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275 lines
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40 KiB
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<div class="header">
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<!-- logo -->
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<div class="res_logo"><h1 class="res_name"><a href="/biosample">BioSample</a></h1>
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<h2 class="res_tagline">National Center for Biotechnology Information</h2></div>
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<div class="search"><div class="search_form"><label for="database" class="offscreen_noflow">Search database</label><select id="database"><optgroup label="Recent"><option value="nuccore">Nucleotide</option><option value="books">Books</option><option value="pubmed" data-ac_dict="pm_related_queries_2">PubMed</option><option value="clinvar" class="last">ClinVar</option></optgroup><optgroup label="All"><option value="gquery">All Databases</option><option value="assembly">Assembly</option><option value="biocollections">Biocollections</option><option value="bioproject">BioProject</option><option value="biosample" selected="selected">BioSample</option><option value="books">Books</option><option value="clinvar">ClinVar</option><option value="cdd">Conserved Domains</option><option value="gap">dbGaP</option><option value="dbvar">dbVar</option><option value="gene">Gene</option><option value="genome">Genome</option><option value="gds">GEO DataSets</option><option value="geoprofiles">GEO Profiles</option><option value="gtr">GTR</option><option value="ipg">Identical Protein Groups</option><option value="medgen" data-ac_dict="medgen_disease_name">MedGen</option><option value="mesh" data-ac_dict="mesh_suggestions">MeSH</option><option value="nlmcatalog">NLM Catalog</option><option value="nuccore">Nucleotide</option><option value="omim">OMIM</option><option value="pmc">PMC</option><option value="protein">Protein</option><option value="proteinclusters">Protein Clusters</option><option value="protfam">Protein Family Models</option><option value="pcassay">PubChem BioAssay</option><option value="pccompound">PubChem Compound</option><option value="pcsubstance">PubChem Substance</option><option value="pubmed" data-ac_dict="pm_related_queries_2">PubMed</option><option value="snp">SNP</option><option value="sra">SRA</option><option value="structure">Structure</option><option value="taxonomy">Taxonomy</option><option value="toolkit">ToolKit</option><option value="toolkitall">ToolKitAll</option><option value="toolkitbookgh">ToolKitBookgh</option></optgroup></select><div class="nowrap"><label for="term" class="offscreen_noflow" accesskey="/">Search term</label><div class="nowrap"><input type="text" name="term" id="term" title="Search BioSample" value="" class="jig-ncbiclearbutton jig-ncbiautocomplete" data-jigconfig="isEnabled:false,disableUrl:'NcbiSearchBarAutoComplCtrl'" autocomplete="off" data-sbconfig="ds:'no',pjs:'yes',afs:'yes'" /></div><button id="search" type="submit" class="button_search nowrap" cmd="go">Search</button></div></div><ul class="searchlinks inline_list"><set></set><li><a href="/biosample/advanced">Advanced</a></li><li class="help"><a id="help" class="jig-ncbihelpwindow" target="ncbihelp" name="help" href="/books/NBK3837/">Help</a></li></ul></div>
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</script></h4><div id="send_to_menu" class="tabPopper send_to"><fieldset><legend>Choose Destination</legend><ul class="column_list"><li><input type="radio" name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.SendTo" sid="1" value="File" id="dest_File" /><label for="dest_File">File</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.SendTo" sid="2" value="AddToClipboard" id="dest_AddToClipboard" /><label for="dest_AddToClipboard">Clipboard</label></li><li><input type="radio" name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.SendTo" sid="3" value="AddToCollections" id="dest_AddToCollections" /><label for="dest_AddToCollections">Collections</label></li></ul></fieldset><div class="submenu file" id="submenu_File" style="display: none;"><p id="submenu_File_hint" class="hidden"></p><ul><li><label for="file_format">Format</label><select id="file_format" name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.FFormat" sid="1"><option value="docsum" format="text">Summary (text)</option><option value="full" format="text" selected="selected">Full (text)</option><option value="fullxml" format="text">Full XML (text)</option><option value="uilist" format="text">BioSample ID list</option><option value="acclist" format="text">Accessions List</option></select></li></ul><button name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.SendToSubmit" sid="1" class="button_apply file ncbipopper-close-button" type="submit" cmd="File">Create File</button></div><div class="submenu addtoclipboard" id="submenu_AddToClipboard" style="display: none;"><p id="submenu_AddToClipboard_hint" class="hidden"></p><button name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.SendToSubmit" sid="2" class="button_apply clipboard ncbipopper-close-button" type="submit" cmd="AddToClipboard">Add to Clipboard</button></div><div class="submenu addtocollections" id="submenu_AddToCollections" style="display: none;"><p id="submenu_AddToCollections_hint" class="hidden"></p><button name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.SendToSubmit" sid="3" class="button_apply collections ncbipopper-close-button" type="submit" cmd="AddToCollections">Add to Collections</button></div></div><div><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.FileFormat" sid="1" type="hidden" value="full" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.LastPresentation" sid="1" type="hidden" value="full" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.Presentation" sid="1" type="hidden" value="full" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.PageSize" sid="1" type="hidden" value="20" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.LastPageSize" sid="1" type="hidden" value="20" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.Sort" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.LastSort" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.FileSort" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.Format" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.LastFormat" sid="1" type="hidden" value="" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.PrevPageSize" sid="1" type="hidden" value="20" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.PrevPresentation" sid="1" type="hidden" value="full" /><input name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.BioSample_DisplayBar.PrevSort" sid="1" type="hidden" value="" /><input type="hidden" id="coll_startindex" name="CollectionStartIndex" value="1" /></div></div>
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<div><div class="rprt"><h2 class="title">Microbe sample from Listeria monocytogenes</h2><div class="docsum"><input type="hidden" id="biosample-acc" value="SAMN03358006" /><dl><dt>Identifiers</dt><dd>BioSample: SAMN03358006; Sample name: BCW_4278; SRA: SRS854227</dd></dl><dl><dt>Organism</dt><dd><a href="/taxonomy/1639" class="replace-link" ref="ncbi_uid=3358006&link_uid=1639">Listeria monocytogenes</a><br /><span id="bs_taxonomy">cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria</span></dd></dl><dl><dt>Package</dt><dd><a href="/biosample/?term="microbe 1 0"[filter]">Microbe; version 1.0</a></dd></dl><dl><dt>Attributes</dt><dd><table class="docsum"><tr><th>isolation source</th><td>missing </td></tr><tr><th>biomaterial provider</th><td>NCAUR/USDA-Todd J.Ward </td></tr><tr><th>collection date</th><td>not collected </td></tr><tr><th>strain</th><td>BCW_4278 </td></tr><tr><th>sample type</th><td>whole organism </td></tr><tr><th>geographic location</th><td>missing </td></tr></table></dd></dl><dl><dt>BioProject</dt><dd><a href="/bioproject/203445">PRJNA203445</a> Bacteria<br />Retrieve <a href="/biosample?LinkName=bioproject_biosample_all&from_uid=203445">all samples</a> from this project<br /><br /></dd></dl><dl><dt>Submission</dt><dd>University of California at Davis, Bart Weimer; 2015-02-20</dd></dl></div><div class="aux"><div class="resc"><dl class="rprtid"><dt>Accession: </dt><dd>SAMN03358006</dd><dt> ID: </dt><dd>3358006</dd></dl></div><p class="links nohighlight"><a class="dblinks" href="/bioproject?LinkName=biosample_bioproject&from_uid=3358006" ref="ordinalpos=1">BioProject</a> <a class="dblinks" href="/sra?LinkName=biosample_sra&from_uid=3358006" ref="ordinalpos=1">SRA</a> <a class="dblinks" href="/nuccore?LinkName=biosample_nuccore&from_uid=3358006" ref="ordinalpos=1">Nucleotide</a> </p></div></div></div>
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<h2 class="offscreen_noflow">Supplemental Content</h2>
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<h3>Related information</h3>
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<a name="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.Biosample_SingleItemSupl.DiscoveryDbLinks.Shutter" sid="1" href="#" class="portlet_shutter" title="Show/hide content" remembercollapsed="true" pgsec_name="discovery_db_links" id="EntrezSystem2.PEntrez.BioSample.BioSample_ResultsPanel.Biosample_SingleItemSupl.DiscoveryDbLinks.Shutter"></a>
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<a class="brieflinkpopperctrl" href="/nuccore?LinkName=biosample_nuccore&from_uid=3358006" ref="log$=recordlinks">Nucleotide</a>
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<a class="brieflinkpopperctrl" href="/assembly?LinkName=biosample_assembly&from_uid=3358006" ref="log$=recordlinks">Assembly</a>
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<a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=1" href="/portal/utils/pageresolver.fcgi?recordid=67d5d30867c23b31e0ba5a4d">Microbe sample from Listeria monocytogenes</a>
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<div class="ralinkpop offscreen_noflow">Microbe sample from Listeria monocytogenes<div class="brieflinkpopdesc"></div></div>
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<div class="tertiary">biosample</div>
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<a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=2" href="/portal/utils/pageresolver.fcgi?recordid=67d5d30767c23b31e0ba5860">Listeria monocytogenes strain BCW_4278, whole genome shotgun sequencing project</a>
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<div class="ralinkpop offscreen_noflow">Listeria monocytogenes strain BCW_4278, whole genome shotgun sequencing project<div class="brieflinkpopdesc">gi|1071674698|gb|MJPT00000000.1|MJP 0000</div></div>
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<div class="tertiary">Nucleotide</div>
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<a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=3" href="/portal/utils/pageresolver.fcgi?recordid=67d5d3052f30673f7bfcc445">Listeria monocytogenes strain BCW_4279, whole genome shotgun sequencing project</a>
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<div class="ralinkpop offscreen_noflow">Listeria monocytogenes strain BCW_4279, whole genome shotgun sequencing project<div class="brieflinkpopdesc">gi|1071679811|gb|MJPU00000000.1|MJP 0000</div></div>
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<div class="tertiary">Nucleotide</div>
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<a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=4" href="/portal/utils/pageresolver.fcgi?recordid=67d5d3022f30673f7bfcbdae">Listeria monocytogenes strain BCW_4280, whole genome shotgun sequencing project</a>
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<div class="ralinkpop offscreen_noflow">Listeria monocytogenes strain BCW_4280, whole genome shotgun sequencing project<div class="brieflinkpopdesc">gi|1071680624|gb|MJPV00000000.1|MJP 0000</div></div>
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<div class="tertiary">Nucleotide</div>
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<a class="htb ralinkpopperctrl" ref="log$=activity&linkpos=5" href="/portal/utils/pageresolver.fcgi?recordid=67d5d3002f30673f7bfcb551">Listeria monocytogenes strain BCW_4281, whole genome shotgun sequencing project</a>
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<div class="ralinkpop offscreen_noflow">Listeria monocytogenes strain BCW_4281, whole genome shotgun sequencing project<div class="brieflinkpopdesc">gi|1071684498|gb|MJPW00000000.1|MJP 0000</div></div>
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<div class="tertiary">Nucleotide</div>
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