, e.g., collapsible, corrugated steel, hollow, rolling shutters, steel plate</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>door type, wood</td>
|
||
<td>door_type_wood</td>
|
||
<td>door type wood</td>
|
||
<td>The type of wood door, e.g., bettened and ledged, battened, ledged and braced, battened, ledged and framed, battened, ledged, braced and frame, framed and paneled, glashed or sash, flush, louvered, wire gauged</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dose</td>
|
||
<td>dose</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>douche</td>
|
||
<td>douche</td>
|
||
<td></td>
|
||
<td>date of most recent douche</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>downward PAR</td>
|
||
<td>down_par</td>
|
||
<td>down par, <br />downward par</td>
|
||
<td>visible waveband radiance and irradiance measurements in the water column</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>drainage classification</td>
|
||
<td>drainage_class</td>
|
||
<td>drainage class</td>
|
||
<td>drainage classification from a standard system such as the USDA system</td>
|
||
<td>['', 'very poorly', 'poorly', 'somewhat poorly', 'moderately well', 'well', 'excessively drained']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>drawings</td>
|
||
<td>drawings</td>
|
||
<td></td>
|
||
<td>The buildings architectural drawings, e.g., operation, as built, construction, bid, design, building navigation map, diagram, sketch</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>drug usage</td>
|
||
<td>drug_usage</td>
|
||
<td></td>
|
||
<td>any drug used by subject and the frequency of usage; can include multiple drugs used</td>
|
||
<td>{text};{integer}/[year|month|week|day|hour]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>dry mass</td>
|
||
<td>dry_mass</td>
|
||
<td></td>
|
||
<td>measurement of dry mass</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>duration of association with the host</td>
|
||
<td>association_duration</td>
|
||
<td>association duration</td>
|
||
<td>Time spent in host of the symbiotic organism at the time of sampling; relevant scale depends on symbiotic organism and study</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ecotype</td>
|
||
<td>ecotype</td>
|
||
<td></td>
|
||
<td>a population within a given species displaying genetically based, phenotypic traits that reflect adaptation to a local habitat, e.g., Columbia</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>efficiency percent</td>
|
||
<td>efficiency_percent</td>
|
||
<td></td>
|
||
<td>percentage of volatile solids removed from the anaerobic digestor</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>elevation</td>
|
||
<td>elev</td>
|
||
<td>elev</td>
|
||
<td>The elevation of the sampling site as measured by the vertical distance from mean sea level.</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>elevator count</td>
|
||
<td>elevator</td>
|
||
<td>elevator</td>
|
||
<td>The number of elevators within the built structure</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>emulsions</td>
|
||
<td>emulsions</td>
|
||
<td></td>
|
||
<td>amount or concentration of substances such as paints, adhesives, mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion types</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>encoded traits</td>
|
||
<td>encoded_traits</td>
|
||
<td></td>
|
||
<td>Traits like antibiotic resistance/xenobiotic degration phenotypes/converting phage genes</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>enrichment protocol</td>
|
||
<td>enrichment_protocol</td>
|
||
<td></td>
|
||
<td>The microbiological workflow or protocol followed to test for the presence or enumeration of the target microbial analyte(s). Please provide a PubMed or DOI reference for published protocols</td>
|
||
<td>{text}|{PMID}|{DOI}|{URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>environment adjacent to site</td>
|
||
<td>adjacent_environment</td>
|
||
<td>adjacent environment</td>
|
||
<td>Description of the environmental system or features that are adjacent to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple terms can be separated by pipes</td>
|
||
<td>{termLabel}{[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>environmental feature adjacent water source</td>
|
||
<td>water_source_adjac</td>
|
||
<td>water source adjac</td>
|
||
<td>Description of the environmental features that are adjacent to the farm water source. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple terms can be separated by pipes</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>environmental medium</td>
|
||
<td>env_medium</td>
|
||
<td>env material, <br />env medium, <br />environment (material), <br />environment material, <br />material</td>
|
||
<td>Add terms that identify the material displaced by the entity at time of sampling. Recommend subclasses of environmental material [ENVO:00010483]. Multiple terms can be separated by pipes e.g.: estuarine water [ENVO:01000301]|estuarine mud [ENVO:00002160]
|
||
</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>environmental package</td>
|
||
<td>env_package</td>
|
||
<td>env package</td>
|
||
<td>MIGS/MIMS/MIENS extension for reporting of measurements and observations obtained from one or more of the environments where the sample was obtained. All environmental packages listed here are further defined in separate subtables. By giving the name of the environmental package, a selection of fields can be made from the subtables and can be reported</td>
|
||
<td> 'air', 'host-associated', 'human-associated', 'human-skin', 'human-oral', 'human-gut', 'human-vaginal', 'microbial', 'miscellaneous', 'plant-associated', 'sediment', 'soil', 'wastewater', 'water'</td>
|
||
</tr>
|
||
<tr>
|
||
<td>equipment shared with other farms</td>
|
||
<td>farm_equip_shared</td>
|
||
<td>farm equip shared</td>
|
||
<td>List of planting, growing or harvesting equipment shared with other farms</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>escalator count</td>
|
||
<td>escalator</td>
|
||
<td>escalator</td>
|
||
<td>The number of escalators within the built structure</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>estimated size</td>
|
||
<td>estimated_size</td>
|
||
<td></td>
|
||
<td>Estimated size of genome</td>
|
||
<td>{integer} bp</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ethnicity</td>
|
||
<td>ethnicity</td>
|
||
<td>ihmc ethnicity</td>
|
||
<td>ethnicity of the subject</td>
|
||
<td>{integer|text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ethylbenzene</td>
|
||
<td>ethylbenzene</td>
|
||
<td></td>
|
||
<td>Concentration of ethylbenzene in the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>experimental factor</td>
|
||
<td>experimental_factor</td>
|
||
<td></td>
|
||
<td>Variable aspect of experimental design</td>
|
||
<td>{term|text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>exposed ductwork</td>
|
||
<td>exp_duct</td>
|
||
<td>exp duct</td>
|
||
<td>The amount of exposed ductwork in the room</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>exposed pipes</td>
|
||
<td>exp_pipe</td>
|
||
<td>exp pipe</td>
|
||
<td>The number of exposed pipes in the room</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>exposure event</td>
|
||
<td>exposure_event</td>
|
||
<td></td>
|
||
<td>Event leading to exposure, e.g., mass gathering</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>exterior door count</td>
|
||
<td>ext_door</td>
|
||
<td>ext door</td>
|
||
<td>The number of exterior doors in the built structure</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>extrachromosomal elements</td>
|
||
<td>extrachrom_elements</td>
|
||
<td>extrachrom elements</td>
|
||
<td>Plasmids that have significance phenotypic consequence</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>extreme event</td>
|
||
<td>extreme_event</td>
|
||
<td>history/extreme events</td>
|
||
<td>unusual physical events that may have affected microbial populations</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>extreme salinity</td>
|
||
<td>extreme_salinity</td>
|
||
<td>extreme unusual properties/salinity</td>
|
||
<td>measured salinity</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>extreme weather date</td>
|
||
<td>date_extr_weath</td>
|
||
<td>date extr weath</td>
|
||
<td>Date of unusual weather events that may have affected microbial populations. Multiple terms can be separated by pipes, listed in reverse chronological order</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>extreme weather event</td>
|
||
<td>extr_weather_event</td>
|
||
<td>extr weather event</td>
|
||
<td>Unusual weather events that may have affected microbial populations. Multiple terms can be separated by pipes, listed in reverse chronological order, e.g., hail</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>facility type</td>
|
||
<td>facility_type</td>
|
||
<td></td>
|
||
<td>Establishment details about the type of facility where the sample was taken. This is independent of the specific product(s) within the facility, e.g., manufacturing-processing</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>family id</td>
|
||
<td>family_id</td>
|
||
<td>familyid</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>family role</td>
|
||
<td>family_relationship</td>
|
||
<td>family member, <br />family relationship, <br />familymember, <br />familyrelationship, <br />familyrole, <br />relationship, <br />relationship type, <br />relationshiptype</td>
|
||
<td>relationships to other samples in the same study; can include multiple relationships</td>
|
||
<td>{text};{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>farm equipment sanitization</td>
|
||
<td>farm_equip_san</td>
|
||
<td>farm equip san</td>
|
||
<td>Method used to sanitize growing and harvesting equipment including type and concentration of sanitizing solution and frequency of sanitization</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>farm equipment sanitization frequency</td>
|
||
<td>farm_equip_san_freq</td>
|
||
<td>farm equip san freq</td>
|
||
<td>The number of times farm equipment is cleaned. Frequency of cleaning might be on a daily basis, weekly, monthly, quarterly or annually</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>farm equipment used</td>
|
||
<td>farm_equip</td>
|
||
<td>farm equip</td>
|
||
<td>List of relevant equipment used for planting, fertilization, harvesting, irrigation, land levelling, residue management, weeding or transplanting during the growing season. This field encourages terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416). Multiple terms can be separated by pipes, e.g., combine harvester [AGRO:00000473]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>farm watering water source</td>
|
||
<td>farm_water_source</td>
|
||
<td>farm water source</td>
|
||
<td>Source of water used on the farm for irrigation of crops or watering of livestock, e.g., water well</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fermentation chemical additives</td>
|
||
<td>ferm_chem_add</td>
|
||
<td>ferm chem add</td>
|
||
<td>Any chemicals that are added to the fermentation process to achieve the desired final product</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fermentation chemical additives percentage</td>
|
||
<td>ferm_chem_add_perc</td>
|
||
<td>ferm chem add perc</td>
|
||
<td>The amount of chemical added to the fermentation process</td>
|
||
<td>{float} percentage</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fermentation headspace oxygen</td>
|
||
<td>ferm_headspace_oxy</td>
|
||
<td>ferm headspace oxy</td>
|
||
<td>The amount of headspace oxygen in a fermentation vessel</td>
|
||
<td>{float} percentage</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fermentation medium</td>
|
||
<td>ferm_medium</td>
|
||
<td>ferm medium</td>
|
||
<td>The growth medium used for the fermented food fermentation process, which supplies the required nutrients. Usually this includes a carbon and nitrogen source, water, micronutrients and chemical additives</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fermentation pH</td>
|
||
<td>ferm_ph</td>
|
||
<td>ferm ph, <br />fermentation ph</td>
|
||
<td>The pH of the fermented food fermentation process</td>
|
||
<td>{float}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fermentation relative humidity</td>
|
||
<td>ferm_rel_humidity</td>
|
||
<td>ferm rel humidity</td>
|
||
<td>The relative humidity of the fermented food fermentation process</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fermentation temperature</td>
|
||
<td>ferm_temp</td>
|
||
<td>ferm temp</td>
|
||
<td>The temperature of the fermented food fermentation process</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fermentation time</td>
|
||
<td>ferm_time</td>
|
||
<td>ferm time</td>
|
||
<td>The time duration of the fermented food fermentation process</td>
|
||
<td>duration</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fermentation vessel</td>
|
||
<td>ferm_vessel</td>
|
||
<td>ferm vessel</td>
|
||
<td>The type of vessel used for containment of the fermentation</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fertilizer administration</td>
|
||
<td>fertilizer_admin</td>
|
||
<td>fertilizer admin</td>
|
||
<td>Type of fertilizer or amendment added to the soil or water for the purpose of improving substrate health and quality for plant growth. This field encourages terms listed under agronomic fertilizer (http://purl.obolibrary.org/obo/AGRO_00002062). Multiple terms may apply and can be separated by pipes, listing in reverse chronological order, e.g., fish emulsion [AGRO:00000082]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fertilizer administration date</td>
|
||
<td>fertilizer_date</td>
|
||
<td>fertilizer date</td>
|
||
<td>Date of administration of soil amendment or fertilizer. Multiple terms may apply and can be separated by pipes, listing in reverse chronological order</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fertilizer regimen</td>
|
||
<td>fertilizer_regm</td>
|
||
<td>fertilizer regm</td>
|
||
<td>information about treatment involving the use of fertilizers; should include the name fertilizer, amount administered, treatment duration, interval and total experimental duration; can include multiple fertilizer regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fetal health status</td>
|
||
<td>foetal_health_stat</td>
|
||
<td>amniotic fluid/fetal health status, <br />amniotic fluid/foetal health status, <br />fetal health stat, <br />foetal health stat, <br />foetal health status</td>
|
||
<td>specification of foetal health status, should also include abortion</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>field name</td>
|
||
<td>field</td>
|
||
<td>field</td>
|
||
<td>Name of the hydrocarbon field, e.g., Albacora</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>filter type</td>
|
||
<td>filter_type</td>
|
||
<td></td>
|
||
<td>device which removes solid particulates or airborne molecular contaminants</td>
|
||
<td>['', 'particulate air filter', 'chemical air filter', 'low-MERV pleated media', 'HEPA', 'electrostatic', 'gas-phase or ultraviolet air treatments', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fire</td>
|
||
<td>fire</td>
|
||
<td>history/fire</td>
|
||
<td>historical and/or physical evidence of fire</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fireplace type</td>
|
||
<td>fireplace_type</td>
|
||
<td></td>
|
||
<td>A firebox with chimney, e.g., gas burning, wood burning</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>flooding</td>
|
||
<td>flooding</td>
|
||
<td>history/flooding</td>
|
||
<td>historical and/or physical evidence of flooding</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>floor age</td>
|
||
<td>floor_age</td>
|
||
<td></td>
|
||
<td>The time period since installment of the carpet or flooring</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>floor area</td>
|
||
<td>floor_area</td>
|
||
<td></td>
|
||
<td>The area of the floor space within the room</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>floor condition</td>
|
||
<td>floor_cond</td>
|
||
<td>floor cond</td>
|
||
<td>The physical condition of the floor at the time of sampling, e.g., new, visible wear, needs repair, damaged, rupture</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>floor count</td>
|
||
<td>floor_count</td>
|
||
<td></td>
|
||
<td>The number of floors in the building, including basements and mechanical penthouse</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>floor finish material</td>
|
||
<td>floor_finish_mat</td>
|
||
<td>floor finish mat</td>
|
||
<td>The floor covering type; the finished surface that is walked on, e.g., tile, wood strip or parquet, carpet, rug, laminate wood, lineoleum, vinyl composition tile, sheet vinyl, stone, bamboo, cork, terrazo, concrete, none;specify unfinished, sealed, clear finish, paint</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>floor signs of water/mold</td>
|
||
<td>floor_water_mold</td>
|
||
<td>floor water mold</td>
|
||
<td>Signs of the presence of mold or mildew in a room, e.g., mold odor, wet floor, water stains, wall discoloration, floor discoloration, ceiling discoloration, peeling paint or wallpaper, bulging walls, condensation</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>floor structure</td>
|
||
<td>floor_struc</td>
|
||
<td>floor struc</td>
|
||
<td>Refers to the structural elements and subfloor upon which the finish flooring is installed, e.g., balcony, floating floor, glass floor, raised floor, sprung floor, wood-framed, concrete</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>floor thermal mass</td>
|
||
<td>floor_thermal_mass</td>
|
||
<td></td>
|
||
<td>The ability of the floor to provide inertia against temperature fluctuations</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fluorescence</td>
|
||
<td>fluor</td>
|
||
<td>fluor</td>
|
||
<td>raw or converted fluorescence of water</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food additive</td>
|
||
<td>food_additive</td>
|
||
<td></td>
|
||
<td>A substance or substances added to food to maintain or improve safety and freshness, to improve or maintain nutritional value, or improve taste, texture and appearance. This field encourages terms listed under food additive (http://purl.obolibrary.org/obo/FOODON_03412972). Multiple terms can be separated by one or more pipes, but please consider limiting this list to the top 5 ingredients listed in order as on the food label. See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors, e.g., xanthan gum [FOODON:03413321]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food allergen labeling</td>
|
||
<td>food_allergen_label</td>
|
||
<td>food allergen label</td>
|
||
<td>A label indication that the product contains a recognized allergen. This field accepts terms listed under dietary claim or use (http://purl.obolibrary.org/obo/FOODON_03510213)</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food animal antimicrobial duration</td>
|
||
<td>animal_am_dur</td>
|
||
<td>animal am dur</td>
|
||
<td>The duration of time (days) that the antimicrobial was administered to the food animal</td>
|
||
<td>{float} {day}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food animal antimicrobial frequency</td>
|
||
<td>animal_am_freq</td>
|
||
<td>animal am freq</td>
|
||
<td>The frequency per day that the antimicrobial was adminstered to the food animal</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food animal antimicrobial intended use</td>
|
||
<td>animal_am_use</td>
|
||
<td>animal am use</td>
|
||
<td>The prescribed intended use of or the condition treated by the antimicrobial given to the food animal by any route of administration</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food animal antimicrobial route of administration</td>
|
||
<td>animal_am_route</td>
|
||
<td>animal am route</td>
|
||
<td>The route by which the antimicrobial is adminstered into the body of the food animal</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food animal body condition</td>
|
||
<td>animal_body_cond</td>
|
||
<td>animal body cond</td>
|
||
<td>Body condition scoring is a production management tool used to evaluate overall health and nutritional needs of a food animal, e.g., normal, over conditioned, under conditioned</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food animal group size</td>
|
||
<td>host_group_size</td>
|
||
<td>animal group size, <br />host group size</td>
|
||
<td>The number of food animals of the same species that are maintained together as a unit, i.e. a herd or flock, e.g., 80</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food animal source diet</td>
|
||
<td>animal_diet</td>
|
||
<td>animal diet</td>
|
||
<td>If the isolate is from a food animal, the type of diet eaten by the food animal. Please list the main food staple and the setting, if appropriate. For a list of acceptable animal feed terms or categories, please see http://www.feedipedia.org. Multiple terms may apply and can be separated by pipes. Food product for animal covers foods intended for consumption by domesticated animals. Consult http://purl.obolibrary.org/obo/FOODON_03309997. If the proper descriptor is not listed please use text to describe the food type. Multiple terms can be separated by one or more pipes. If the proper descriptor is not listed please use text to describe the food product type</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food animal source sex category</td>
|
||
<td>animal_sex</td>
|
||
<td>animal sex</td>
|
||
<td>The sex and reproductive status of the food animal, e.g., castrated female, castrated male, intact female, intact male</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food cleaning process </td>
|
||
<td>food_clean_proc</td>
|
||
<td>food clean proc</td>
|
||
<td>The process of cleaning food to separate other environmental materials from the food source. Multiple terms can be separated by pipes, e.g., rinsed with water|scrubbed with brush</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food contact surface</td>
|
||
<td>food_contact_surf</td>
|
||
<td>food contact surf</td>
|
||
<td>The specific container or coating materials in direct contact with the food. Multiple values can be assigned. This field encourages terms listed under food contact surface (http://purl.obolibrary.org/obo/FOODON_03500010), e.g., aluminum surface [FOODON:03500042]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food container or wrapping</td>
|
||
<td>food_contain_wrap</td>
|
||
<td>food contain wrap</td>
|
||
<td>Type of container or wrapping defined by the main container material, the container form, and the material of the liner lids or ends. Also type of container or wrapping by form; prefer description by material first, then by form. This field encourages terms listed under food container or wrapping (http://purl.obolibrary.org/obo/FOODON_03490100), e.g., bottle or jar [FOODON:03490203]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food cooking process</td>
|
||
<td>food_cooking_proc</td>
|
||
<td>food cooking proc</td>
|
||
<td>The transformation of raw food by the application of heat. This field encourages terms listed under food cooking (http://purl.obolibrary.org/obo/FOODON_03450002), e.g., food blanching [FOODON:03470175]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food distribution point geographic location</td>
|
||
<td>food_dis_point</td>
|
||
<td>food dis point</td>
|
||
<td>A reference to a place on the Earth, by its name or by its geographical location that refers to a distribution point along the food chain. This field accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448). Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012</td>
|
||
<td>{term}: {term}, {text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food distribution point geographic location (city)</td>
|
||
<td>food_dis_point_city</td>
|
||
<td>food dis point city</td>
|
||
<td>A reference to a place on the Earth, by its name or by its geographical location that refers to a distribution point along the food chain. This field accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448). Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food ingredient</td>
|
||
<td>food_ingredient</td>
|
||
<td></td>
|
||
<td>In this field, please list individual ingredients for multi-component food [FOODON:00002501] and simple foods that is not captured in food_type. Please use terms that are present in FoodOn. Multiple terms can be separated by one or more pipes, but please consider limiting this list to the top 5 ingredients listed in order as on the food label. See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food package capacity</td>
|
||
<td>food_pack_capacity</td>
|
||
<td>food pack capacity</td>
|
||
<td>The maximum number of product units within a package</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food packing integrity</td>
|
||
<td>food_pack_integrity</td>
|
||
<td>food pack integrity</td>
|
||
<td>A term label and term id to describe the state of the packing material and text to explain the exact condition. This field encourages terms listed under food packing medium integrity (http://purl.obolibrary.org/obo/FOODON_03530218), e.g., food packing medium compromised [FOODON:00002517]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food packing medium</td>
|
||
<td>food_pack_medium</td>
|
||
<td>food pack medium</td>
|
||
<td>The medium in which the food is packed for preservation and handling or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup. The packing medium may provide a controlled environment for the food. It may also serve to improve palatability and consumer appeal. This includes edible packing media (e.g. fruit juice), gas other than air (e.g. carbon dioxide), vacuum packed, or packed with aerosol propellant. This field encourages terms under food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). Multiple terms may apply and can be separated by pipes, e.g., vacuum-packed [FOODON:03480027]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food preservation process</td>
|
||
<td>food_preserv_proc</td>
|
||
<td>food preserv proc</td>
|
||
<td>The methods contributing to the prevention or retardation of microbial, enzymatic or oxidative spoilage and thus to the extension of shelf life. This field encourages terms listed under food preservation process (http://purl.obolibrary.org/obo/FOODON_03470107), e.g., food fermentation [FOODON:00001304]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food processing method</td>
|
||
<td>food_processing_method</td>
|
||
<td></td>
|
||
<td>Methods for processing food, e.g., food (blanched) [FOODON:00002767]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food product by quality</td>
|
||
<td>food_product_qual</td>
|
||
<td>food product qual</td>
|
||
<td>Descriptors for describing food visually or via other senses, which is useful for tasks like food inspection where little prior knowledge of how the food came to be is available. Some terms like "food (frozen)" are both a quality descriptor and the output of a process. This field accepts terms listed under food product by quality (http://purl.obolibrary.org/obo/FOODON_00002454)</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food product name legal status</td>
|
||
<td>food_name_status</td>
|
||
<td>food name status</td>
|
||
<td>A datum indicating that use of a food product name is regulated in some legal jurisdiction. This field accepts terms listed under food product name legal status (http://purl.obolibrary.org/obo/FOODON_03530087)</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food product origin geographic location</td>
|
||
<td>food_origin</td>
|
||
<td>food origin</td>
|
||
<td>A reference to a place on the Earth, by its name or by its geographical location that describes the origin of the food commodity, either in terms of its cultivation or production. This field encourages terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448), e.g., Thailand</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food product synonym</td>
|
||
<td>food_prod_synonym</td>
|
||
<td>food prod synonym</td>
|
||
<td>Other names by which the food product is known by (e.g., regional or non-English names), e.g., pinot gris</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food product type</td>
|
||
<td>food_product_type</td>
|
||
<td></td>
|
||
<td>A food product type is a class of food products that is differentiated by its food composition (e.g., single- or multi-ingredient), processing and/or consumption characteristics. This does not include brand name products but it may include generic food dish categories. This field encourages terms under food product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms related to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997). If the proper descriptor is not listed please use text to describe the food type. Multiple terms can be separated by one or more pipes, e.g., multi-component food product [FOODON:00002501]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food production characteristics</td>
|
||
<td>food_prod_char</td>
|
||
<td>food prod char</td>
|
||
<td>Descriptors of the food production system such as wild caught, free-range, organic, free-range, industrial, dairy, beef</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food production environmental monitoring zone</td>
|
||
<td>env_monitoring_zone</td>
|
||
<td>env monitoring zone</td>
|
||
<td>An environmental monitoring zone is a formal designation as part of an environmental monitoring program, in which areas of a food production facility are categorized, commonly as zones 1-4, based on likelihood or risk of foodborne pathogen contamination. This field accepts entries of zones 1-4, e.g., Zone 1</td>
|
||
<td>['', 'Zone 1', 'Zone 2', 'Zone 3', 'Zone 4', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food production system</td>
|
||
<td>food_prod</td>
|
||
<td>food prod</td>
|
||
<td>Descriptors of the food production system or of the agricultural environment and growing conditions related to the farm production system. This field encourages terms listed under food production (http://purl.obolibrary.org/obo/FOODON_03530206). Multiple terms may apply and can be separated by pipes, e.g., restaurant food preparation process [FOODON:03530110]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food quality date</td>
|
||
<td>food_quality_date</td>
|
||
<td></td>
|
||
<td>The date recommended for the use of the product while at peak quality, this date is not a reflection of safety unless used on infant formula this date is not a reflection of safety and is typically labeled on a food product as ""best if used by,"" best by,"" ""use by,"" or ""freeze by"", e.g., 5/24/2020</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food shipping transportation method</td>
|
||
<td>food_trav_mode</td>
|
||
<td>food trav mode</td>
|
||
<td>A descriptor for the method of movement of food commodity along the food distribution system. This field accepts terms listed under travel mode (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor is not listed please use text to describe the mode of travel. Multiple terms can be separated by one or more pipes</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food shipping transportation vehicle</td>
|
||
<td>food_trav_vehic</td>
|
||
<td>food trav vehic</td>
|
||
<td>A descriptor for the mobile machine which is used to transport food commodities along the food distribution system. This field accepts terms listed under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper descrptor is not listed please use text to describe the mode of travel. Multiple terms can be separated by one or more pipes</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food source</td>
|
||
<td>food_source</td>
|
||
<td></td>
|
||
<td>Individual organism or category of organisms from which the food product or its major ingredient is derived, e.g., giant tiger prawn [FOODON:03412612]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food source age</td>
|
||
<td>food_source_age</td>
|
||
<td></td>
|
||
<td>The age of the food source host organim. Depending on the type of host organism, age may be more appropriate to report in days, weeks, or years</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food stored by consumer (storage duration)</td>
|
||
<td>cons_food_stor_dur</td>
|
||
<td>cons food stor dur</td>
|
||
<td>The storage duration of the food commodity by the consumer, prior to onset of illness or sample collection. Indicate the timepoint written in ISO 8601 format</td>
|
||
<td>{timepoint}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food stored by consumer (storage temperature)</td>
|
||
<td>cons_food_stor_temp</td>
|
||
<td>cons food stor temp</td>
|
||
<td>Temperature at which food commodity was stored by the consumer, prior to onset of illness or sample collection</td>
|
||
<td>{float} {unit}|{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food traceability list category</td>
|
||
<td>food_trace_list</td>
|
||
<td>food trace list</td>
|
||
<td>The FDA is proposing to establish additional traceability recordkeeping requirements (beyond what is already required in existing regulations) for persons who manufacture, process, pack, or hold foods the Agency has designated for inclusion on the Food Traceability List. The Food Traceability List (FTL) identifies the foods for which the additional traceability records described in the proposed rule would be required. The term ""Food Traceability List"" (FTL) refers not only to the foods specifically listed (https://www.fda.gov/media/142303/download), but also to any foods that contain listed foods as ingredients, e.g., tropical tree fruits</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food treatment process</td>
|
||
<td>food_treat_proc</td>
|
||
<td>food treat proc</td>
|
||
<td>Used to specifically characterize a food product based on the treatment or processes applied to the product or any indexed ingredient. The processes include adding, substituting or removing components or modifying the food or component, e.g., through fermentation. Multiple values can be assigned. This fields accepts terms listed under food treatment process (http://purl.obolibrary.org/obo/FOODON_03460111)</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>food type processed in facility</td>
|
||
<td>food_type_processed</td>
|
||
<td>food type processed</td>
|
||
<td>Food type processed in facility, e.g., dairy</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>forma</td>
|
||
<td>forma</td>
|
||
<td></td>
|
||
<td>Taxonomy level below subspecies (or variety in botany). Use is similar to ecotype etc.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>forma specialis</td>
|
||
<td>forma_specialis</td>
|
||
<td></td>
|
||
<td>Usually applied to fungus adapted to a specific host.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>formation water salinity</td>
|
||
<td>hcr_fw_salinity</td>
|
||
<td>hcr fw salinity</td>
|
||
<td>Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>frequency of cleaning</td>
|
||
<td>freq_clean</td>
|
||
<td>freq clean</td>
|
||
<td>The number of times the sample location is cleaned, e.g., daily, weekly, monthly, quarterly, annually</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>frequency of cooking</td>
|
||
<td>freq_cook</td>
|
||
<td>freq cook</td>
|
||
<td>The number of times a meal is cooked per week</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>fungicide regimen</td>
|
||
<td>fungicide_regm</td>
|
||
<td>fungicide regm</td>
|
||
<td>information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment duration, interval and total experimental duration; can include multiple fungicide regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>furniture</td>
|
||
<td>furniture</td>
|
||
<td></td>
|
||
<td>The types of furniture present in the sampled room, e.g., cabinet, chair, desks</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>gap accession</td>
|
||
<td>gap_accession</td>
|
||
<td></td>
|
||
<td>technical dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>gap change status</td>
|
||
<td>gap_change_status</td>
|
||
<td></td>
|
||
<td>technical dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>gap consent code</td>
|
||
<td>gap_consent_code</td>
|
||
<td></td>
|
||
<td>technical dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>gap consent short name</td>
|
||
<td>gap_consent_short_name</td>
|
||
<td></td>
|
||
<td>technical dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>gap sample id</td>
|
||
<td>gap_sample_id</td>
|
||
<td></td>
|
||
<td>technical dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>gap study version</td>
|
||
<td>gap_study_version</td>
|
||
<td></td>
|
||
<td>technical dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>gap subject id</td>
|
||
<td>gap_subject_id</td>
|
||
<td></td>
|
||
<td>technical dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>gaseous environment</td>
|
||
<td>gaseous_environment</td>
|
||
<td></td>
|
||
<td>use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>gaseous substances</td>
|
||
<td>gaseous_substances</td>
|
||
<td></td>
|
||
<td>amount or concentration of substances such as hydrogen sulfide, carbon dioxide, methane, etc.; can include multiple substances</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>gastrointestinal tract disorder</td>
|
||
<td>gastrointest_disord</td>
|
||
<td>gastrointest disord</td>
|
||
<td>history of gastrointestinal tract disorders; can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>gender of restroom</td>
|
||
<td>gender_restroom</td>
|
||
<td>gender restroom</td>
|
||
<td>The gender type of the restroom, e.g., all gender, female, gender neutral, male, male and female, unisex</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>genetic modification</td>
|
||
<td>genetic_mod</td>
|
||
<td>genetic mod</td>
|
||
<td>Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection</td>
|
||
<td>{text}|{PMID}|{DOI}|{URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>genotype</td>
|
||
<td>genotype</td>
|
||
<td>genetic variation, <br />genotype/variation</td>
|
||
<td>observed genotype</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>geo loc exposure</td>
|
||
<td>geo_loc_exposure</td>
|
||
<td></td>
|
||
<td>The country where the host was likely exposed to the causative agent of the illness. This location pertains to the country the host was believed to be exposed, and may not be the same as the host's country of residence, e.g., Canada</td>
|
||
<td>{term}:{term}:{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>geographic location</td>
|
||
<td>geo_loc_name</td>
|
||
<td>country, <br />geo loc name, <br />geographic location (country and/or sea region), <br />geographic location (country and/or sea), <br />geographic location (country and/or sea, region), <br />geographic location (country and/or sea,region), <br />geographic location (country), <br />geographic location (country:region,area), <br />geographic location (locality), <br />geographic location country and or sea, <br />geographic locations, <br />geographic origin, <br />geographical location, <br />geographical location (country:region, location), <br />geolocname</td>
|
||
<td>Geographical origin of the sample; use the appropriate name from this list https://www.insdc.org/submitting-standards/geo_loc_name-qualifier-vocabulary/. Use a colon to separate the country or ocean from more detailed information about the location, eg "Canada: Vancouver" or "Germany: halfway down Zugspitze, Alps"</td>
|
||
<td>{term}:{term}:{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>gestation state</td>
|
||
<td>gestation_state</td>
|
||
<td>amniotic fluid/gestation state</td>
|
||
<td>specification of the gestation state</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>glucosidase activity</td>
|
||
<td>glucosidase_act</td>
|
||
<td>glucosidase act</td>
|
||
<td>measurement of glucosidase activity</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>gravidity</td>
|
||
<td>gravidity</td>
|
||
<td></td>
|
||
<td>whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used</td>
|
||
<td>{boolean};{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>gravity</td>
|
||
<td>gravity</td>
|
||
<td></td>
|
||
<td>information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; can include multiple treatments</td>
|
||
<td>{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>growth facility</td>
|
||
<td>growth_facil</td>
|
||
<td>growth facil</td>
|
||
<td>Type of facility where the sampled plant was grown; controlled vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>growth habit</td>
|
||
<td>growth_habit</td>
|
||
<td></td>
|
||
<td>Characteristic shape, appearance or growth form of a plant species, e.g., erect, semi-erect, spreading, prostrate</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>growth hormone regimen</td>
|
||
<td>growth_hormone_regm</td>
|
||
<td>growth hormone regm</td>
|
||
<td>information about treatment involving use of growth hormones; should include the name of growth hormone, amount administered, treatment duration, interval and total experimental duration; can include multiple growth hormone regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>growth media</td>
|
||
<td>growth_med</td>
|
||
<td>growth med</td>
|
||
<td>information about growth media for growing the plants or tissue cultured samples</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>growth medium</td>
|
||
<td>growth_medium</td>
|
||
<td></td>
|
||
<td>A liquid or gel containing nutrients, salts, and other factors formulated to support the growth of microorganisms, cells, or plants (National Cancer Institute Thesaurus). The name of the medium used to grow the microorganism</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>growth protocol</td>
|
||
<td>growth_protocol</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>gynecological disorder</td>
|
||
<td>gynecologic_disord</td>
|
||
<td>gynecologic disord</td>
|
||
<td>history of gynecological disorders; can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>hallway/corridor count</td>
|
||
<td>hall_count</td>
|
||
<td>hall count</td>
|
||
<td>The total count of hallways and cooridors in the built structure</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>handidness</td>
|
||
<td>handidness</td>
|
||
<td></td>
|
||
<td>The handidness of the individual sampled, e.g., ambidexterity, left handedness, mixed-handedness, right handedness</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>haplotype</td>
|
||
<td>haplotype</td>
|
||
<td></td>
|
||
<td>Name of the haplotype. Primarily used for identification. A combination of alleles at multiple loci on the same chromosome that are closely linked and tend to be inherited as a unit.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>health state</td>
|
||
<td>health_state</td>
|
||
<td>health disease stat, <br />health disease status</td>
|
||
<td>Health or disease status of sample at time of collection</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>heating and cooling system type</td>
|
||
<td>heat_cool_type</td>
|
||
<td>heat cool type</td>
|
||
<td>methods of conditioning or heating a room or building</td>
|
||
<td>['', 'radiant system', 'heat pump', 'forced air system', 'steam forced heat', 'wood stove', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>heating delivery locations</td>
|
||
<td>heat_deliv_loc</td>
|
||
<td>heat deliv loc</td>
|
||
<td>The location of heat delivery within the room, e.g., north, south, east, west</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>heating system delivery method</td>
|
||
<td>heat_sys_deliv_meth</td>
|
||
<td>heat sys deliv meth</td>
|
||
<td>The method by which the heat is delivered through the system, e.g., conductive, radiant</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>heating system identifier</td>
|
||
<td>heat_system_id</td>
|
||
<td>heat system id</td>
|
||
<td>The heating system identifier</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>heavy metals</td>
|
||
<td>heavy_metals</td>
|
||
<td>extreme unusual properties/heavy metals</td>
|
||
<td>heavy metals present and concentrationsany drug used by subject and the frequency of usage; can include multiple heavy metals and concentrations</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>heavy metals method</td>
|
||
<td>heavy_metals_meth</td>
|
||
<td>extreme unusual properties/heavy metals method, <br />heavy metals meth</td>
|
||
<td>reference or method used in determining heavy metals</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>height carpet fiber mat</td>
|
||
<td>height_carper_fiber</td>
|
||
<td>height carper fiber</td>
|
||
<td>The average carpet fiber height in the indoor environment</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>height or length</td>
|
||
<td>height_or_length</td>
|
||
<td></td>
|
||
<td>measurement of height or length</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>herbicide regimen</td>
|
||
<td>herbicide_regm</td>
|
||
<td>herbicide regm</td>
|
||
<td>information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment duration, interval and total experimental duration; can include multiple regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>histological type</td>
|
||
<td>histological_type</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>horizon method</td>
|
||
<td>horizon_meth</td>
|
||
<td>horizon meth</td>
|
||
<td>reference or method used in determining the horizon</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host</td>
|
||
<td>host</td>
|
||
<td>host (scientific name), <br />host name, <br />host organism, <br />host scientific name, <br />host species, <br />host speciess, <br />nat host, <br />nathost, <br />specific host, <br />specifichost</td>
|
||
<td>The natural (as opposed to laboratory) host to the organism from which the sample was obtained. Use the full taxonomic name, eg, "Homo sapiens".</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host HIV status</td>
|
||
<td>host_hiv_stat</td>
|
||
<td>host hiv stat, <br />host hiv status</td>
|
||
<td>HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO]</td>
|
||
<td>{boolean};{boolean}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host age</td>
|
||
<td>host_age</td>
|
||
<td></td>
|
||
<td>Age of host at the time of sampling</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host anatomical material</td>
|
||
<td>host_anatomical_material</td>
|
||
<td></td>
|
||
<td>Host anatomical material or substance produced by the body where the sample was obtained, e.g., stool, mucus, saliva</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host anatomical part</td>
|
||
<td>host_anatomical_part</td>
|
||
<td></td>
|
||
<td>Anatomical part of the host organism (e.g. tissue) that was sampled, e.g., nasopharynx</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host animal breed</td>
|
||
<td>host_animal_breed</td>
|
||
<td></td>
|
||
<td>The animal breed of the host organism. Used mainly for animal hosts, e.g., duroc, angus, mixed breed</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host blood pressure diastolic</td>
|
||
<td>host_blood_press_diast</td>
|
||
<td>host blood press diast</td>
|
||
<td>resting diastolic blood pressureof the host, measured as mm mercury</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host blood pressure systolic</td>
|
||
<td>host_blood_press_syst</td>
|
||
<td>host blood press syst, <br />host blood press systolic</td>
|
||
<td>resting systolic blood pressure of the host, measured as mm mercury</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host body habitat</td>
|
||
<td>host_body_habitat</td>
|
||
<td></td>
|
||
<td>original body habitat where the sample was obtained from</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host body mass index</td>
|
||
<td>host_body_mass_index</td>
|
||
<td>host bmi</td>
|
||
<td>body mass index of the host, calculated as weight/(height)squared</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host body product</td>
|
||
<td>host_body_product</td>
|
||
<td></td>
|
||
<td>substance produced by the host, e.g. stool, mucus, where the sample was obtained from</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host body temperature</td>
|
||
<td>host_body_temp</td>
|
||
<td>host body temp</td>
|
||
<td>core body temperature of the host when sample was collected</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host cellular location</td>
|
||
<td>host_cellular_loc</td>
|
||
<td>host cellular loc</td>
|
||
<td>The localization of the symbiotic host organism within the host from which it was sampled, e.g., intracellular, extracellular</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host color</td>
|
||
<td>host_color</td>
|
||
<td></td>
|
||
<td>the color of host</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host common name</td>
|
||
<td>host_common_name</td>
|
||
<td></td>
|
||
<td>The natural language (non-taxonomic) name of the host organism, e.g., mouse</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host dependence</td>
|
||
<td>host_dependence</td>
|
||
<td></td>
|
||
<td>Type of host dependence for the symbiotic host organism to its host., e.g., facultative, obligate</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host description</td>
|
||
<td>host_description</td>
|
||
<td></td>
|
||
<td>Additional information not included in other defined vocabulary fields</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host diet</td>
|
||
<td>host_diet</td>
|
||
<td></td>
|
||
<td>type of diet depending on the sample for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host disease</td>
|
||
<td>host_disease</td>
|
||
<td>host disease stat</td>
|
||
<td>Name of relevant disease, e.g. Salmonella gastroenteritis. Controlled vocabulary, http://bioportal.bioontology.org/ontologies/1009 or http://www.ncbi.nlm.nih.gov/mesh</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host disease outcome</td>
|
||
<td>host_disease_outcome</td>
|
||
<td></td>
|
||
<td>Final outcome of disease, e.g., death, chronic disease, recovery</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host disease stage</td>
|
||
<td>host_disease_stage</td>
|
||
<td></td>
|
||
<td>Stage of disease at the time of sampling</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host dry mass</td>
|
||
<td>host_dry_mass</td>
|
||
<td></td>
|
||
<td>measurement of dry mass</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host family relationship</td>
|
||
<td>host_family_relationship</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host genotype</td>
|
||
<td>host_genotype</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host growth conditions</td>
|
||
<td>host_growth_cond</td>
|
||
<td>host growth cond</td>
|
||
<td>literature reference giving growth conditions of the host</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host health state</td>
|
||
<td>host_health_state</td>
|
||
<td>host status</td>
|
||
<td>Information regarding health state of the individual sampled at the time of sampling</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host height</td>
|
||
<td>host_height</td>
|
||
<td></td>
|
||
<td>the height of subject</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host infra specific name</td>
|
||
<td>host_infra_specific_name</td>
|
||
<td></td>
|
||
<td>taxonomic information subspecies level</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host infra specific rank</td>
|
||
<td>host_infra_specific_rank</td>
|
||
<td></td>
|
||
<td>taxonomic rank information below subspecies level, such as variety, form, rank etc.</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host last meal</td>
|
||
<td>host_last_meal</td>
|
||
<td></td>
|
||
<td>content of last meal and time since feeding; can include multiple values</td>
|
||
<td>{text};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host length</td>
|
||
<td>host_length</td>
|
||
<td></td>
|
||
<td>the length of subject</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host life stage</td>
|
||
<td>host_life_stage</td>
|
||
<td></td>
|
||
<td>description of host life stage</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host number individual</td>
|
||
<td>host_number</td>
|
||
<td>host number</td>
|
||
<td>Number of symbiotic host individuals pooled at the time of collection</td>
|
||
<td>{float} m</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host occupation</td>
|
||
<td>host_occupation</td>
|
||
<td></td>
|
||
<td>most frequent job performed by subject</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiont role</td>
|
||
<td>symbiont_host_role</td>
|
||
<td>symbiont host role</td>
|
||
<td>Role of the host in the life cycle of the symbiotic organism, e.g., accidental, dead-end, definitive, intermediate, paratenic, reservoir, single host</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host common name</td>
|
||
<td>host_of_host_name</td>
|
||
<td>host of host name</td>
|
||
<td>Common name of the host of the symbiotic host organism</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host disease status</td>
|
||
<td>host_of_host_disease</td>
|
||
<td>host of host disease</td>
|
||
<td>List of diseases with which the host of the symbiotic host organism has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text</td>
|
||
<td>{termLabel} {[termID]}|{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host environemental medium</td>
|
||
<td>host_of_host_env_med</td>
|
||
<td>host of host env med</td>
|
||
<td>Report the environmental material(s) immediately surrounding the symbiotic host organism at the time of sampling. This usually will be a tissue or substance type from the host, but may be another material if the symbiont is external to the host. We recommend using classes from the UBERON ontology, but subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483) may also be used. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.
|
||
Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g., air, water, blood) and not discrete, countable entities (e.g., intestines, heart)</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host family relationship</td>
|
||
<td>host_of_host_fam_rel</td>
|
||
<td>host of host fam rel</td>
|
||
<td>Familial relationship of the host of the symbiotic host organisms to other hosts of symbiotic host organism in the same study; can include multiple relationships</td>
|
||
<td>{text};{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host genotype</td>
|
||
<td>host_of_host_geno</td>
|
||
<td>host of host geno</td>
|
||
<td>Observed genotype of the host of the symbiotic host organism</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host gravidity</td>
|
||
<td>host_of_host_gravid</td>
|
||
<td>host of host gravid</td>
|
||
<td>Whether or not the host of the symbiotic host organism is gravid, and if yes date due or date post-conception, specifying which is used</td>
|
||
<td>{boolean};{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host infra-specific name</td>
|
||
<td>host_of_host_infname</td>
|
||
<td>host of host infname, <br />host of the symbiotic host infra specific name</td>
|
||
<td>Taxonomic name information of the host of the symbiotic host organism below subspecies level</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host infra-specific rank</td>
|
||
<td>host_of_host_infrank</td>
|
||
<td>host of host infrank, <br />host of the symbiotic host infra specific rank</td>
|
||
<td>Taxonomic rank information about the host of the symbiotic host organism below subspecies level, such as variety, form, rank</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host local environmental context</td>
|
||
<td>host_of_host_env_loc</td>
|
||
<td>host of host env loc</td>
|
||
<td>For a symbiotic host organism the local anatomical environment within its host may have causal influences. Report the anatomical entity(s) which are in the direct environment of the symbiotic host organism being sampled and which you believe have significant causal influences on your sample or specimen. For example, if the symbiotic host organism being sampled is an intestinal worm, its local environmental context will be the term for intestine from UBERON (http://uberon.github.io/)</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host phenotype</td>
|
||
<td>host_of_host_pheno</td>
|
||
<td>host of host pheno</td>
|
||
<td>Phenotype of the host of the symbiotic host organism. For phenotypic quality ontology (PATO) terms, see http://purl.bioontology.org/ontology/pato</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host subject id</td>
|
||
<td>host_of_host_sub_id</td>
|
||
<td>host of host sub id</td>
|
||
<td>A unique identifier by which each host of the symbiotic host organism subject can be referred to, de-identified, e.g. #H14</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host taxon id</td>
|
||
<td>host_of_host_taxid</td>
|
||
<td>host of host taxid</td>
|
||
<td>NCBI taxon id of the host of the symbiotic host organism</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host of the symbiotic host total mass</td>
|
||
<td>host_of_host_totmass</td>
|
||
<td>host of host totmass</td>
|
||
<td>Total mass of the host of the symbiotic host organism at collection, the unit depends on the host</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host phenotype</td>
|
||
<td>host_phenotype</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host pulse</td>
|
||
<td>host_pulse</td>
|
||
<td></td>
|
||
<td>resting pulse of the host, measured as beats per minute</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host recent travel location</td>
|
||
<td>host_recent_travel_loc</td>
|
||
<td>host recent travel loc</td>
|
||
<td>The name of the country that was the destination of most recent travel. Specify the countries (and more granular locations if known) travelled, e.g., United Kingdom. Can include multiple travels; separate multiple travel events with a semicolon.</td>
|
||
<td>{term}:{term}:{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host recent travel return date</td>
|
||
<td>host_recent_travel_return_date</td>
|
||
<td></td>
|
||
<td>The date of a person's most recent return to some residence from a journey originating at that residence, e.g., 2021-03-30</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host sex</td>
|
||
<td>host_sex</td>
|
||
<td>host gender</td>
|
||
<td>Gender or physical sex of the host</td>
|
||
<td>['', 'male', 'female', 'pooled male and female', 'neuter', 'hermaphrodite', 'intersex', 'not determined', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host shape</td>
|
||
<td>host_shape</td>
|
||
<td></td>
|
||
<td>morphological shape of host</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host specificity</td>
|
||
<td>host_specificity</td>
|
||
<td></td>
|
||
<td>Level of specificity of symbiont-host interaction, e.g., family-specific, generalist, genus-specific, species-specific</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host specimen voucher</td>
|
||
<td>host_specimen_voucher</td>
|
||
<td></td>
|
||
<td>Identifier for the physical specimen. Include a URI (Uniform Resource Identifier) in the form of a URL providing a direct link to the physical host specimen. If the specimen was destroyed in the process of analysis, electronic images (e-vouchers) are an adequate substitute for a physical host voucher specimen. If a URI is not available, a museum-provided globally unique identifier (GUID) can be used. URI example: http://portal.vertnet.org/o/fmnh/mammals?id=33e55cfe-330b-40d9-aaae-8d042cba7542; INSDC triplet example: UAM:Mamm:52179</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host subject id</td>
|
||
<td>host_subject_id</td>
|
||
<td></td>
|
||
<td>a unique identifier by which each subject can be referred to, de-identified, e.g. #131</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host subspecific genetic lineage</td>
|
||
<td>host_subspecf_genlin</td>
|
||
<td>host subspecf genlin</td>
|
||
<td>Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123</td>
|
||
<td>{rank name}:{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host substrate</td>
|
||
<td>host_substrate</td>
|
||
<td></td>
|
||
<td>the growth substrate of the host</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host taxonomy ID</td>
|
||
<td>host_taxid</td>
|
||
<td>host id, <br />host ids, <br />host spec range, <br />host specificity or range, <br />host tax id, <br />host taxid, <br />host taxon id, <br />host taxonomy id</td>
|
||
<td>NCBI taxonomy ID of the host, e.g. 9606</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host tissue sampled</td>
|
||
<td>host_tissue_sampled</td>
|
||
<td>host body site</td>
|
||
<td>name of body site where the sample was obtained from, such as a specific organ or tissue, e.g., tongue, lung. For foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms, please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>host total mass</td>
|
||
<td>host_tot_mass</td>
|
||
<td>host tot mass</td>
|
||
<td>total mass of the host at collection, the unit depends on host</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host variety or cultivar</td>
|
||
<td>host_variety</td>
|
||
<td>host variety</td>
|
||
<td>The variety or cultivar of the host organism; the name given to a particular variety of organism to distinguish it from otherwise similar organisms of the same species, e.g., romaine lettuce; Athena melons; Patio Snacker cucumbers</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>host wet mass</td>
|
||
<td>host_wet_mass</td>
|
||
<td></td>
|
||
<td>measurement of wet mass</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>hrt</td>
|
||
<td>hrt</td>
|
||
<td></td>
|
||
<td>whether subject had hormone replacement theraphy, and if yes start date</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>humidity</td>
|
||
<td>humidity</td>
|
||
<td></td>
|
||
<td>amount of water vapour in the air, at the time of sampling</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>humidity regimen</td>
|
||
<td>humidity_regm</td>
|
||
<td>humidity regm</td>
|
||
<td>information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment duration, interval and total experimental duration; can include multiple regimens</td>
|
||
<td>{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>hydrocarbon resource geological age</td>
|
||
<td>hcr_geol_age</td>
|
||
<td>hcr geol age</td>
|
||
<td>Geological age of hydrocarbon resource (additional info: https://en.wikipedia.org/wiki/Period_(geology)), e.g., archean, cambrian, carboniferous, cenozoic, cretaceous, devonian, jurassic, mesozoic, neogene, ordovician, paleogene, paleozoic, permian, precambrian, proterozoic, silurian, triassic</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>hydrocarbon resource original pressure</td>
|
||
<td>hcr_pressure</td>
|
||
<td>hcr pressure</td>
|
||
<td>Original pressure of the hydrocarbon resource</td>
|
||
<td>{float} - {float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>hydrocarbon resource original temperature</td>
|
||
<td>hcr_temp</td>
|
||
<td>hcr temp</td>
|
||
<td>Original temperature of the hydrocarbon resource</td>
|
||
<td>{float} - {float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>hydrocarbon resource type</td>
|
||
<td>hcr</td>
|
||
<td>hcr</td>
|
||
<td>Main hydrocarbon resource type. The term Hydrocarbon Resource is defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation, e.g., oil reservoir, gas reservoir, oil sand, coalbed, shale, tight oil reservoir, tight gas reservoir</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>hydrocarbon type produced</td>
|
||
<td>hc_produced</td>
|
||
<td>hc produced</td>
|
||
<td>Main hydrocarbon type produced from resource, e.g., oil, gas-condensate, gas, bitumen, coalbed methane</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>hygienic food production area</td>
|
||
<td>hygienic_area</td>
|
||
<td>hygienic area</td>
|
||
<td>The subdivision of areas within a food production facility according to hygienic requirements. This field accepts terms listed under hygienic food production area (http://purl.obolibrary.org/obo/ENVO). Please add a term that most accurately indicates the hygienic area your sample was taken from according to the definitions provided</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>hysterectomy</td>
|
||
<td>hysterectomy</td>
|
||
<td></td>
|
||
<td>specification of whether hysterectomy was performed</td>
|
||
<td>{boolean}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>identified by</td>
|
||
<td>identified_by</td>
|
||
<td></td>
|
||
<td>name of the taxonomist who identified the specimen</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>image file</td>
|
||
<td>image_file</td>
|
||
<td></td>
|
||
<td>technical dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>indoor sampling surface or structure subpart</td>
|
||
<td>indoor_surf_subpart</td>
|
||
<td>indoor surf subpart</td>
|
||
<td>The subpart of the object(s) that was swabbed, like a cart, drain, counter, etc., e.g., wheel</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>indoor space</td>
|
||
<td>indoor_space</td>
|
||
<td></td>
|
||
<td>a distinguishable space within a structure, the purpose for which discrete areas of a building is used</td>
|
||
<td>['', 'bedroom', 'office', 'bathroom', 'foyer', 'kitchen', 'locker room', 'hallway', 'elevator', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>indoor surface</td>
|
||
<td>indoor_surf</td>
|
||
<td>indoor surf</td>
|
||
<td>type of indoor surface</td>
|
||
<td>['', 'counter top', 'window', 'wall', 'cabinet', 'ceiling', 'door', 'shelving', 'vent cover', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>industrial effluent percent</td>
|
||
<td>indust_eff_percent</td>
|
||
<td>indust eff percent</td>
|
||
<td>percentage of industrial effluents received by wastewater treatment plant</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>infra specific name</td>
|
||
<td>infra_specific_name</td>
|
||
<td></td>
|
||
<td>taxonomic information subspecies level</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>infra specific rank</td>
|
||
<td>infra_specific_rank</td>
|
||
<td></td>
|
||
<td>taxonomic rank information below subspecies level, such as variety, form, rank etc.</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>injection water breakthrough date of specific well</td>
|
||
<td>iw_bt_date_well</td>
|
||
<td>iw bt date well</td>
|
||
<td>Injection water breakthrough date per well following a secondary and/or tertiary recovery</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>injection water fraction</td>
|
||
<td>iwf</td>
|
||
<td>iwf</td>
|
||
<td>Proportion of the produced fluids derived from injected water at the time of sampling, e.g., 87%</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>inorganic particles</td>
|
||
<td>inorg_particles</td>
|
||
<td>inorg particles</td>
|
||
<td>concentration of particles such as sand, grit, metal particles, ceramics, etc.; can include multiple particles</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>inside lux light</td>
|
||
<td>inside_lux</td>
|
||
<td>inside lux</td>
|
||
<td>The recorded value at sampling time (power density)</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>intended consumer</td>
|
||
<td>intended_consumer</td>
|
||
<td></td>
|
||
<td>Food consumer type, human or animal, for which the food product is produced and marketed, e.g., human</td>
|
||
<td>['', 'human as food consumer', 'animal as food consumer', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>interior wall condition</td>
|
||
<td>int_wall_cond</td>
|
||
<td>int wall cond</td>
|
||
<td>The physical condition of the wall at the time of sampling, e.g., new, visible wear, needs repair, damaged, rupture</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>investigation type</td>
|
||
<td>investigation_type</td>
|
||
<td></td>
|
||
<td>Nucleic Acid Sequence Report is the root element of all MIGS/MIMS compliant reports as standardized by Genomic Standards Consortium. This field is either eukaryote,bacteria,virus,plasmid,organelle, metagenome, miens-survey or miens-culture</td>
|
||
<td>['', 'eukaryote', 'bacteria_archaea', 'plasmid', 'virus', 'organelle', 'metagenome', 'miens-survey', 'miens-culture']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>is tumor</td>
|
||
<td>is_tumor</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>isolate</td>
|
||
<td>isolate</td>
|
||
<td>isolate name</td>
|
||
<td>identification or description of the specific individual from which this sample was obtained</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>isolate name alias</td>
|
||
<td>isolate_name_alias</td>
|
||
<td>strain name alias</td>
|
||
<td>Other IDs associated with this isolate or strain. Separate with '; ' if more than one</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>isolation and growth condition</td>
|
||
<td>isol_growth_condt</td>
|
||
<td>isol growth condt</td>
|
||
<td>PMID or url for isolation and growth condition specifications</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>isolation source</td>
|
||
<td>isolation_source</td>
|
||
<td>isolate source, <br />isolationsource, <br />source of isolate</td>
|
||
<td>Describes the physical, environmental and/or local geographical source of the biological sample from which the sample was derived.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>karyotype</td>
|
||
<td>karyotype</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>kidney disorder</td>
|
||
<td>kidney_disord</td>
|
||
<td>kidney disord</td>
|
||
<td>history of kidney disorders; can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>lab host</td>
|
||
<td>lab_host</td>
|
||
<td>labhost</td>
|
||
<td>Scientific name and description of the laboratory host used to propagate the source organism or material from which the sample was obtained, e.g., Escherichia coli DH5a, or Homo sapiens HeLa cells</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>label</td>
|
||
<td>label</td>
|
||
<td></td>
|
||
<td>a label for sample, or name of an individual animal (e.g., Clint)</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>labeling claims</td>
|
||
<td>label_claims</td>
|
||
<td>label claims</td>
|
||
<td>Descriptors of the food production system such as wild caught, free-range, organic, free-range, industrial, hormone-free, antibiotic free, cage free, e.g., wild caught</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>last meal</td>
|
||
<td>last_meal</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>last time swept/mopped/vacuumed</td>
|
||
<td>last_clean</td>
|
||
<td>last clean</td>
|
||
<td>The last time the floor was cleaned (swept, mopped, vacuumed)</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>latitude and longitude</td>
|
||
<td>lat_lon</td>
|
||
<td>geographic location (latitude and longitude), <br />geographic location (latitude, longitude), <br />geographical location (lat lon), <br />geographical location (longitude and longitude), <br />lat lon, <br />latlon</td>
|
||
<td>The geographical coordinates of the location where the sample was collected. Specify as degrees latitude and longitude in format "d[d.dddd] N|S d[dd.dddd] W|E", eg, 38.98 N 77.11 W</td>
|
||
<td>{float} {float}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>life stage</td>
|
||
<td>life_stage</td>
|
||
<td></td>
|
||
<td>description of life stage</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>light intensity</td>
|
||
<td>light_intensity</td>
|
||
<td></td>
|
||
<td>measurement of light intensity</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>light regimen</td>
|
||
<td>light_regm</td>
|
||
<td>light regm</td>
|
||
<td>Information about treatment(s) involving exposure to light, including both light intensity and quality</td>
|
||
<td>{text};{float} {unit};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>light type</td>
|
||
<td>light_type</td>
|
||
<td></td>
|
||
<td>application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light</td>
|
||
<td>['', 'natural light', 'electric light', 'no light', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>link to classification information</td>
|
||
<td>link_class_info</td>
|
||
<td>link class info</td>
|
||
<td>link to digitized soil maps or other soil classification information</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>link to climate information</td>
|
||
<td>link_climate_info</td>
|
||
<td>link climate info</td>
|
||
<td>link to climate resource</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>links to additional analysis</td>
|
||
<td>link_addit_analys</td>
|
||
<td>link addit analys</td>
|
||
<td></td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>lithology</td>
|
||
<td>lithology</td>
|
||
<td></td>
|
||
<td>Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination), e.g., basement, chalk, chert, coal, conglomerate, diatomite, dolomite, limestone, sandstone, shale, siltstone, volcanic</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>liver disorder</td>
|
||
<td>liver_disord</td>
|
||
<td>liver disord</td>
|
||
<td>history of liver disorders; can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>local air flow impediments</td>
|
||
<td>air_flow_impede</td>
|
||
<td>air flow impede</td>
|
||
<td>Presence of objects in the area that would influence or impede air flow through the air filter, e.g., obstructed, unobstructed</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>local classification</td>
|
||
<td>local_class</td>
|
||
<td>local class, <br />soil taxonomic/local classification</td>
|
||
<td>soil classification based on local soil classification system</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>local classification method</td>
|
||
<td>local_class_meth</td>
|
||
<td>local class meth, <br />soil taxonomic/local classification method</td>
|
||
<td>reference or method used in determining the local soil classification</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>local-scale environmental context</td>
|
||
<td>env_local_scale</td>
|
||
<td>env feature, <br />env local range, <br />env local scale, <br />environment (feature), <br />environment feature, <br />feature, <br />local scale environmental context</td>
|
||
<td>Add terms that identify environmental entities having causal influences upon the entity at time of sampling, multiple terms can be separated by pipes, e.g.: shoreline [ENVO:00000486]|intertidal zone [ENVO:00000316]
|
||
</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>location or room in facility</td>
|
||
<td>location_in_facility</td>
|
||
<td>location in facility</td>
|
||
<td>Name of the location or room in the facility where the sampling occurred, e.g., ripening room</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>lot number</td>
|
||
<td>lot_number</td>
|
||
<td>batch number</td>
|
||
<td>A distinctive alpha-numeric identification code assigned by the manufacturer or distributor to a specific quantity of manufactured material or product within a batch. The submitter should provide lot number of the item followed by the item name for which the lot number was provided</td>
|
||
<td>{integer}, {text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>magnesium</td>
|
||
<td>magnesium</td>
|
||
<td></td>
|
||
<td>concentration of magnesium</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>major diet change in last six months</td>
|
||
<td>diet_last_six_month</td>
|
||
<td>diet last six month</td>
|
||
<td>specification of major diet changes in the last six months, if yes the change should be specified</td>
|
||
<td>{boolean};{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>material condition</td>
|
||
<td>material_condition</td>
|
||
<td></td>
|
||
<td>Condition of material sampled, e.g., rusted</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>material of contact prior to food packaging</td>
|
||
<td>food_prior_contact</td>
|
||
<td>food prior contact</td>
|
||
<td>The material the food contacted (e.g., was processed in) prior to packaging. This field accepts terms listed under material of contact prior to food packaging (http://purl.obolibrary.org/obo/FOODON_03530077). If the proper descriptor is not listed please use text to describe the material of contact prior to food packaging</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>maternal health status</td>
|
||
<td>maternal_health_stat</td>
|
||
<td>amniotic fluid/maternal health status, <br />maternal health stat</td>
|
||
<td>specification of the maternal health status</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mating type</td>
|
||
<td>mating_type</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>maximum occupancy</td>
|
||
<td>max_occup</td>
|
||
<td>max occup</td>
|
||
<td>The maximum amount of people allowed in the indoor environment</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mean annual precipitation</td>
|
||
<td>annual_precpt</td>
|
||
<td>annual precpt</td>
|
||
<td>The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mean annual temperature</td>
|
||
<td>annual_temp</td>
|
||
<td>annual temp</td>
|
||
<td>Mean annual temperature</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mean friction velocity</td>
|
||
<td>mean_frict_vel</td>
|
||
<td>mean frict vel</td>
|
||
<td>measurement of mean friction velocity</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mean peak friction velocity</td>
|
||
<td>mean_peak_frict_vel</td>
|
||
<td>mean peak frict vel</td>
|
||
<td>measurement of mean peak friction velocity</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mean seasonal humidity</td>
|
||
<td>season_humidity</td>
|
||
<td>season humidity</td>
|
||
<td>Average humidity of the region throughout the growing season</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mean seasonal precipitation</td>
|
||
<td>season_precpt</td>
|
||
<td>season precpt</td>
|
||
<td>The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mean seasonal temperature</td>
|
||
<td>season_temp</td>
|
||
<td>season temp</td>
|
||
<td>Mean seasonal temperature</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mechanical damage</td>
|
||
<td>mechanical_damage</td>
|
||
<td></td>
|
||
<td>information about any mechanical damage exerted on the plant; can include multiple damages and sites</td>
|
||
<td>{text};{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mechanical structure</td>
|
||
<td>mech_struc</td>
|
||
<td>mech struc</td>
|
||
<td>Mechanical structure: a moving structure, e.g., subway, coach, carriage, elevator, escalator, boat, train, car, bus</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>medical history performed</td>
|
||
<td>medic_hist_perform</td>
|
||
<td>medic hist perform</td>
|
||
<td>whether full medical history was collected</td>
|
||
<td>{boolean}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>medication code</td>
|
||
<td>ihmc_medication_code</td>
|
||
<td>ihmc medication code</td>
|
||
<td>can include multiple medication codes</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>menarche</td>
|
||
<td>menarche</td>
|
||
<td></td>
|
||
<td>date of most recent menstruation</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>menopause</td>
|
||
<td>menopause</td>
|
||
<td></td>
|
||
<td>date of onset of menopause</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>metagenome source</td>
|
||
<td>metagenome_source</td>
|
||
<td></td>
|
||
<td>describes the original source of a metagenome assembled genome (MAG). Examples: soil metagenome, gut metagenome</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>methane</td>
|
||
<td>methane</td>
|
||
<td></td>
|
||
<td>methane (gas) amount or concentration at the time of sampling</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>microbial biomass</td>
|
||
<td>microbial_biomass</td>
|
||
<td></td>
|
||
<td>the part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 µm. IF you keep this, you would need to have correction factors used for conversion to the final units, which should be mg C (or N)/kg soil).</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>microbial biomass method</td>
|
||
<td>microbial_biomass_meth</td>
|
||
<td>microbial biomass meth</td>
|
||
<td>reference or method used in determining microbial biomass</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>microbial starter</td>
|
||
<td>microb_start</td>
|
||
<td>microb start</td>
|
||
<td>Any type of microorganisms used in food production. This field accepts terms listed under live organisms for food production (http://purl.obolibrary.org/obo/FOODON_0344453)</td>
|
||
<td>{term label} {[termID]}|{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>microbial starter NCBI taxonomy ID</td>
|
||
<td>microb_start_taxid</td>
|
||
<td>microb start taxid, <br />microbial starter ncbi taxonomy id</td>
|
||
<td>Please include Genus species and strain ID, if known of microorganisms used in food production. For complex communities, pipes can be used to separate two or more microbes</td>
|
||
<td>{termLabel} {[termID]}|{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>microbial starter inoculation</td>
|
||
<td>microb_start_inoc</td>
|
||
<td>microb start inoc</td>
|
||
<td>The amount of starter culture used to inoculate a new batch</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>microbial starter organism count</td>
|
||
<td>microb_start_count</td>
|
||
<td>microb start count</td>
|
||
<td>Total cell count of starter culture per gram, volume or area of sample and the method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should also be provided, e.g., total prokaryotes; 3.5e7 cells per ml; qPCR</td>
|
||
<td>{text};{float} {unit};[ATP|MPN|qPCR|spread plate|other]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>microbial starter preparation</td>
|
||
<td>microb_start_prep</td>
|
||
<td>microb start prep</td>
|
||
<td>Information about the protocol or method used to prepare the starter inoculum</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>microbial starter source</td>
|
||
<td>microb_start_source</td>
|
||
<td>microb start source</td>
|
||
<td>The source from which the microbial starter culture was sourced. If commercially supplied, list supplier</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>microbiological culture medium</td>
|
||
<td>microb_cult_med</td>
|
||
<td>microb cult med</td>
|
||
<td>A culture medium used to select for, grow, and maintain prokaryotic microorganisms. Can be in either liquid (broth) or solidified (e.g. with agar) forms. This field accepts terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is not listed please use text to describe the culture medium</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mineral nutrient regimen</td>
|
||
<td>mineral_nutr_regm</td>
|
||
<td>mineral nutr regm</td>
|
||
<td>information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment duration, interval and total experimental duration; can include multiple mineral nutrient regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>miscellaneous parameter</td>
|
||
<td>misc_param</td>
|
||
<td>misc param</td>
|
||
<td>any other measurement performed or parameter collected, that is not listed here</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>mode of transmission</td>
|
||
<td>mode_transmission</td>
|
||
<td>mode transmission</td>
|
||
<td>The process through which the symbiotic host organism entered the host from which it was sampled, e.g., horizontal:castrator, horizontal:directly transmitted, horizontal:micropredator, horizontal:parasitoid, horizontal:trophically transmitted, horizontal:vector transmitted, vertical</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>molecular data type</td>
|
||
<td>molecular_data_type</td>
|
||
<td></td>
|
||
<td>Type of molecular (omics) data tied to this sample</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>morphology</td>
|
||
<td>morphology</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>n alkanes</td>
|
||
<td>n_alkanes</td>
|
||
<td></td>
|
||
<td>concentration of n-alkanes; can include multiple n-alkanes</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>negative control type</td>
|
||
<td>neg_cont_type</td>
|
||
<td>neg cont type</td>
|
||
<td>The substance or equipment used as a negative control in an investigation, e.g., distilled water, phosphate buffer, empty collection device, empty collection tube, DNA-free PCR mix, sterile swab, sterile syringe</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>nitrate</td>
|
||
<td>nitrate</td>
|
||
<td></td>
|
||
<td>concentration of nitrate</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>nitrite</td>
|
||
<td>nitrite</td>
|
||
<td></td>
|
||
<td>concentration of nitrite</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>nitrogen</td>
|
||
<td>nitro</td>
|
||
<td>nitro</td>
|
||
<td>concentration of nitrogen (total)</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>non mineral nutrient regimen</td>
|
||
<td>non_mineral_nutr_regm</td>
|
||
<td>non mineral nutr regm</td>
|
||
<td>information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment duration, interval and total experimental duration; can include multiple non-mineral nutrient regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>nose throat disorder</td>
|
||
<td>nose_throat_disord</td>
|
||
<td>nose throat disord</td>
|
||
<td>history of nose-throat disorders; can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>nose/mouth/teeth/throat disorder</td>
|
||
<td>nose_mouth_teeth_throat_disord</td>
|
||
<td>nose mouth teeth throat disord</td>
|
||
<td>history of nose/mouth/teeth/throat disorders; can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>number of houseplants</td>
|
||
<td>number_plants</td>
|
||
<td>number plants</td>
|
||
<td>The number of plant(s) in the sampling space</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>number of pets</td>
|
||
<td>number_pets</td>
|
||
<td>number pets</td>
|
||
<td>The number of pets residing in the sampled space</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>number of replicons</td>
|
||
<td>num_replicons</td>
|
||
<td>num replicons</td>
|
||
<td>Number of replicons in nuclear genome</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>number of residents</td>
|
||
<td>number_resident</td>
|
||
<td>number resident</td>
|
||
<td>The number of individuals currently occupying in the sampling location</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>number of samples collected</td>
|
||
<td>num_samp_collect</td>
|
||
<td>num samp collect</td>
|
||
<td>The number of samples collected during the current sampling event</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>observed biotic relationship</td>
|
||
<td>biotic_relationship</td>
|
||
<td>biotic relationship</td>
|
||
<td>Free-living or from host (define relationship)</td>
|
||
<td>['', 'free living', 'parasite', 'commensal', 'symbiont']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>observed coinfecting organisms in host of host</td>
|
||
<td>host_of_host_coinf</td>
|
||
<td>host of host coinf</td>
|
||
<td>The taxonomic name of any coinfecting organism observed in a symbiotic relationship with the host of the sampled host organism, e.g. where a sample collected from a host trematode species (A) which was collected from a host_of_host fish (B) that was also infected with a nematode (C), the value here would be (C) the nematode {species name} or {common name}. Multiple co-infecting species may be added in a comma-separated list. For listing symbiotic organisms associated with the host (A) use the term Observed host symbiont</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>observed host symbionts</td>
|
||
<td>host_symbiont</td>
|
||
<td>host symbiont</td>
|
||
<td>The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>occupancy at sampling</td>
|
||
<td>occup_samp</td>
|
||
<td>occup samp</td>
|
||
<td>number of occupants present at time of sample within the given space</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>occupancy documentation</td>
|
||
<td>occup_document</td>
|
||
<td>occup document</td>
|
||
<td>The type of documentation of occupancy, e.g., automated count, estimate, manual count, videos</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>occupant density at sampling</td>
|
||
<td>occupant_dens_samp</td>
|
||
<td>occupant dens samp</td>
|
||
<td>average number of occupants at time of sampling per square footage</td>
|
||
<td>{float}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>occupation</td>
|
||
<td>occupation</td>
|
||
<td></td>
|
||
<td>most frequent job performed by subject</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>oil water contact depth</td>
|
||
<td>owc_tvdss</td>
|
||
<td>owc tvdss</td>
|
||
<td>Depth of the original oil water contact (OWC) zone (average) (m TVDSS)</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>organic carbon</td>
|
||
<td>org_carb</td>
|
||
<td>org carb</td>
|
||
<td>concentration of organic carbon</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>organic matter</td>
|
||
<td>org_matter</td>
|
||
<td>org matter</td>
|
||
<td>concentration of organic matter</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>organic nitrogen</td>
|
||
<td>org_nitro</td>
|
||
<td>org nitro</td>
|
||
<td>concentration of organic nitrogen</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>organic particles</td>
|
||
<td>org_particles</td>
|
||
<td>org particles</td>
|
||
<td>concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc.</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>organism count</td>
|
||
<td>organism_count</td>
|
||
<td></td>
|
||
<td>total count of any organism per gram or volume of sample,should include name of organism followed by count; can include multiple organism counts</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>organism count qPCR information</td>
|
||
<td>org_count_qpcr_info</td>
|
||
<td>org count qpcr info, <br />organism count qpcr information</td>
|
||
<td>If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided, e.g., 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>organism modifier note</td>
|
||
<td>orgmod_note</td>
|
||
<td>orgmod note</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>orientations of exterior wall</td>
|
||
<td>ext_wall_orient</td>
|
||
<td>ext wall orient</td>
|
||
<td>The orientation of the exterior wall, e.g., north, south, east, west, northeast, southeast, southwest, northwest</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>orientations of exterior window</td>
|
||
<td>ext_window_orient</td>
|
||
<td>ext window orient</td>
|
||
<td>The compass direction the exterior window of the room is facing, e.g., north, south, east, west, northeast, southeast, southwest, northwest</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>original subject id</td>
|
||
<td>original_subject_id</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>outbreak</td>
|
||
<td>outbreak</td>
|
||
<td></td>
|
||
<td>Submitter designated name for an occurrence of more cases of disease than expected in a given area or among a specific group of people over a particular period of time.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>outside relative humidity</td>
|
||
<td>rel_humidity_out</td>
|
||
<td>rel humidity out</td>
|
||
<td>The recorded outside relative humidity value at the time of sampling</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>oxygen</td>
|
||
<td>oxygen</td>
|
||
<td></td>
|
||
<td>oxygen (gas) amount or concentration at the time of sampling</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>oxygenation status of sample</td>
|
||
<td>oxy_stat_samp</td>
|
||
<td>oxy stat samp</td>
|
||
<td>oxygenation status of sample</td>
|
||
<td>['', 'aerobic', 'anaerobic']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pH</td>
|
||
<td>ph</td>
|
||
<td>ph</td>
|
||
<td>pH measurement</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pH method</td>
|
||
<td>ph_meth</td>
|
||
<td>ph meth, <br />ph method</td>
|
||
<td>reference or method used in determining pH</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pH regimen</td>
|
||
<td>ph_regm</td>
|
||
<td>ph regimen, <br />ph regm</td>
|
||
<td>information about treatment involving exposure of plants to varying levels of pH of the growth media; can include multiple regimen</td>
|
||
<td>{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>part of plant or animal</td>
|
||
<td>part_plant_animal</td>
|
||
<td>part plant animal</td>
|
||
<td>The anatomical part of the organism being involved in food production or consumption; e.g., a carrot is the root of the plant (root vegetable). This field accepts terms listed under part of plant or animal (http://purl.obolibrary.org/obo/FOODON_03420116)</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>particle classification</td>
|
||
<td>particle_class</td>
|
||
<td>particle class</td>
|
||
<td>particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>particulate organic carbon</td>
|
||
<td>part_org_carb</td>
|
||
<td>part org carb</td>
|
||
<td>concentration of particulate organic carbon</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>particulate organic nitrogen</td>
|
||
<td>part_org_nitro</td>
|
||
<td>part org nitro</td>
|
||
<td>concentration of particulate organic nitrogen</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>passage history</td>
|
||
<td>passage_history</td>
|
||
<td></td>
|
||
<td>Number of passages and passage method</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>passage method</td>
|
||
<td>passage_method</td>
|
||
<td></td>
|
||
<td>Description of how the organism was passaged. Provide a short description, e.g., AVL buffer+30%EtOH lysate received from Respiratory Lab. P3 passage in Vero-1 via bioreactor large-scale batch passage. P3 batch derived from the SP-2/reference lab strain. If not passaged, put ""not applicable"".</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>passage number</td>
|
||
<td>passage_number</td>
|
||
<td></td>
|
||
<td>The number of known passages, e.g., 3. If not passaged, put ""not applicable"".</td>
|
||
<td>{integer}{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pathogenicity</td>
|
||
<td>pathogenicity</td>
|
||
<td>known pathogenicity</td>
|
||
<td>To what is the entity pathogenic</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pathotype</td>
|
||
<td>pathotype</td>
|
||
<td></td>
|
||
<td>Some bacterial specific pathotypes (example Eschericia coli - STEC, UPEC)</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>pathovar</td>
|
||
<td>pathovar</td>
|
||
<td></td>
|
||
<td>Taxonomy below subspecies; a variety (in bacteria, fungi or virus) usually based on its pathogenic properties. Sometimes used as equivalent to subspecies.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>permeability</td>
|
||
<td>permeability</td>
|
||
<td></td>
|
||
<td>Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences)</td>
|
||
<td>{integer} - {integer} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>perturbation</td>
|
||
<td>perturbation</td>
|
||
<td></td>
|
||
<td>type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types</td>
|
||
<td>{text};{interval}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pesticide regimen</td>
|
||
<td>pesticide_regm</td>
|
||
<td>pesticide regm</td>
|
||
<td>information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment duration, interval and total experimental duration; can include multiple pesticide regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>petroleum hydrocarbon</td>
|
||
<td>petroleum_hydrocarb</td>
|
||
<td>petroleum hydrocarb</td>
|
||
<td>concentration of petroleum hydrocarbon</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>phaeopigments</td>
|
||
<td>phaeopigments</td>
|
||
<td></td>
|
||
<td>concentration of phaeopigments; can include multiple phaeopigments</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>phenotype</td>
|
||
<td>phenotype</td>
|
||
<td></td>
|
||
<td>Phenotype of sampled organism. For Phenotypic quality Ontology (PATO) (v1.269) terms, please see http://bioportal.bioontology.org/visualize/44601</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>phosphate</td>
|
||
<td>phosphate</td>
|
||
<td></td>
|
||
<td>concentration of phosphate</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>phospholipid fatty acid</td>
|
||
<td>phosplipid_fatt_acid</td>
|
||
<td>phosplipid fatt acid</td>
|
||
<td>concentration of phospholipid fatty acids; can include multiple values</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>photon flux</td>
|
||
<td>photon_flux</td>
|
||
<td></td>
|
||
<td>measurement of photon flux</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>photosynthetic activity</td>
|
||
<td>photosynt_activ</td>
|
||
<td>photosynt activ</td>
|
||
<td>Measurement of photosythetic activity (i.e. leaf gas exchange / chlorophyll fluorescence emissions / reflectance / transpiration) Please also include the term method term detailing the method of activity measurement</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>photosynthetic activity method</td>
|
||
<td>photosynt_activ_meth</td>
|
||
<td>photosynt activ meth</td>
|
||
<td>Reference or method used in measurement of photosythetic activity</td>
|
||
<td>{text}|{PMID}|{DOI}|{URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>plant body site</td>
|
||
<td>plant_body_site</td>
|
||
<td></td>
|
||
<td>name of body site that the sample was obtained from. For Plant Ontology (PO) (v 20) terms, see http://purl.bioontology.org/ontology/PO</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>plant growth medium </td>
|
||
<td>plant_growth_med</td>
|
||
<td>plant growth med</td>
|
||
<td>Type of the media used for growing sampled plants, e.g., soil [ENVO:00001998]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>plant product</td>
|
||
<td>plant_product</td>
|
||
<td></td>
|
||
<td>substance produced by the plant, where the sample was obtained from</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>plant reproductive part</td>
|
||
<td>plant_reprod_crop</td>
|
||
<td>plant reprod crop</td>
|
||
<td>Plant reproductive part used in the field during planting to start the crop, e.g., plant cutting, pregerminated seed, ratoon, seed, seedling, whole mature plant</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>plant sex</td>
|
||
<td>plant_sex</td>
|
||
<td></td>
|
||
<td>Sex of the reproductive parts on the whole plant, e.g., androdioecious, androecious, androgynous, androgynomonoecious, andromonoecious, bisexual, dichogamous, diclinous, dioecious, gynodioecious, gynoecious, gynomonoecious, hermaphroditic, imperfect, monoclinous, monoecious, perfect, polygamodioecious, polygamomonoecious, polygamous, protandrous, protogynous, subandroecious, subdioecious, subgynoecious, synoecious, trimonoecious, trioecious, unisexual</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>plant structure</td>
|
||
<td>plant_struc</td>
|
||
<td>plant struc</td>
|
||
<td>Name of plant structure the sample was obtained from; for Plant Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g., petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>plant water delivery method</td>
|
||
<td>plant_water_method</td>
|
||
<td>plant water method</td>
|
||
<td>Description of the equipment or method used to distribute water to crops. This field encourages terms listed under irrigation process (http://purl.obolibrary.org/obo/AGRO_00000006). Multiple terms can be separated by pipes, e.g., drip irrigation process [AGRO:00000056]</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ploidy</td>
|
||
<td>ploidy</td>
|
||
<td></td>
|
||
<td>Ploidy level of genome (eg., haploid, diploid)</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pollutants</td>
|
||
<td>pollutants</td>
|
||
<td></td>
|
||
<td>pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pooling of DNA extracts</td>
|
||
<td>pool_dna_extracts</td>
|
||
<td>pool dna extracts, <br />pooling of dna extracts, <br />pooling of dna extracts (if done)</td>
|
||
<td>were multiple DNA extractions mixed? how many?</td>
|
||
<td>{boolean};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>population</td>
|
||
<td>population</td>
|
||
<td></td>
|
||
<td>for human: ; for plants: filial generation, number of progeny, genetic structure</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>porosity</td>
|
||
<td>porosity</td>
|
||
<td></td>
|
||
<td>porosity of deposited sediment is volume of voids divided by the total volume of sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>positive control type</td>
|
||
<td>pos_cont_type</td>
|
||
<td>pos cont type</td>
|
||
<td>The substance, mixture, product, or apparatus used to verify that a process which is part of an investigation delivers a true positive
|
||
</td>
|
||
<td>{term} or {text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>potassium</td>
|
||
<td>potassium</td>
|
||
<td></td>
|
||
<td>concentration of potassium</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pour point</td>
|
||
<td>pour_point</td>
|
||
<td></td>
|
||
<td>Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high pour point is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material (source: https://en.wikipedia.org/wiki/pour_point)</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pregnancy</td>
|
||
<td>pregnancy</td>
|
||
<td></td>
|
||
<td>date due of pregnancy</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>presence of pets or farm animals</td>
|
||
<td>pet_farm_animal</td>
|
||
<td>pet farm animal</td>
|
||
<td>specification of presence of pets or farm animals in the environment of subject, if yes the animals should be specified; can include multiple animals present</td>
|
||
<td>{boolean};{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>presence of pets, animals, or insects</td>
|
||
<td>pres_animal_insect</td>
|
||
<td>pres animal insect</td>
|
||
<td>The type and number of animals or insects present in the sampling space, e.g., cat 10, dog 2, rodent 100, snake 1</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>preservative added to sample</td>
|
||
<td>samp_preserv</td>
|
||
<td>samp preserv</td>
|
||
<td>Preservative added to the sample, e.g. Rnalater, alcohol, formaldehyde. Where appropriate include volume added, e.g. Rnalater; 2 ml</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pressure</td>
|
||
<td>pressure</td>
|
||
<td></td>
|
||
<td>pressure to which the sample is subject, in atmospheres</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pretreatment</td>
|
||
<td>pre_treatment</td>
|
||
<td>pre treatment</td>
|
||
<td>the process of pre-treatment removes materials that can be easily collected from the raw wastewater</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>previous land use</td>
|
||
<td>previous_land_use</td>
|
||
<td>history/previous land use</td>
|
||
<td>previous land use and dates</td>
|
||
<td>{text};{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>previous land use method</td>
|
||
<td>previous_land_use_meth</td>
|
||
<td>history/previous land use method, <br />previous land use meth</td>
|
||
<td>reference or method used in determining previous land use and dates</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>primary production</td>
|
||
<td>primary_prod</td>
|
||
<td>primary prod</td>
|
||
<td>measurement of primary production</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>primary treatment</td>
|
||
<td>primary_treatment</td>
|
||
<td></td>
|
||
<td>the process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>prior SARS-CoV-2 antiviral treatment</td>
|
||
<td>prior_sars_cov_2_antiviral_treat</td>
|
||
<td>prior sars cov 2 antiviral treat, <br />prior sars cov 2 antiviral treatment</td>
|
||
<td>Has the host received SARS-CoV-2 antiviral treatment?</td>
|
||
<td>['', 'no', 'yes']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>prior SARS-CoV-2 infection</td>
|
||
<td>prior_sars_cov_2_infection</td>
|
||
<td>prior sars cov 2 infection</td>
|
||
<td>Did the host have a prior SARS-CoV-2 infection?</td>
|
||
<td>['', 'no', 'yes']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>prior SARS-CoV-2 vaccination</td>
|
||
<td>prior_sars_cov_2_vaccination</td>
|
||
<td>prior sars cov 2 vaccination</td>
|
||
<td>Has the host received a SARS-CoV-2 vaccination? </td>
|
||
<td>['', 'no', 'yes - completed', 'yes - partially completed']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>production labeling claims</td>
|
||
<td>prod_label_claims</td>
|
||
<td>prod label claims</td>
|
||
<td>Labeling claims containing descriptors such as wild caught, free-range, organic, free-range, industrial, hormone-free, antibiotic free, cage free</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>production rate</td>
|
||
<td>prod_rate</td>
|
||
<td>prod rate</td>
|
||
<td>Oil and/or gas production rates per well, e.g., 524 m3/day</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>production start date</td>
|
||
<td>prod_start_date</td>
|
||
<td>prod start date</td>
|
||
<td>Date of field's first production</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>profile position</td>
|
||
<td>profile_position</td>
|
||
<td></td>
|
||
<td>cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas</td>
|
||
<td>['', 'summit', 'shoulder', 'backslope', 'footslope', 'toeslope']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>project name</td>
|
||
<td>project_name</td>
|
||
<td></td>
|
||
<td>A concise name that describes the overall project, for example "Analysis of sequences collected from Antarctic soil"</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>propagation</td>
|
||
<td>propagation</td>
|
||
<td></td>
|
||
<td>phage: lytic/lysogenic/temperate/obligately lytic; plasmid: incompatibility group; eukaryote: asexual/sexual</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pulmonary disorder</td>
|
||
<td>pulmonary_disord</td>
|
||
<td>pulmonary disord</td>
|
||
<td>history of pulmonary disorders; can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>pulse</td>
|
||
<td>pulse</td>
|
||
<td></td>
|
||
<td>resting pulse, measured as beats per minute</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>purchase date</td>
|
||
<td>cons_purch_date</td>
|
||
<td>cons purch date</td>
|
||
<td>The date a food product was purchased by consumer</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>purpose of sampling</td>
|
||
<td>purpose_of_sampling</td>
|
||
<td>samp purpose, <br />sample purpose</td>
|
||
<td>the reason that the sample was collected, e.g., active surveillance in response to an outbreak, active surveillance not initiated by an outbreak, clinical trial, cluster investigation, environmental assessment, farm sample, field trial, for cause, industry internal investigation, market sample, passive surveillance, population based studies, research, research and development</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>purpose of sequencing</td>
|
||
<td>purpose_of_sequencing</td>
|
||
<td>purpose of seq</td>
|
||
<td>The reason the sample was sequenced, e.g., baseline surveillance (random sampling)</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>purpose of wastewater sampling</td>
|
||
<td>purpose_of_ww_sampling</td>
|
||
<td>purpose of ww sampling</td>
|
||
<td>The reason the sample was collected</td>
|
||
<td>['', 'public health surveillance community-level', 'public health surveillance institution-level', 'public health surveillance building-level', 'research', 'other', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>purpose of wastewater sequencing</td>
|
||
<td>purpose_of_ww_sequencing</td>
|
||
<td>purpose of ww sequencing</td>
|
||
<td>The reason the sample was sequenced, e.g., identification of mutations within a specific region, presence of clinically known mutations, or diversity of mutations across entire genome</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>quadrant position</td>
|
||
<td>quad_pos</td>
|
||
<td>quad pos</td>
|
||
<td>The quadrant position of the sampling room within the building, e.g., north side, west side, south side, east side</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>quantity purchased</td>
|
||
<td>cons_qty_purchased</td>
|
||
<td>cons qty purchased</td>
|
||
<td>The quantity of food purchased by consumer</td>
|
||
<td>{integer} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>race</td>
|
||
<td>race</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>radiation regimen</td>
|
||
<td>radiation_regm</td>
|
||
<td>radiation regm</td>
|
||
<td>information about treatment involving exposure of plant or a plant part to a particular radiation regimen; should include the radiation type, amount or intensity administered, treatment duration, interval and total experimental duration; can include multiple radiation regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rainfall regimen</td>
|
||
<td>rainfall_regm</td>
|
||
<td>rainfall regm</td>
|
||
<td>information about treatment involving an exposure to a given amount of rainfall; can include multiple regimens</td>
|
||
<td>{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>reactor type</td>
|
||
<td>reactor_type</td>
|
||
<td></td>
|
||
<td>anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>redox potential</td>
|
||
<td>redox_potential</td>
|
||
<td></td>
|
||
<td>redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>reference for biomaterial</td>
|
||
<td>ref_biomaterial</td>
|
||
<td>ref biomaterial</td>
|
||
<td>Primary publication or genome report</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>reference material</td>
|
||
<td>reference_material</td>
|
||
<td></td>
|
||
<td>Indicates that a standards body or external group asserts this sample is reference material, eg, 'NIST reference material for genome sequencing validation'.</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>relationship to oxygen</td>
|
||
<td>rel_to_oxygen</td>
|
||
<td>rel to oxygen</td>
|
||
<td>Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic are valid descriptors for microbial environments, eg, aerobe, anaerobe, facultative, microaerophilic, microanaerobe, obligate aerobe, obligate anaerobe, missing, not applicable, not collected, not provided, restricted access</td>
|
||
<td>['', 'aerobe', 'anaerobe', 'facultative', 'microaerophilic', 'microanaerobe', 'obligate aerobe', 'obligate anaerobe', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>relative air humidity</td>
|
||
<td>rel_air_humidity</td>
|
||
<td>rel air humidity</td>
|
||
<td>partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air</td>
|
||
<td>{float} {unit} [%]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>relative location of sample</td>
|
||
<td>rel_location</td>
|
||
<td>rel location, <br />soil rel location</td>
|
||
<td>Location of sample to other parts of the farm, e.g. under crop plant, near irrigation ditch, from the dirt road, from air above crops, nearby river, e.g., furrow</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>relative sampling location</td>
|
||
<td>rel_samp_loc</td>
|
||
<td>rel samp loc</td>
|
||
<td>The sampling location within the train car, e.g., edge of car, center of car, under a seat</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>repository</td>
|
||
<td>repository</td>
|
||
<td></td>
|
||
<td>the name of the institution where the sample or DNA extract is held or "sample not available" if the sample was used in its entirety for analysis or otherwise not retained</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>reservoir name</td>
|
||
<td>reservoir_name</td>
|
||
<td></td>
|
||
<td>Name of the reservoir, e.g., Carapebus</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>resins wt%</td>
|
||
<td>resins_pc</td>
|
||
<td>resins pc</td>
|
||
<td>Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>risk group</td>
|
||
<td>risk_group</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>room air exchange rate</td>
|
||
<td>room_air_exch_rate</td>
|
||
<td>room air exch rate</td>
|
||
<td>The rate at which outside air replaces indoor air in a given space</td>
|
||
<td>measurement value</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room architectural elements</td>
|
||
<td>room_architec_elem</td>
|
||
<td>room architec elem</td>
|
||
<td>The unique details and component parts that, together, form the architecture of a distinguisahable space within a built structure</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room condition</td>
|
||
<td>room_condt</td>
|
||
<td>room condt</td>
|
||
<td>The condition of the room at the time of sampling, e.g., new, visible wear, needs repair, damaged, rupture, visible signs of mold/mildew</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room count</td>
|
||
<td>room_count</td>
|
||
<td></td>
|
||
<td>The total count of rooms in the built structure including all room types</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room dimensions</td>
|
||
<td>room_dim</td>
|
||
<td>room dim</td>
|
||
<td>The length, width and height of sampling room</td>
|
||
<td>{integer} {unit} x {integer} {unit} x {integer} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room door distance</td>
|
||
<td>room_door_dist</td>
|
||
<td>room door dist</td>
|
||
<td>Distance between doors (meters) in the hallway between the sampling room and adjacent rooms</td>
|
||
<td>{integer} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room location in building</td>
|
||
<td>room_loc</td>
|
||
<td>room loc</td>
|
||
<td>The position of the room within the building, e.g., corner room, interior room, exterior wall</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room moisture damage or mold history</td>
|
||
<td>room_moist_dam_hist</td>
|
||
<td>room moist dam hist</td>
|
||
<td>The history of moisture damage or mold in the past 12 months. Number of events of moisture damage or mold observed</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room net area</td>
|
||
<td>room_net_area</td>
|
||
<td></td>
|
||
<td>The net floor area of sampling room. Net area excludes wall thicknesses</td>
|
||
<td>{integer} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room occupancy</td>
|
||
<td>room_occup</td>
|
||
<td>room occup</td>
|
||
<td>Count of room occupancy at time of sampling</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room sampling position</td>
|
||
<td>room_samp_pos</td>
|
||
<td>room samp pos</td>
|
||
<td>The horizontal sampling position in the room relative to architectural elements, e.g., north corner, south corner, west corner, east corner, northeast corner, northwest corner, southeast corner, southwest corner, center</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room type</td>
|
||
<td>room_type</td>
|
||
<td></td>
|
||
<td>The main purpose or activity of the sampling room. A room is any distinguishable space within a structure, e.g., attic, bathroom, closet, conference room, elevator, examining room, hallway, kitchen, mail room, private office, open office, stairwell,restroom, lobby, vestibule, mechanical or electrical room, data center, laboratory_wet, laboratory_dry, gymnasium, natatorium, auditorium, lockers, cafe, warehouse</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room volume</td>
|
||
<td>room_vol</td>
|
||
<td>room vol</td>
|
||
<td>Volume of sampling room</td>
|
||
<td>{integer} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>room window count</td>
|
||
<td>room_window_count</td>
|
||
<td></td>
|
||
<td>Number of windows in the room</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooms connected by a doorway</td>
|
||
<td>room_connected</td>
|
||
<td>room connected</td>
|
||
<td>List of rooms connected to the sampling room by a doorway, e.g., attic, bathroom, closet, conference room, elevator, examining room, hallway, kitchen, mail room, office, stairwell</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooms that are on the same hallway</td>
|
||
<td>room_hallway</td>
|
||
<td>room hallway</td>
|
||
<td>List of room(s) (room number, room name) located in the same hallway as sampling room</td>
|
||
<td>{text};{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooms that share a door with sampling room</td>
|
||
<td>room_door_share</td>
|
||
<td>room door share</td>
|
||
<td>List of room(s) (room number, room name) sharing a door with the sampling room</td>
|
||
<td>{text};{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooms that share a wall with sampling room</td>
|
||
<td>room_wall_share</td>
|
||
<td>room wall share</td>
|
||
<td>List of room(s) (room number, room name) sharing a wall with the sampling room</td>
|
||
<td>{text};{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooting conditions</td>
|
||
<td>root_cond</td>
|
||
<td>root cond</td>
|
||
<td>Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container</td>
|
||
<td>{text}|{PMID}|{DOI}|{URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooting medium carbon</td>
|
||
<td>root_med_carbon</td>
|
||
<td>root med carbon</td>
|
||
<td>Source of organic carbon in the culture rooting medium, e.g., sucrose</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooting medium macronutrients</td>
|
||
<td>root_med_macronutr</td>
|
||
<td>root med macronutr</td>
|
||
<td>Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S), e.g., KH2PO4 (170mg/L)</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooting medium micronutrients</td>
|
||
<td>root_med_micronutr</td>
|
||
<td>root med micronutr</td>
|
||
<td>Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo), e.g., H3BO3 (6.2mg/L)</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooting medium organic supplements</td>
|
||
<td>root_med_suppl</td>
|
||
<td>root med suppl</td>
|
||
<td>Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics activated charcoal, e.g., nicotinic acid (0.5 mg/L)</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooting medium pH</td>
|
||
<td>root_med_ph</td>
|
||
<td>root med ph, <br />rooting medium ph</td>
|
||
<td>pH measurement of the culture rooting medium, e.g., 5.5</td>
|
||
<td>{float}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooting medium regulators</td>
|
||
<td>root_med_regl</td>
|
||
<td>root med regl</td>
|
||
<td>Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid, e.g., 0.5 mg/L NAA</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>rooting medium solidifier</td>
|
||
<td>root_med_solid</td>
|
||
<td>root med solid</td>
|
||
<td>Specification of the solidifying agent in the culture rooting medium, e.g., agar</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>route of transmission</td>
|
||
<td>route_transmission</td>
|
||
<td>route transmission</td>
|
||
<td>Description of path taken by the symbiotic host organism being sampled in order to establish a symbiotic relationship with the host (with which it was observed at the time of sampling) via a mode of transmission (specified in mode_transmission), e.g., environmental:faecal-oral, transplacental, vector-borne:vector penetration</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>salinity</td>
|
||
<td>salinity</td>
|
||
<td></td>
|
||
<td>salinity measurement</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>salinity method</td>
|
||
<td>salinity_meth</td>
|
||
<td>extreme unusual properties/salinity method, <br />salinity meth</td>
|
||
<td>reference or method used in determining salinity</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>salt regimen</td>
|
||
<td>salt_regm</td>
|
||
<td>salt regm</td>
|
||
<td>information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment duration, interval and total experimental duration; can include multiple salt regimens</td>
|
||
<td>{text};{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>same as</td>
|
||
<td>same_as</td>
|
||
<td></td>
|
||
<td>indicates that the same physical sample has multiple BioSample records</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample capture status</td>
|
||
<td>samp_capt_status</td>
|
||
<td>samp capt status</td>
|
||
<td>Reason for the sample, e.g., active surveillance in response to an outbreak, active surveillance not initiated by an outbreak, farm sample, market sample</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample collection device or method</td>
|
||
<td>samp_collect_device</td>
|
||
<td>samp collect device, <br />sampling device</td>
|
||
<td>Method or device employed for collecting sample</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample collection method</td>
|
||
<td>samp_collect_method</td>
|
||
<td>samp collect method</td>
|
||
<td>The method employed for collecting the sample</td>
|
||
<td>{text}|{PMID}|{DOI}|{URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample collection point</td>
|
||
<td>samp_collect_point</td>
|
||
<td>samp collect point</td>
|
||
<td>Sampling point on the asset where sample was collected, e.g., well, test well, drilling rig, wellhead, separator, storage tank</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample disease stage</td>
|
||
<td>samp_dis_stage</td>
|
||
<td>samp dis stage</td>
|
||
<td>Stage of the disease at the time of sample collection, e.g., dissemination, growth and reproduction, infection, inoculation, penetration</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample location condition</td>
|
||
<td>samp_loc_condition</td>
|
||
<td>samp loc condition</td>
|
||
<td>The condition of the sample location at the time of sampling, e.g., damaged, new, rupture, visible signs of mold-mildew, visible weariness repair</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample material processing</td>
|
||
<td>samp_mat_process</td>
|
||
<td>samp mat process</td>
|
||
<td>Processing applied to the sample during or after isolation</td>
|
||
<td>{text|term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample material type (host or environmental context)</td>
|
||
<td>samp_mat_type</td>
|
||
<td>samp mat type</td>
|
||
<td>The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample measured depth</td>
|
||
<td>samp_md</td>
|
||
<td>samp md</td>
|
||
<td>In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If "other" is specified, please propose entry in "additional info" field</td>
|
||
<td>{float} {unit};[GL|DF|RT|KB|MSL|other]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample name</td>
|
||
<td>sample_name</td>
|
||
<td></td>
|
||
<td>sample name in source database</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample pooling</td>
|
||
<td>samp_pooling</td>
|
||
<td>samp pooling</td>
|
||
<td>Physical combination of several instances of like material, e.g., RNA extracted from samples or dishes of cell cultures into one big aliquot of cells. Please provide a short description of the samples that were pooled</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample salinity</td>
|
||
<td>samp_salinity</td>
|
||
<td>samp salinity</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample size</td>
|
||
<td>samp_size</td>
|
||
<td>samp size</td>
|
||
<td>Amount or size of sample (volume, mass or area) that was collected</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample size sorting method</td>
|
||
<td>samp_sort_meth</td>
|
||
<td>samp sort meth</td>
|
||
<td>method by which samples are sorted</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample source material category</td>
|
||
<td>samp_source_mat_cat</td>
|
||
<td>samp source mat cat</td>
|
||
<td>This is the scientific role or category that the subject organism or material has with respect to an investigation. This field accepts terms listed under specimen source material category (http://purl.obolibrary.org/obo/GENEPIO_0001237 or http://purl.obolibrary.org/obo/OBI_0100051)</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample storage device</td>
|
||
<td>samp_stor_device</td>
|
||
<td>samp stor device</td>
|
||
<td>The container used to store the sample. This field accepts terms listed under container (http://purl.obolibrary.org/obo/NCIT_C43186). If the proper descriptor is not listed please use text to describe the storage device</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample storage duration</td>
|
||
<td>samp_store_dur</td>
|
||
<td>samp stor dur, <br />samp store dur</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample storage location</td>
|
||
<td>samp_store_loc</td>
|
||
<td>samp stor loc, <br />samp store loc</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample storage media</td>
|
||
<td>samp_stor_media</td>
|
||
<td>samp stor media</td>
|
||
<td>The liquid that is added to the sample collection device prior to sampling. If the sample is pre-hydrated, indicate the liquid media the sample is pre-hydrated with for storage purposes. This field accepts terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is not listed please use text to describe the sample storage media</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample storage solution</td>
|
||
<td>samp_store_sol</td>
|
||
<td>samp store sol</td>
|
||
<td>Solution within which sample was stored, if any</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample storage temperature</td>
|
||
<td>samp_store_temp</td>
|
||
<td>samp stor temp, <br />samp store temp</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample subtype</td>
|
||
<td>samp_subtype</td>
|
||
<td>samp subtype</td>
|
||
<td>Name of sample sub-type, e.g., oil phase, water phase, biofilm, not applicable</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample surface moisture</td>
|
||
<td>samp_surf_moisture</td>
|
||
<td>samp surf moisture</td>
|
||
<td>Degree of water held on a sampled surface, e.g., intermittent moisture, not present, submerged</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample transport conditions</td>
|
||
<td>samp_transport_cond</td>
|
||
<td>samp transport cond</td>
|
||
<td>Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g., 5.5 days; 20C)</td>
|
||
<td>{float} {unit};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample transport container</td>
|
||
<td>samp_transport_cont</td>
|
||
<td>samp transport cont</td>
|
||
<td>Container in which the sample was stored during transport. Indicate the location name, e.g., bottle, cooler, glass vial, plastic vial, vendor supplied container</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample transport duration</td>
|
||
<td>samp_transport_dur</td>
|
||
<td>samp transport dur</td>
|
||
<td>The duration of time from when the sample was collected until processed. Indicate the duration for which the sample was stored written in ISO 8601 format</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample transport temperature</td>
|
||
<td>samp_transport_temp</td>
|
||
<td>samp transport temp</td>
|
||
<td>Temperature at which sample was transported, e.g., -20 or 4 degree Celsius</td>
|
||
<td>{float} {unit} {text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample true vertical depth subsea</td>
|
||
<td>samp_tvdss</td>
|
||
<td>samp tvdss</td>
|
||
<td>Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g., 1325.75-1362.25 m</td>
|
||
<td>{float}-{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample type</td>
|
||
<td>sample_type</td>
|
||
<td></td>
|
||
<td>Sample type, such as cell culture, mixed culture, tissue sample, whole organism, single cell, metagenomic assembly</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample use</td>
|
||
<td>sample_use</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample volume or weight for DNA extraction</td>
|
||
<td>samp_vol_we_dna_ext</td>
|
||
<td>samp vol we dna ext, <br />sample volume or weight for dna extraction</td>
|
||
<td>volume (mL) or weight (g) of sample processed for DNA extraction</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sample well name</td>
|
||
<td>samp_well_name</td>
|
||
<td>samp well name</td>
|
||
<td>Name of the well where sample was taken, e.g., BXA1123</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sampling day weather</td>
|
||
<td>samp_weather</td>
|
||
<td>samp weather</td>
|
||
<td>The weather on the sampling day, e.g., clear sky, cloudy, foggy, hail, rain, snow, sleet, sunny, windy</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sampling floor</td>
|
||
<td>samp_floor</td>
|
||
<td>samp floor</td>
|
||
<td>The floor of the building, where the sampling room is located, e.g., 1st floor, 2nd floor, basement, lobby</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sampling room ID or name</td>
|
||
<td>samp_room_id</td>
|
||
<td>samp room id, <br />sampling room id or name</td>
|
||
<td>Sampling room number. This ID should be consistent with the designations on the building floor plans</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sampling room sterilization method</td>
|
||
<td>ster_meth_samp_room</td>
|
||
<td>ster meth samp room</td>
|
||
<td>The method used to sterilize the sampling room. This field accepts terms listed under electromagnetic radiation (http://purl.obolibrary.org/obo/ENVO_01001026). If the proper descriptor is not listed, please use text to describe the sampling room sterilization method. Multiple terms can be separated by pipes</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sampling time outside</td>
|
||
<td>samp_time_out</td>
|
||
<td>samp time out</td>
|
||
<td>The recent and long term history of outside sampling</td>
|
||
<td>{float}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sanitizer used during postharvest cleaning</td>
|
||
<td>sanitizer_used_postharvest</td>
|
||
<td>sanitizer used postharvest</td>
|
||
<td>Substance intended for preventing, neutralizing, destroying, repelling, or mitigating the effects of any pest or microorganism; indicate the sanitizer used during the postharvest cleaning process. Multiple terms can be separated by pipes, e.g., chlorine bleach</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>saturates wt%</td>
|
||
<td>saturates_pc</td>
|
||
<td>saturates pc</td>
|
||
<td>Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>season</td>
|
||
<td>season</td>
|
||
<td></td>
|
||
<td>The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729)</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>seasonal environment</td>
|
||
<td>season_environment</td>
|
||
<td>season environment</td>
|
||
<td>treatment involving an exposure to a particular season (e.g. winter, summer, rabi, rainy etc.)</td>
|
||
<td>{text};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>seasonal use</td>
|
||
<td>season_use</td>
|
||
<td>season use</td>
|
||
<td>The seasons the space is occupied, e.g., spring, summer, fall, winter</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>secondary and tertiary recovery methods and start date</td>
|
||
<td>add_recov_method</td>
|
||
<td>add recov method</td>
|
||
<td>Additional (i.e. secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them, e.g., water injection {timestamp}, dump flood {timestamp}, gas injection {timestamp}, wag immiscible injection {timestamp}, polymer addition {timestamp}, surfactant addition {timestamp}</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>secondary treatment</td>
|
||
<td>secondary_treatment</td>
|
||
<td></td>
|
||
<td>the process for substantially degrading the biological content of the sewage</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sediment type</td>
|
||
<td>sediment_type</td>
|
||
<td></td>
|
||
<td>information about the sediment type based on major constituents</td>
|
||
<td>['', 'biogenous', 'cosmogenous', 'hydrogenous', 'lithogenous']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sequenced by</td>
|
||
<td>sequenced_by</td>
|
||
<td></td>
|
||
<td>The name of the agency that generated the sequence, e.g., Centers for Disease Control and Prevention</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>serogroup</td>
|
||
<td>serogroup</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>serotype</td>
|
||
<td>serotype</td>
|
||
<td></td>
|
||
<td>Taxonomy below subspecies; a variety (in bacteria, fungi or virus) usually based on its antigenic properties. Same as serovar and serogroup. e.g. serotype="H1N1" in Influenza A virus CY098518.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>serovar</td>
|
||
<td>serovar</td>
|
||
<td></td>
|
||
<td>Taxonomy below subspecies; a variety (in bacteria, fungi or virus) usually based on its antigenic properties. Same as serovar and serotype. Sometimes used as species identifier in bacteria with shaky taxonomy, e.g. Leptospira, serovar saopaolo S76607 (65357 in Entrez).</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>serovar or serotype</td>
|
||
<td>serovar_or_serotype</td>
|
||
<td></td>
|
||
<td>A characterization of a cell or microorganism based on the antigenic properties of the molecules on its surface. Indicate the name of a serovar or serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy</td>
|
||
<td>{termLabel} {[termID]}|{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sewage type</td>
|
||
<td>sewage_type</td>
|
||
<td></td>
|
||
<td>type of wastewater treatment plant as municipial or industrial</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sex</td>
|
||
<td>sex</td>
|
||
<td>donor sex, <br />experimental factor: sex, <br />gender, <br />sample gender, <br />sample sex</td>
|
||
<td>physical sex of sampled organism</td>
|
||
<td>['', 'male', 'female', 'pooled male and female', 'neuter', 'hermaphrodite', 'intersex', 'not determined', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sexual activity</td>
|
||
<td>sexual_act</td>
|
||
<td>sexual act</td>
|
||
<td>current sexual partner and frequency of sex</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>shading device condition</td>
|
||
<td>shading_device_cond</td>
|
||
<td>shading device cond</td>
|
||
<td>The physical condition of the shading device at the time of sampling, e.g., damaged, needs repair, new, rupture, visible wear</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>shading device location</td>
|
||
<td>shading_device_loc</td>
|
||
<td>shading device loc</td>
|
||
<td>The location of the shading device in relation to the built structure, e.g., exterior, interior</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>shading device material</td>
|
||
<td>shading_device_mat</td>
|
||
<td>shading device mat</td>
|
||
<td>The material the shading device is composed of</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>shading device signs of water/mold</td>
|
||
<td>shad_dev_water_mold</td>
|
||
<td>shad dev water mold</td>
|
||
<td>Signs of the presence of mold or mildew on the shading device, e.g., presence of mold visible, no presence of mold visible</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>shading device type</td>
|
||
<td>shading_device_type</td>
|
||
<td></td>
|
||
<td>The type of shading device, e.g., bahama shutters, exterior roll blind, gambrel awning, hood awning, porchroller awning, sarasota shutters, slatted aluminum, solid aluminum awning, sun screen, tree, trellis, venetian awning</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sieving</td>
|
||
<td>sieving</td>
|
||
<td>composite design/sieving (if any)</td>
|
||
<td>collection design of pooled samples and/or sieve size and amount of sample sieved</td>
|
||
<td>{{text}|{float} {unit}};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>silicate</td>
|
||
<td>silicate</td>
|
||
<td></td>
|
||
<td>concentration of silicate</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>size fraction selected</td>
|
||
<td>size_frac</td>
|
||
<td>size frac</td>
|
||
<td>Filtering pore size used in sample preparation, e.g., 0-0.22 micrometer</td>
|
||
<td>{term}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>size-fraction lower threshold</td>
|
||
<td>size_frac_low</td>
|
||
<td>size frac low, <br />size fraction lower threshold</td>
|
||
<td>Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials larger than the size threshold are excluded from the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>size-fraction upper threshold</td>
|
||
<td>size_frac_up</td>
|
||
<td>size frac up, <br />size fraction upper threshold</td>
|
||
<td>Refers to the mesh/pore size used to retain the sample. Materials smaller than the size threshold are excluded from the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>slope aspect</td>
|
||
<td>slope_aspect</td>
|
||
<td></td>
|
||
<td>the direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees); e.g., NW or 315°. This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration.</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>slope gradient</td>
|
||
<td>slope_gradient</td>
|
||
<td></td>
|
||
<td>commonly called “slope.” The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer.</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sludge retention time</td>
|
||
<td>sludge_retent_time</td>
|
||
<td>sludge retent time</td>
|
||
<td>the time activated sludge remains in reactor</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>smoker</td>
|
||
<td>smoker</td>
|
||
<td></td>
|
||
<td>specification of smoking status</td>
|
||
<td>{boolean}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sodium</td>
|
||
<td>sodium</td>
|
||
<td></td>
|
||
<td>sodium concentration</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil conductivity</td>
|
||
<td>soil_conductivity</td>
|
||
<td></td>
|
||
<td>Conductivity of soil at time of sampling</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil cover</td>
|
||
<td>soil_cover</td>
|
||
<td></td>
|
||
<td>Description of the material covering the sampled soil. This field accepts terms under ENVO:00010483, environmental material</td>
|
||
<td>{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil depth</td>
|
||
<td>soil_depth</td>
|
||
<td></td>
|
||
<td>The vertical distance below local surface, e.g., for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil horizon</td>
|
||
<td>soil_horizon</td>
|
||
<td>horizon</td>
|
||
<td>specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath</td>
|
||
<td>['', 'O horizon', 'A horizon', 'E horizon', 'B horizon', 'C horizon', 'R layer', 'Permafrost']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil pH</td>
|
||
<td>soil_ph</td>
|
||
<td>soil ph</td>
|
||
<td>The pH of soil at time of sampling</td>
|
||
<td>{float}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil sediment porosity</td>
|
||
<td>soil_porosity</td>
|
||
<td>soil porosity</td>
|
||
<td>Porosity of soil or deposited sediment is volume of voids divided by the total volume of sample</td>
|
||
<td>{percentage}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil temperature</td>
|
||
<td>soil_temp</td>
|
||
<td>soil temp</td>
|
||
<td>Temperature of soil at the time of sampling</td>
|
||
<td>{float}{unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil texture classification</td>
|
||
<td>soil_texture_class</td>
|
||
<td>soil texture class</td>
|
||
<td>One of the 12 soil texture classes use to describe soil texture based on the relative proportion of different grain sizes of mineral particles [sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um)] in a soil, e.g., clay, clay loam, loam, loamy sand, sand, sandy clay, sandy clay loam, sandy loam, silt, silty clay, silty clay loam, silt loam</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil texture measurement</td>
|
||
<td>soil_text_measure</td>
|
||
<td>soil text measure, <br />texture</td>
|
||
<td>the relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional.</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil texture method</td>
|
||
<td>soil_texture_meth</td>
|
||
<td>soil texture meth, <br />texture meth, <br />texture method</td>
|
||
<td>reference or method used in determining soil texture</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil type</td>
|
||
<td>soil_type</td>
|
||
<td>soil type name</td>
|
||
<td>soil series name or other lower-level classification</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soil type method</td>
|
||
<td>soil_type_meth</td>
|
||
<td>soil type meth</td>
|
||
<td>reference or method used in determining soil series name or other lower-level classification</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>solar irradiance</td>
|
||
<td>solar_irradiance</td>
|
||
<td></td>
|
||
<td>the amount of solar energy that arrives at a specific area of a surface during a specific time interval</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soluble inorganic material</td>
|
||
<td>soluble_inorg_mat</td>
|
||
<td>soluble inorg mat</td>
|
||
<td>concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc.</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soluble organic material</td>
|
||
<td>soluble_org_mat</td>
|
||
<td>soluble org mat</td>
|
||
<td>concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc.</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>soluble reactive phosphorus</td>
|
||
<td>soluble_react_phosp</td>
|
||
<td>soluble react phosp</td>
|
||
<td>concentration of soluble reactive phosphorus</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>source material identifiers</td>
|
||
<td>source_material_id</td>
|
||
<td>source mat id, <br />source material id</td>
|
||
<td>unique identifier assigned to a material sample used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples.</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>source name</td>
|
||
<td>source_name</td>
|
||
<td></td>
|
||
<td>Sample source name or description</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>source of UViGs</td>
|
||
<td>source_uvig</td>
|
||
<td>source of uvigs, <br />source uvig</td>
|
||
<td>Type of dataset from which the UViG was obtained</td>
|
||
<td>['', 'metagenome (not viral targeted)', 'viral fraction metagenome (virome)', 'sequence-targeted metagenome', 'metatranscriptome (not viral targeted)', 'viral fraction RNA metagenome (RNA virome)', 'sequence-targeted RNA metagenome', 'microbial single amplified genome (SAG)', 'viral single amplified genome (vSAG)', 'isolate microbial genome', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>source rock depositional environment</td>
|
||
<td>sr_dep_env</td>
|
||
<td>sr dep env</td>
|
||
<td>Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock), e.g., lacustine, fluvioldeltaic, fluviomarine, marine</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>source rock geological age</td>
|
||
<td>sr_geol_age</td>
|
||
<td>sr geol age</td>
|
||
<td>Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)), e.g., archean, cambrian, carboniferous, cenozoic, cretaceous, devonian, jurassic, mesozoic, neogene, ordovician, paleogene, paleozoic, permian, precambrian, proterozoic, silurian, triassic</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>source rock kerogen type</td>
|
||
<td>sr_kerog_type</td>
|
||
<td>sr kerog type</td>
|
||
<td>Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen), e.g., type I, type II, type III, type IV</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>source rock lithology</td>
|
||
<td>sr_lithology</td>
|
||
<td>sr lithology</td>
|
||
<td>Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock), e.g., clastic, carbonate, coal, biosilicieous</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>source type</td>
|
||
<td>source_type</td>
|
||
<td></td>
|
||
<td>Controlled vocabulary describing the isolation_source. Choose the best fit term: Human, Animal, Food, Environmental, Other, e.g., Food</td>
|
||
<td>['', 'human', 'animal', 'food', 'environmental', 'other', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>space typical state</td>
|
||
<td>space_typ_state</td>
|
||
<td>space typ state</td>
|
||
<td>customary or normal state of the space</td>
|
||
<td>['', 'typical occupied', 'typically unoccupied', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>special diet</td>
|
||
<td>special_diet</td>
|
||
<td></td>
|
||
<td>specification of special diet; can include multiple special diets</td>
|
||
<td>['', 'low carb', 'reduced calorie', 'vegetarian', 'other(to be specified)']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>specific humidity</td>
|
||
<td>specific_humidity</td>
|
||
<td></td>
|
||
<td>The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>specific intended consumer</td>
|
||
<td>spec_intended_cons</td>
|
||
<td>spec intended cons</td>
|
||
<td>Food consumer type, human or animal, for which the food product is produced and marketed. This field encourages terms listed under food consumer group (http://purl.obolibrary.org/obo/FOODON_03510136), e.g., infant or toddler as food consumer [FOODON:03510020]</td>
|
||
<td>['', 'animal as food consumer', 'laboratory animal as food consumer', 'non-food animal as food consumer', 'pet animal as consumer', 'pet fish as consumer', 'pet cat as consumer', 'pet bird as consumer', 'pet dog as consumer', 'sheep or goat as consumer', 'food animal as consumer', 'food fish as consumer', 'poultry as consumer', 'pig as consumer', 'game as consumer', 'rabbit as consumer', 'cattle as consumer', 'horse as consumer', 'human as food consumer', 'adult human as food consumer', 'man as food consumer', 'woman as food consumer', 'senior as food consumer', 'athlete as food consumer', 'bodybuilder as food consumer', 'weight-reducer as food consumer', 'human as food consumer, four years and above', 'teenager as food consumer', 'child as food consumer, less than four years', 'infant or toddler as food consumer', 'toddler as food consumer, 12 months and onwards', 'infant as food consumer', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>specifications</td>
|
||
<td>specific</td>
|
||
<td>specific</td>
|
||
<td>The building specifications, e.g., operation, as built, construction, bid, design, photos</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>specimen voucher</td>
|
||
<td>specimen_voucher</td>
|
||
<td>specimenvoucher</td>
|
||
<td>Identifier for the physical specimen. Use format: "[<institution-code>:[<collection-code>:]]<specimen_id>", eg, "UAM:Mamm:52179". Intended as a reference to the physical specimen that remains after it was analyzed. If the specimen was destroyed in the process of analysis, electronic images (e-vouchers) are an adequate substitute for a physical voucher specimen. Ideally the specimens will be deposited in a curated museum, herbarium, or frozen tissue collection, but often they will remain in a personal or laboratory collection for some time before they are deposited in a curated collection. There are three forms of specimen_voucher qualifiers. If the text of the qualifier includes one or more colons it is a 'structured voucher'. Structured vouchers include institution-codes (and optional collection-codes) taken from a controlled vocabulary maintained by the INSDC that denotes the museum or herbarium collection where the specimen resides, please visit: http://www.insdc.org/controlled-vocabulary-specimenvoucher-qualifier.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>spike in organism</td>
|
||
<td>spikein_org</td>
|
||
<td>spikein org</td>
|
||
<td>Taxonomic information about the spike-in organism(s). This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes</td>
|
||
<td>{termLabel} {[termID]}|{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>spike-in bacterial serovar or serotype</td>
|
||
<td>spikein_serovar</td>
|
||
<td>spike in bacterial serovar or serotype, <br />spikein serovar</td>
|
||
<td>Taxonomic information about the spike-in organism(s) at the serovar or serotype level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes</td>
|
||
<td>{termLabel} {[termID]}|{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>spike-in growth medium</td>
|
||
<td>spikein_growth_med</td>
|
||
<td>spike in growth medium, <br />spikein growth med</td>
|
||
<td>A liquid or gel containing nutrients, salts, and other factors formulated to support the growth of microorganisms, cells, or plants (National Cancer Institute Thesaurus). A growth medium is a culture medium which has the disposition to encourage growth of particular bacteria to the exclusion of others in the same growth environment. In this case, list the culture medium used to propagate the spike-in bacteria during preparation of spike-in inoculum. This field accepts terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is not listed please use text to describe the spike in growth media</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>spike-in microbial strain</td>
|
||
<td>spikein_strain</td>
|
||
<td>spike in microbial strain, <br />spikein strain</td>
|
||
<td>Taxonomic information about the spike-in organism(s) at the strain level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes</td>
|
||
<td>{termLabel} {[termID]}|{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>spike-in organism count</td>
|
||
<td>spikein_count</td>
|
||
<td>spike in organism count, <br />spikein count</td>
|
||
<td>Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g., qPCR, atp, mpn, etc.) should also be provided, e.g., total prokaryotes; 3.5e7 cells per ml; qPCR</td>
|
||
<td>{text};{float} {unit};[ATP|MPN|qPCR|other]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>spike-in with antibiotics</td>
|
||
<td>spikein_antibiotic</td>
|
||
<td>spike in with antibiotics, <br />spikein antibiotic</td>
|
||
<td>Antimicrobials used in research study to assess effects of exposure on microbiome of a specific site. Please list antimicrobial, common name and/or class and concentration used for spike-in</td>
|
||
<td>{text} {integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>spike-in with heavy metals</td>
|
||
<td>spikein_metal</td>
|
||
<td>spike in with heavy metals, <br />spikein metal</td>
|
||
<td>Heavy metals used in research study to assess effects of exposure on microbiome of a specific site. Please list heavy metals and concentration used for spike-in</td>
|
||
<td>{text} {integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>standing water regimen</td>
|
||
<td>standing_water_regm</td>
|
||
<td>standing water regm</td>
|
||
<td>treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water; can include multiple regimens</td>
|
||
<td>{text};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>storage conditions</td>
|
||
<td>store_cond</td>
|
||
<td>storage conditions (fresh/frozen/other), <br />store cond</td>
|
||
<td>explain how and for how long the soil sample was stored before DNA extraction.</td>
|
||
<td>{text};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>strain</td>
|
||
<td>strain</td>
|
||
<td>organism strain, <br />strain id, <br />strain or line</td>
|
||
<td>microbial or eukaryotic strain name</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>stud book number</td>
|
||
<td>stud_book_number</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>study completion status</td>
|
||
<td>study_complt_stat</td>
|
||
<td>study complt stat</td>
|
||
<td>specification of study completion status, if no the reason should be specified</td>
|
||
<td>{boolean};[adverse event|non-compliance|lost to follow up|other-specify]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>study design</td>
|
||
<td>study_design</td>
|
||
<td></td>
|
||
<td>Epidemiological or omics reseach design context that this biosample was used in.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>study disease</td>
|
||
<td>study_disease</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>study incubation duration</td>
|
||
<td>study_inc_dur</td>
|
||
<td>study inc dur</td>
|
||
<td>Sample incubation duration if unpublished or unvalidated method is used. Indicate the timepoint written in ISO 8601 format</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>study incubation temperature</td>
|
||
<td>study_inc_temp</td>
|
||
<td>study inc temp</td>
|
||
<td>Sample incubation temperature if unpublished or unvalidated method is used</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>study name</td>
|
||
<td>study_name</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>study treatment</td>
|
||
<td>study_tmnt</td>
|
||
<td>study tmnt</td>
|
||
<td>A process in which the act is intended to modify or alter some other material entity. From the study design, each treatment is comprised of one level of one or multiple factors. This field accepts terms listed under treatment (http://purl.obolibrary.org/obo/MCO_0000866). If the proper descriptor is not listed please use text to describe the study treatment. Multiple terms can be separated by one or more pipes</td>
|
||
<td>{text}|{termLabel} {[termID]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sub species</td>
|
||
<td>sub_species</td>
|
||
<td>subsp, <br />subsp., <br />subspecies</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>subclone</td>
|
||
<td>subclone</td>
|
||
<td>sub clone</td>
|
||
<td>Name for the derived clone or subculture from which the sample was taken.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>subgroup</td>
|
||
<td>subgroup</td>
|
||
<td></td>
|
||
<td>Taxonomy below subspecies; sometimes used in viruses to denote subgroups taken from a single isolate.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>subject is affected</td>
|
||
<td>subject_is_affected</td>
|
||
<td></td>
|
||
<td>Case vs control status for the subject of this sample, for case-control studies</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>submitted sample id</td>
|
||
<td>submitted_sample_id</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>submitted subject id</td>
|
||
<td>submitted_subject_id</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>submitter handle</td>
|
||
<td>submitter_handle</td>
|
||
<td></td>
|
||
<td>dbgap_public dictionary</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>submitter-asserted type strain</td>
|
||
<td>type_strain</td>
|
||
<td>submitter asserted type strain, <br />type strain</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>subsource note</td>
|
||
<td>subsrc_note</td>
|
||
<td>subsrc note</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>subspecific genetic lineage</td>
|
||
<td>subspecf_gen_lin</td>
|
||
<td>subspecf gen lin</td>
|
||
<td>Information about the genetic distinctness of the lineage (eg., biovar, serovar)</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>substrain</td>
|
||
<td>substrain</td>
|
||
<td>sub strain</td>
|
||
<td>One level below strain.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>substrate</td>
|
||
<td>substrate</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>substructure type</td>
|
||
<td>substructure_type</td>
|
||
<td></td>
|
||
<td>substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level</td>
|
||
<td>['', 'crawlspace', 'slab on grade', 'basement']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>subtype</td>
|
||
<td>subtype</td>
|
||
<td>sub type</td>
|
||
<td>Used as classifier in viruses (e.g. HIV type 1, Group M, Subtype A).</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>sulfate</td>
|
||
<td>sulfate</td>
|
||
<td></td>
|
||
<td>concentration of sulfate</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sulfate in formation water</td>
|
||
<td>sulfate_fw</td>
|
||
<td>sulfate fw</td>
|
||
<td>Original sulfate concentration in the hydrocarbon resource</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>sulfide</td>
|
||
<td>sulfide</td>
|
||
<td></td>
|
||
<td>concentration of sulfide</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>surface humidity</td>
|
||
<td>surf_humidity</td>
|
||
<td>surf humidity</td>
|
||
<td>surfaces: water activity as a function of air and material moisture</td>
|
||
<td>{float} {unit} [%]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>surface material</td>
|
||
<td>surf_material</td>
|
||
<td>surf material</td>
|
||
<td>surface materials at the point of sampling</td>
|
||
<td>['', 'concrete', 'wood', 'stone', 'tile', 'plastic', 'glass', 'vinyl', 'metal', 'carpet', 'stainless steel', 'paint', 'cinder blocks', 'hay bales', 'stucco', 'adobe', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>surface moisture</td>
|
||
<td>surf_moisture</td>
|
||
<td>surf moisture</td>
|
||
<td>water held on a surface</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>surface moisture pH</td>
|
||
<td>surf_moisture_ph</td>
|
||
<td>surf moisture ph, <br />surface moisture ph</td>
|
||
<td>pH measurement of surface</td>
|
||
<td>{integer [0-14]}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>surface orientation</td>
|
||
<td>surface_orientation</td>
|
||
<td></td>
|
||
<td>Describe which surface of the object is swabbed. (e.g underside, top, corner), e.g., underside</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>surface temperature</td>
|
||
<td>surf_temp</td>
|
||
<td>surf temp</td>
|
||
<td>temperature of the surface at the time of sampling</td>
|
||
<td>{float} {unit} [deg C]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>surface-air contaminant</td>
|
||
<td>surf_air_cont</td>
|
||
<td>surf air cont, <br />surface air contaminant</td>
|
||
<td>contaminant identified on surface</td>
|
||
<td>['', 'dust', 'organic matter', 'particulate matter', 'volatile organic compounds', 'biological contaminants', 'radon', 'nutrients', 'biocides']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>suspended particulate matter</td>
|
||
<td>suspend_part_matter</td>
|
||
<td>suspend part matter</td>
|
||
<td>concentration of suspended particulate matter</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>suspended solids</td>
|
||
<td>suspend_solids</td>
|
||
<td>suspend solids</td>
|
||
<td>concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter, etc,; can include multiple substances</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>symbiotic host organism life cycle type</td>
|
||
<td>sym_life_cycle_type</td>
|
||
<td>sym life cycle type</td>
|
||
<td>Type of life cycle of the symbiotic host species (the thing being sampled). Simple life cycles occur within a single host, complex ones within multiple different hosts over the course of their normal life cycle, e.g., complex life cycle, simple life cycle</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>technical sample replicate</td>
|
||
<td>samp_rep_tech</td>
|
||
<td>samp rep tech</td>
|
||
<td>Repeated measurements of the same sample that show independent measures of the noise associated with the equipment and the protocols</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>teleomorph</td>
|
||
<td>teleomorph</td>
|
||
<td></td>
|
||
<td>Genus and species of the sexual (fruiting) form of fungi - note that anamorph and teleomorph forms of the same taxon may have used taxonomic different names.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>temperature</td>
|
||
<td>temp</td>
|
||
<td>temp</td>
|
||
<td>temperature of the sample at time of sampling</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>temperature outside house</td>
|
||
<td>temp_out</td>
|
||
<td>temp out</td>
|
||
<td>The recorded temperature value at sampling time outside</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>tertiary treatment</td>
|
||
<td>tertiary_treatment</td>
|
||
<td></td>
|
||
<td>the process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>tidal stage</td>
|
||
<td>tidal_stage</td>
|
||
<td></td>
|
||
<td>stage of tide</td>
|
||
<td>['', 'low', 'high']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>tillage</td>
|
||
<td>tillage</td>
|
||
<td>history/tillage</td>
|
||
<td>note method(s) used for tilling</td>
|
||
<td>['', 'drill', 'cutting disc', 'ridge till', 'strip tillage', 'zonal tillage', 'chisel', 'tined', 'mouldboard', 'disc plough']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>time since last toothbrushing</td>
|
||
<td>time_last_toothbrush</td>
|
||
<td>time last toothbrush</td>
|
||
<td>specification of the time since last toothbrushing</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>time since last wash</td>
|
||
<td>time_since_last_wash</td>
|
||
<td></td>
|
||
<td>specification of the time since last wash</td>
|
||
<td>{timestamp}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>time-course duration</td>
|
||
<td>study_timecourse</td>
|
||
<td>study timecourse, <br />time course duration</td>
|
||
<td>For time-course research studies involving samples of the food commodity, indicate the total duration of the time-course study</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>timepoint</td>
|
||
<td>timepoint</td>
|
||
<td></td>
|
||
<td>Time point at which a sample or observation is made or taken from a biomaterial as measured from some reference point. Indicate the timepoint written in ISO 8601 format</td>
|
||
<td>{float}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>tissue</td>
|
||
<td>tissue</td>
|
||
<td>body site, <br />organ, <br />organism part, <br />organismpart, <br />source tissue, <br />tisssue, <br />tissue origin, <br />tissue type, <br />tissuetype</td>
|
||
<td>Type of tissue the sample was taken from.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>tissue culture growth media</td>
|
||
<td>tiss_cult_growth_med</td>
|
||
<td>tiss cult growth med</td>
|
||
<td>description of plant tissue culture growth media used</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>tissue lib</td>
|
||
<td>tissue_lib</td>
|
||
<td></td>
|
||
<td>Formal identifier that points to source institute and tissue library identifier.</td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>toluene</td>
|
||
<td>toluene</td>
|
||
<td></td>
|
||
<td>Concentration of toluene in the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total N method</td>
|
||
<td>tot_n_meth</td>
|
||
<td>tot n meth, <br />total n method</td>
|
||
<td>reference or method used in determining the total N</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total acid number</td>
|
||
<td>tan</td>
|
||
<td>tan</td>
|
||
<td>Total Acid Number (TAN) is a measurement of acidity that is determined by the amount of potassium hydroxide in milligrams that is needed to neutralize the acids in one gram of oil. It is an important quality measurement of crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total carbon</td>
|
||
<td>tot_carb</td>
|
||
<td>tot carb</td>
|
||
<td>total carbon content</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total depth of water column</td>
|
||
<td>tot_depth_water_col</td>
|
||
<td>tot depth water col</td>
|
||
<td>measurement of total depth of water column</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total dissolved nitrogen</td>
|
||
<td>tot_diss_nitro</td>
|
||
<td>tot diss nitro</td>
|
||
<td>total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total inorganic nitrogen</td>
|
||
<td>tot_inorg_nitro</td>
|
||
<td>tot inorg nitro</td>
|
||
<td>total inorganic nitrogen content</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total iron</td>
|
||
<td>tot_iron</td>
|
||
<td>tot iron</td>
|
||
<td>Concentration of total iron in the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total mass</td>
|
||
<td>tot_mass</td>
|
||
<td>tot mass</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>total nitrogen</td>
|
||
<td>tot_nitro</td>
|
||
<td>tot n, <br />tot nitro, <br />total n</td>
|
||
<td>total nitrogen content of the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total nitrogen content method</td>
|
||
<td>tot_nitro_cont_meth</td>
|
||
<td>tot nitro cont meth</td>
|
||
<td>Reference or method used in determining the total nitrogen</td>
|
||
<td>{text}|{PMID}|{DOI}|{URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total organic carbon</td>
|
||
<td>tot_org_carb</td>
|
||
<td>tot org carb</td>
|
||
<td>Definition for soil: total organic C content of the soil units of g C/kg soil. Definition otherwise: total organic carbon content</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total organic carbon method</td>
|
||
<td>tot_org_c_meth</td>
|
||
<td>tot org c meth, <br />total organic c method</td>
|
||
<td>reference or method used in determining total organic C</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total particulate carbon</td>
|
||
<td>tot_part_carb</td>
|
||
<td>tot part carb</td>
|
||
<td>total particulate carbon content</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total phosphate</td>
|
||
<td>tot_phosphate</td>
|
||
<td>tot phosphate</td>
|
||
<td>total amount or concentration of phosphate</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total phosphorus</td>
|
||
<td>tot_phosp</td>
|
||
<td>tot phosp</td>
|
||
<td>total phosphorus concentration, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus. Can also be measured without filtering, reported as phosphorus</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>total sulfur</td>
|
||
<td>tot_sulfur</td>
|
||
<td>tot sulfur</td>
|
||
<td>Concentration of total sulfur in the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>train line</td>
|
||
<td>train_line</td>
|
||
<td></td>
|
||
<td>The subway line name, e.g., red, green, orange</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>train station collection location</td>
|
||
<td>train_stat_loc</td>
|
||
<td>train stat loc</td>
|
||
<td>The train station collection location, e.g., south station above ground, south station underground, south station amtrak, forest hills, riverside</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>train stop collection location</td>
|
||
<td>train_stop_loc</td>
|
||
<td>train stop loc</td>
|
||
<td>The train stop collection location, e.g., end, mid, downtown</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>travel outside the country in last six months</td>
|
||
<td>travel_out_six_month</td>
|
||
<td>travel out six month</td>
|
||
<td>specification of the countries travelled in the last six months; can include multiple travels</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>treatment</td>
|
||
<td>treatment</td>
|
||
<td>treatment protocol</td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>trophic level</td>
|
||
<td>trophic_level</td>
|
||
<td></td>
|
||
<td>Feeding position in food chain (eg., chemolithotroph)</td>
|
||
<td>['', 'autotroph', 'carboxydotroph', 'chemoautotroph', 'chemoheterotroph', 'chemolithoautotroph', 'chemolithotroph', 'chemoorganoheterotroph', 'chemoorganotroph', 'chemosynthetic', 'chemotroph', 'copiotroph', 'diazotroph', 'facultative', 'heterotroph', 'lithoautotroph', 'lithoheterotroph', 'lithotroph', 'methanotroph', 'methylotroph', 'mixotroph', 'obligate', 'chemoautolithotroph', 'oligotroph', 'organoheterotroph', 'organotroph', 'photoautotroph', 'photoheterotroph', 'photolithoautotroph', 'photolithotroph', 'photosynthetic', 'phototroph']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>turbidity</td>
|
||
<td>turbidity</td>
|
||
<td></td>
|
||
<td>turbidity measurement</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>twin sibling existence</td>
|
||
<td>twin_sibling</td>
|
||
<td>twin sibling, <br />twin sibling presence</td>
|
||
<td>specification of twin sibling presence</td>
|
||
<td>{boolean}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>type of symbiosis</td>
|
||
<td>type_of_symbiosis</td>
|
||
<td></td>
|
||
<td>Type of biological interaction established between the symbiotic host organism being sampled and its respective host, e.g., commensalistic, mutualistic, parasitic</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>type status</td>
|
||
<td>type_status</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>typical occupant density</td>
|
||
<td>typ_occupant_dens</td>
|
||
<td>typ occupant dens</td>
|
||
<td>customary or normal density of occupants</td>
|
||
<td>{float}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>upstream intervention</td>
|
||
<td>upstream_intervention</td>
|
||
<td></td>
|
||
<td>List any known health-related interventions (prophylactic, therapeutic, and/or metaphylactic) administered to the host, i.e. vaccinations, hormonal patches, antibiotics, injections in feed, etc., e.g., prophylactic/metaphylactic antibiotics</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>urine collection method</td>
|
||
<td>urine_collect_meth</td>
|
||
<td>urine collect meth</td>
|
||
<td>specification of urine collection method</td>
|
||
<td>['', 'clean catch', 'catheter']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>urogenital disorder</td>
|
||
<td>urogenit_disord</td>
|
||
<td>urogenit disord</td>
|
||
<td>history of urogenital disorders, can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>urogenital tract disorder</td>
|
||
<td>urogenit_tract_disor</td>
|
||
<td>urogenit tract disor</td>
|
||
<td>history of urogenitaltract disorders; can include multiple disorders</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>vaccine received</td>
|
||
<td>vaccine_received</td>
|
||
<td></td>
|
||
<td>Which vaccine did the host receive, e.g., Pfizer-BioNTech COVID-19 vaccine</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>variety</td>
|
||
<td>variety</td>
|
||
<td></td>
|
||
<td></td>
|
||
<td></td>
|
||
</tr>
|
||
<tr>
|
||
<td>ventilation rate</td>
|
||
<td>ventilation_rate</td>
|
||
<td></td>
|
||
<td>ventilation rate of the system in the sampled premises</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>ventilation type</td>
|
||
<td>ventilation_type</td>
|
||
<td></td>
|
||
<td>ventilation system used in the sampled premises</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>vfa in formation water</td>
|
||
<td>vfa_fw</td>
|
||
<td>vfa fw</td>
|
||
<td>Original volatile fatty acid concentration in the hydrocarbon resource</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>virus enrichment approach</td>
|
||
<td>virus_enrich_appr</td>
|
||
<td>virus enrich appr</td>
|
||
<td>Approach used to enrich the sample for viruses, if any. If more than one approach was used, include multiple ‘virus_enrich_appr’ fields.</td>
|
||
<td>['', 'filtration', 'ultrafiltration', 'centrifugation', 'ultracentrifugation', 'PEG Precipitation', 'FeCl Precipitation', 'CsCl density gradient', 'DNAse', 'RNAse', 'targeted sequence capture', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>virus isolate of prior infection</td>
|
||
<td>virus_isolate_of_prior_infection</td>
|
||
<td></td>
|
||
<td>Specific isolate of SARS-CoV-2 in prior infection (if known), e.g., SARS-CoV-2/human/USA/CA-CDPH-001/2020</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>viscosity</td>
|
||
<td>viscosity</td>
|
||
<td></td>
|
||
<td>A measure of oil's resistance to gradual deformation by shear stress or tensile stress (e.g., 3.5 cp; 100C)</td>
|
||
<td>{float} {unit};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>visual media</td>
|
||
<td>vis_media</td>
|
||
<td>vis media</td>
|
||
<td>The building visual media, e.g., photos, videos, commonly of the building, site context (adjacent buildings, vegetation, terrain, streets), interiors, equipment, 3D scans</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>volatile fatty acids</td>
|
||
<td>vfa</td>
|
||
<td>vfa</td>
|
||
<td>Concentration of Volatile Fatty Acids in the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>volatile organic compounds</td>
|
||
<td>volatile_org_comp</td>
|
||
<td>volatile org comp</td>
|
||
<td>concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound</td>
|
||
<td>{text};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wall area</td>
|
||
<td>wall_area</td>
|
||
<td></td>
|
||
<td>The total area of the sampled room's walls</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wall construction type</td>
|
||
<td>wall_const_type</td>
|
||
<td>wall const type</td>
|
||
<td>The building class of the wall defined by the composition of the building elements and fire-resistance rating, e.g., frame construction, joisted masonry, light noncombustible, masonry noncombustible, modified fire resistive, fire resistive</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wall finish material</td>
|
||
<td>wall_finish_mat</td>
|
||
<td>wall finish mat</td>
|
||
<td>The material utilized to finish the outer most layer of the wall, e.g., plaster, gypsum plaster, veneer plaster, gypsum board, tile, terrazzo, stone facing, acoustical treatment, wood, metal, masonry</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wall height</td>
|
||
<td>wall_height</td>
|
||
<td></td>
|
||
<td>The average height of the walls in the sampled room</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wall location</td>
|
||
<td>wall_loc</td>
|
||
<td>wall loc</td>
|
||
<td>The relative location of the wall within the room, e.g., north, south, east, west</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wall signs of water/mold</td>
|
||
<td>wall_water_mold</td>
|
||
<td>wall water mold</td>
|
||
<td>Signs of the presence of mold or mildew on a wall, e.g., presence of mold visible, no presence of mold visible</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wall surface treatment</td>
|
||
<td>wall_surf_treatment</td>
|
||
<td>wall surf treatment</td>
|
||
<td>The surface treatment of interior wall, e.g., painted, wall paper, no treatment, paneling, stucco, fabric</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wall texture</td>
|
||
<td>wall_texture</td>
|
||
<td></td>
|
||
<td>The feel, appearance, or consistency of a wall surface, e.g., crows feet, crows-foot stomp, double skip, hawk and trowel, knockdown, popcorn, orange peel, rosebud stomp, Santa-Fe texture, skip trowel, smooth, stomp knockdown, swirl</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wall thermal mass</td>
|
||
<td>wall_thermal_mass</td>
|
||
<td></td>
|
||
<td>The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater endogenous control 1</td>
|
||
<td>ww_endog_control_1</td>
|
||
<td>ww endog control 1</td>
|
||
<td>The name of an organism, gene, or compound used as an endogenous wastewater control, e.g., pepper mild mottle virus</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater endogenous control 1 concentration</td>
|
||
<td>ww_endog_control_1_conc</td>
|
||
<td>ww endog control 1 conc</td>
|
||
<td>The concentration of the endogenous control specified in 'ww_endog_control_1' on a per wastewater unit basis, e.g., 700000000</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater endogenous control 1 protocol</td>
|
||
<td>ww_endog_control_1_protocol</td>
|
||
<td>ww endog control 1 protocol</td>
|
||
<td>The protocol used to quantify 'ww_endog_control_1'. Specify a reference, website, or brief description. </td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater endogenous control 1 units</td>
|
||
<td>ww_endog_control_1_units</td>
|
||
<td>ww endog control 1 units</td>
|
||
<td>The units of the value specified in 'ww_endog_control_1_conc', e.g., copies/L wastewater</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater endogenous control 2</td>
|
||
<td>ww_endog_control_2</td>
|
||
<td>ww endog control 2</td>
|
||
<td>The name of an organism, gene, or compound used as an endogenous wastewater control, e.g., crassphage</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater endogenous control 2 concentration</td>
|
||
<td>ww_endog_control_2_conc</td>
|
||
<td>ww endog control 2 conc</td>
|
||
<td>The concentration of the endogenous control specified in 'ww_endog_control_2' on a per wastewater unit basis, e.g., 140000000</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater endogenous control 2 protocol</td>
|
||
<td>ww_endog_control_2_protocol</td>
|
||
<td>ww endog control 2 protocol</td>
|
||
<td>The protocol used to quantify 'ww_endog_control_2'. Specify a reference, website, or brief description. </td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater endogenous control 2 units</td>
|
||
<td>ww_endog_control_2_units</td>
|
||
<td>ww endog control 2 units</td>
|
||
<td>The units of the value specified in 'ww_endog_control_2_conc', e.g., copies/L wastewater</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater flow</td>
|
||
<td>ww_flow</td>
|
||
<td>ww flow</td>
|
||
<td>Daily volumetric flow through collection site, in units of liters per day, e.g., 110000000.</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater industrial effluent percent</td>
|
||
<td>ww_industrial_effluent_percent</td>
|
||
<td>ww industrial effluent percent</td>
|
||
<td>Percentage of industrial effluents received by wastewater treatment plant, e.g., 10</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater pH</td>
|
||
<td>ww_ph</td>
|
||
<td>wastewater ph, <br />ww ph</td>
|
||
<td>pH measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid, e.g., 7.2</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater population</td>
|
||
<td>ww_population</td>
|
||
<td>ww population</td>
|
||
<td>Number of persons contributing wastewater to this sample collection site; if unknown, estimate to the nearest order of magnitude, e.g., 10000. If no estimate is available, input NA.</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater population source</td>
|
||
<td>ww_population_source</td>
|
||
<td>ww population source</td>
|
||
<td>Source of value specified in 'ww_population', e.g., wastewater utility billing records, population of jurisdiction encompassing the wastewater service area, census blocks clipped to wastewater service area polygon </td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater pre-treatment</td>
|
||
<td>ww_pre_treatment</td>
|
||
<td>wastewater pre treatment, <br />ww pre treatment</td>
|
||
<td>Describe any process of pre-treatment that removes materials that can be easily collected from the raw wastewater, e.g., flow equilibration basin promotes settling of some solids</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater primary sludge retention time</td>
|
||
<td>ww_primary_sludge_retention_time</td>
|
||
<td>ww primary sludge retention time</td>
|
||
<td>The time primary sludge remains in tank, in hours, e.g., 4.</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater processing protocol</td>
|
||
<td>ww_processing_protocol</td>
|
||
<td>ww processing protocol</td>
|
||
<td>The protocol used to process the wastewater sample. Processing includes laboratory procedures prior to and including nucleic acid purification (e.g., pasteurization, concentration, extraction, etc). Specify a reference, website, or brief description. </td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater sample duration</td>
|
||
<td>ww_sample_duration</td>
|
||
<td>ww sample duration</td>
|
||
<td>Duration of composite sample collected, in units of hours, e.g., 24. Specify integer values. If the sample is not a composite sample, use 0.</td>
|
||
<td>{integer}{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater sample matrix</td>
|
||
<td>ww_sample_matrix</td>
|
||
<td>ww sample matrix</td>
|
||
<td>The wastewater matrix that was sampled</td>
|
||
<td>['', 'raw wastewater', 'sewer pipeline sediments', 'post grit removal', 'primary sludge', 'primary effluent', 'secondary sludge', 'secondary effluent', 'other', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater sample salinity</td>
|
||
<td>ww_sample_salinity</td>
|
||
<td>ww sample salinity</td>
|
||
<td>Salinity is the total concentration of all dissolved salts in a liquid or solid (in the form of an extract obtained by centrifugation) sample or derived from the conductivity measurement (practical salinity) in milligrams per liter, e.g., 100.</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater sample site</td>
|
||
<td>ww_sample_site</td>
|
||
<td>ww sample site</td>
|
||
<td>The type of site where the wastewater sample was collected</td>
|
||
<td>['', 'correctional facility', 'long-term care facility', 'hospital', 'child day care', 'school', 'college or university', 'social services shelter', 'other residential building', 'ship', 'airplane', 'airport', 'septic tank', 'other holding tank', 'wastewater treatment plant', 'wastewater lagoon', 'sewer pipeline', 'food or meat processing plant', 'other', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater sample type</td>
|
||
<td>ww_sample_type</td>
|
||
<td>ww sample type</td>
|
||
<td>Type of wastewater sample collected</td>
|
||
<td>['', 'grab', 'composite', 'swab-grab', 'swab-composite', 'missing', 'not applicable', 'not collected', 'not provided', 'restricted access']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance jurisdiction</td>
|
||
<td>ww_surv_jurisdiction</td>
|
||
<td>ww surv jurisdiction</td>
|
||
<td>A jurisdiction identifer that can be used to support linking the sample to a public health surveillance system, e.g., va</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance system sample ID</td>
|
||
<td>ww_surv_system_sample_id</td>
|
||
<td>wastewater surveillance system sample id, <br />ww surv system sample id</td>
|
||
<td>The sample ID used for submission to a public health surveillance system (e.g., CDC's National Wastewater Surveillance System), e.g., s123456</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 1</td>
|
||
<td>ww_surv_target_1</td>
|
||
<td>ww surv target 1</td>
|
||
<td>Taxonomic name of the surveillance target. For the COVID-19 response, use 'SARS-CoV-2'.</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 1 conc unit</td>
|
||
<td>ww_surv_target_1_conc_unit</td>
|
||
<td>ww surv target 1 conc unit</td>
|
||
<td>The units of the value specified in 'ww_surv_target_1_conc', e.g., copies/L wastewater</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 1 concentration</td>
|
||
<td>ww_surv_target_1_conc</td>
|
||
<td>ww surv target 1 conc</td>
|
||
<td>The concentration of the wastewater surveillance target specified in 'ww_surv_target_1' on a per wastewater unit basis, e.g., 200000</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 1 extract</td>
|
||
<td>ww_surv_target_1_extract</td>
|
||
<td>ww surv target 1 extract</td>
|
||
<td>Measured amount of surveillance target in the nucleic acid extract that was sequenced; on a per extract unit basis, rather than on a per wastewater sample unit basis, e.g., 100000</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 1 extract unit</td>
|
||
<td>ww_surv_target_1_extract_unit</td>
|
||
<td>ww surv target 1 extract unit</td>
|
||
<td>The units of the value specified in 'ww_surv_target_1_extract', e.g., copies/microliter extract</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 1 gene</td>
|
||
<td>ww_surv_target_1_gene</td>
|
||
<td>ww surv target 1 gene</td>
|
||
<td>The name of the gene quantified for the the surveillance target specified in 'ww_surv_target_1', e.g., N gene</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 1 known present</td>
|
||
<td>ww_surv_target_1_known_present</td>
|
||
<td>ww surv target 1 known present</td>
|
||
<td>Is genetic material of the surveillance target(s) known to the submitter to be present in this wastewater sample? Presence defined as microbiological evidence of the target organism in the wastewater sample, such as genetic- or culture-based detection.</td>
|
||
<td>['', 'no', 'yes']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 1 protocol</td>
|
||
<td>ww_surv_target_1_protocol</td>
|
||
<td>ww surv target 1 protocol</td>
|
||
<td>The protocol used to quantify 'ww_surv_target_1'. Specify a reference, website, or brief description. </td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 2</td>
|
||
<td>ww_surv_target_2</td>
|
||
<td>ww surv target 2</td>
|
||
<td>Taxonomic name of the surveillance target, eg, Norovirus</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 2 conc</td>
|
||
<td>ww_surv_target_2_conc</td>
|
||
<td>ww surv target 2 conc</td>
|
||
<td>The concentration of the wastewater surveillance target specified in 'ww_surv_target_2' on a per wastewater unit basis, e.g., 24000</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 2 conc unit</td>
|
||
<td>ww_surv_target_2_conc_unit</td>
|
||
<td>ww surv target 2 conc unit</td>
|
||
<td>The units of the value specified in 'ww_surv_target_2_conc', e.g., copies/L wastewater</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 2 extract</td>
|
||
<td>ww_surv_target_2_extract</td>
|
||
<td>ww surv target 2 extract</td>
|
||
<td>Measured amount of surveillance target in the nucleic acid extract that was sequenced; on a per extract unit basis, rather than on a per wastewater sample unit basis, e.g., 12000</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 2 extract unit</td>
|
||
<td>ww_surv_target_2_extract_unit</td>
|
||
<td>ww surv target 2 extract unit</td>
|
||
<td>The units of the value specified in 'ww_surv_target_2_extract', e.g., copies/microliter extract</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 2 gene</td>
|
||
<td>ww_surv_target_2_gene</td>
|
||
<td>ww surv target 2 gene</td>
|
||
<td>The name of the gene quantified for the the surveillance target specified in 'ww_surv_target_2', e.g., ORF1-ORF2 junction</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 2 known present</td>
|
||
<td>ww_surv_target_2_known_present</td>
|
||
<td>ww surv target 2 known present</td>
|
||
<td>Is genetic material of the surveillance target(s) known to the submitter to be present in this wastewater sample? Presence defined as microbiological evidence of the target organism in the wastewater sample, such as genetic- or culture-based detection.</td>
|
||
<td>['', 'no', 'yes']</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater surveillance target 2 protocol</td>
|
||
<td>ww_surv_target_2_protocol</td>
|
||
<td>ww surv target 2 protocol</td>
|
||
<td>The protocol used to quantify 'ww_surv_target_2'. Specify a reference, website, or brief description. </td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater temperature</td>
|
||
<td>ww_temperature</td>
|
||
<td>ww temperature</td>
|
||
<td>Temperature of the wastewater sample at the time of sampling in Celsius, e.g., 25.</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater total suspended solids</td>
|
||
<td>ww_total_suspended_solids</td>
|
||
<td>ww total suspended solids</td>
|
||
<td>Total concentration of solids in raw wastewater influent sample including a wide variety of material, such as silt, decaying plant and animal matter in milligrams per liter, e.g., 500.</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wastewater type</td>
|
||
<td>wastewater_type</td>
|
||
<td></td>
|
||
<td>the origin of wastewater such as human waste, rainfall, storm drains, etc.</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water content</td>
|
||
<td>water_content</td>
|
||
<td></td>
|
||
<td>water content measurement</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water content of soil</td>
|
||
<td>water_content_soil</td>
|
||
<td>water content soil</td>
|
||
<td>water content (g/g or cm3/cm3)</td>
|
||
<td>{float} [g/g|cm3/cm3]</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water content of soil method</td>
|
||
<td>water_content_soil_meth</td>
|
||
<td>water content soil meth</td>
|
||
<td>reference or method used in determining the water content of soil</td>
|
||
<td>{PMID|DOI|URL}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water current</td>
|
||
<td>water_current</td>
|
||
<td>current</td>
|
||
<td>measurement of magnitude and direction of flow within a fluid</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water cut</td>
|
||
<td>water_cut</td>
|
||
<td></td>
|
||
<td>Current amount of water (%) in a produced fluid stream; or the average of the combined streams</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water delivery frequency</td>
|
||
<td>water_frequency</td>
|
||
<td>water frequency</td>
|
||
<td>Number of water delivery events within a given period of time</td>
|
||
<td>{float}{unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water feature size</td>
|
||
<td>water_feat_size</td>
|
||
<td>water feat size</td>
|
||
<td>The size of the water feature</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water feature type</td>
|
||
<td>water_feat_type</td>
|
||
<td>water feat type</td>
|
||
<td>The type of water feature present within the building being sampled, e.g., fountain, pool, standing feature, stream, waterfall</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water pH</td>
|
||
<td>water_ph</td>
|
||
<td>water ph</td>
|
||
<td>The pH measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid</td>
|
||
<td>{float}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water production rate</td>
|
||
<td>water_prod_rate</td>
|
||
<td>water prod rate</td>
|
||
<td>Water production rates per well, e.g., 987 m3/day</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water source shared</td>
|
||
<td>water_source_shared</td>
|
||
<td></td>
|
||
<td>Other users sharing access to the same water source, e.g., multiple users, agricutural, multiple users, no sharing</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>water temperature regimen</td>
|
||
<td>water_temp_regm</td>
|
||
<td>water temp regm</td>
|
||
<td>information about treatment involving an exposure to water with varying degree of temperature; can include multiple regimens</td>
|
||
<td>{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>watering regimen</td>
|
||
<td>watering_regm</td>
|
||
<td>watering regm</td>
|
||
<td>information about treatment involving an exposure to watering frequencies; can include multiple regimens</td>
|
||
<td>{float} {unit};{period};{interval};{period}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>weekday</td>
|
||
<td>weekday</td>
|
||
<td></td>
|
||
<td>The day of the week when sampling occurred, e.g., monday, tuesday, wednesday, thursday, friday, saturday, sunday</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>weight loss in last three months</td>
|
||
<td>weight_loss_3_month</td>
|
||
<td>weight loss 3 month</td>
|
||
<td>specification of weight loss in the last three months, if yes should be further specified to include amount of weight loss</td>
|
||
<td>{boolean};{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>well identification number</td>
|
||
<td>win</td>
|
||
<td>win</td>
|
||
<td>A unique identifier of a well or wellbore. This is part of the Global Framework for Well Identification initiative which is compiled by the Professional Petroleum Data Management Association (PPDM) in an effort to improve well identification systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wet mass</td>
|
||
<td>wet_mass</td>
|
||
<td></td>
|
||
<td>measurement of wet mass</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wind direction</td>
|
||
<td>wind_direction</td>
|
||
<td></td>
|
||
<td>wind direction is the direction from which a wind originates</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>wind speed</td>
|
||
<td>wind_speed</td>
|
||
<td></td>
|
||
<td>speed of wind measured at the time of sampling</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window area/size</td>
|
||
<td>window_size</td>
|
||
<td>window size</td>
|
||
<td>The window's length and width</td>
|
||
<td>{float} {unit} x {float} {unit}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window condition</td>
|
||
<td>window_cond</td>
|
||
<td>window cond</td>
|
||
<td>The physical condition of the window at the time of sampling, e.g., damaged, needs repair, new, rupture, visible wear</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window covering</td>
|
||
<td>window_cover</td>
|
||
<td>window cover</td>
|
||
<td>The type of window covering, e.g., blinds, curtains, none</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window horizontal position</td>
|
||
<td>window_horiz_pos</td>
|
||
<td>window horiz pos</td>
|
||
<td>The horizontal position of the window on the wall, e.g., left, middle, right</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window location</td>
|
||
<td>window_loc</td>
|
||
<td>window loc</td>
|
||
<td>The relative location of the window within the room, e.g., north, south, east, west</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window material</td>
|
||
<td>window_mat</td>
|
||
<td>window mat</td>
|
||
<td>The type of material used to finish a window, e.g., clad, fiberglass, metal, vinyl, wood</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window open frequency</td>
|
||
<td>window_open_freq</td>
|
||
<td>window open freq</td>
|
||
<td>The number of times windows are opened per week</td>
|
||
<td>{integer}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window signs of water/mold</td>
|
||
<td>window_water_mold</td>
|
||
<td>window water mold</td>
|
||
<td>Signs of the presence of mold or mildew on the window, e.g., presence of mold visible, no presence of mold visible</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window status</td>
|
||
<td>window_status</td>
|
||
<td></td>
|
||
<td>Defines whether the windows were open or closed during environmental testing, e.g., closed, open</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window type</td>
|
||
<td>window_type</td>
|
||
<td></td>
|
||
<td>The type of windows, e.g., single-hung sash window, horizontal sash window, fixed window</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>window vertical position</td>
|
||
<td>window_vert_pos</td>
|
||
<td>window vert pos</td>
|
||
<td>The vertical position of the window on the wall, e.g., bottom, middle, top, low, middle, high</td>
|
||
<td>{text}</td>
|
||
</tr>
|
||
<tr>
|
||
<td>xylene</td>
|
||
<td>xylene</td>
|
||
<td></td>
|
||
<td>Concentration of xylene in the sample</td>
|
||
<td>{float} {unit}</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
|
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