294 lines
19 KiB
HTML
294 lines
19 KiB
HTML
<!DOCTYPE html>
|
|
<html>
|
|
<head>
|
|
<meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
|
|
<meta name="ncbi_app" content="cdd" /><meta name="ncbi_pdid" content="SARS-CoV-2 models" /><meta name="ncbi_db" content="cdd" />
|
|
<meta name="description" content="Conserved Domain Database (CDD) models and 3D protein structures relevant to SARS-CoV-2, the novel coronavirus that causes the COVID-19 pandemic. This is a resource of the National Center of Biotechnology Information (NCBI), National Library of Medicine (NLM)">
|
|
<meta name="keywords" content="proteins, functional, conserved domains, 3D structures, macromolecular structures, severe acute respiratory syndrome coronavirus 2, architecture, coronavirus, pandemic, SARS-CoV-2, COVID-19">
|
|
<title>Where to access the data?</title>
|
|
<meta name="viewport" content="width=device-width, initial-scale=1">
|
|
<link rel="apple-touch-icon" href="apple-touch-icon.png">
|
|
<link rel="icon shortcut" type="image/x-icon" href="favicon.ico">
|
|
|
|
|
|
<link rel="stylesheet" type="text/css" href="https://www.ncbi.nlm.nih.gov/Structure/shlu/jslibs/uswds/resources/uswds-not-greedy.min.css">
|
|
<link rel="stylesheet" type="text/css" href="https://www.ncbi.nlm.nih.gov/Structure/shlu/jslibs/uswds/resources/header.min.css">
|
|
<link rel="stylesheet" type="text/css" href="https://www.ncbi.nlm.nih.gov/Structure/shlu/jslibs/uswds/resources/footer.min.css">
|
|
<link rel="stylesheet" type="text/css" href="https://www.ncbi.nlm.nih.gov/Structure/shlu/jslibs/uswds/resources/form.min.css">
|
|
<link rel="stylesheet" type="text/css" href="resources/sheet.css" >
|
|
|
|
<style type="text/css">.ncbi-alerts { background: none repeat scroll 0% 0% #671414;color: #fff;padding: .231em 1.231em;}.ncbi-alerts p { color: #fff; }.ncbi-alerts a, .ncbi-alerts a:visited {color: #fff; background: none;}.ncbi-alerts p {margin: 1em 0;padding: 0 0 0 1.5em; }.ncbi-alerts p:nth-child(1) {background-image: url('/core/icons/information.png');background-position: left top;background-repeat: no-repeat }.ncbi-alerts.subclosed p:nth-child(1) {background-image: url('/core/alerts/warning.png');}.ncbi-alerts.subclosed p { padding-left: 2em;}.ncbi-alerts.pubmed, .ncbi-alerts.pubmed p {background-color: #97B0C8; color: #000;}.ncbi-alerts a { text-decoration: underline !important; }.ncbi-alerts.pubmed a, .ncbi-alerts.pubmed a:visited { color: #000; }.ncbi-alerts, .ncbi-alerts p {background-color: #97B0C8; color: #000;}.ncbi-alerts a, .ncbi-alerts a:visited { color: #000; }</style>
|
|
|
|
<style>
|
|
html {font-size: 10px;}
|
|
.waffle {font-size:0.9em }
|
|
.waffle a {
|
|
color: #0071bc!important;
|
|
text-decoration: none;
|
|
}
|
|
.waffle a:hover,
|
|
.waffle a:active {
|
|
color: #205493!important;
|
|
text-decoration: underline;
|
|
}
|
|
.waffle a:visited {
|
|
color: #4c2c92!important;
|
|
}
|
|
.readmore {display:inline-block; cursor:pointer; color: #0071bc; text-decoration: underline; font-style: italic;}
|
|
</style>
|
|
|
|
<!-- end content styles -->
|
|
|
|
</head>
|
|
<body>
|
|
<!--[if lte IE 8]>
|
|
<p class="browsehappy">You are using an <strong>outdated</strong> browser. Please <a href="http://browsehappy.com/">upgrade
|
|
your browser</a> to improve your experience.</p>
|
|
<![endif]-->
|
|
|
|
<!--indicator of global warning insertion-->
|
|
<div id="global_alert" style="display:none"></div>
|
|
|
|
<!-- Manually inserted NCBI message, as this is just an html and did not go through web services of any kind
|
|
<div class="ncbi-alerts nCoV" style="display: block; margin-bottom: 0px;"><p></p><p style="padding: 0.5em 2em; font-size: 12px; text-align: center; background: #FFB6B6 url(/core/icons/exclamation.png) no-repeat 5px center;">COVID-19 is an emerging, rapidly evolving situation.<br>Get the latest public health information from CDC: <a href="https://www.coronavirus.gov">https://www.coronavirus.gov </a>.<br>Get the latest research from NIH: <a href="https://www.nih.gov/coronavirus">https://www.nih.gov/coronavirus</a>.</p><p></p></div>
|
|
-->
|
|
<div class="us">
|
|
<a class="skipnav" href="#maincontent">Skip to main page content</a>
|
|
<header class="ncbi-page-header" role="banner">
|
|
<div class="prefix">
|
|
<span class="nih" title="National Institutes of Health">
|
|
<a href="https://www.nih.gov/" title="To NIH homepage">
|
|
<img src="https://www.ncbi.nlm.nih.gov/Structure/sparcle/uswds/resources/nih-logo-header.svg" width="82%" height="82%" alt="NIH">
|
|
</a>
|
|
</span>
|
|
<span class="nlm">
|
|
<a href="https://www.nlm.nih.gov/" title="To NLM homepage">U.S. National Library of Medicine</a>
|
|
</span>
|
|
</div>
|
|
|
|
<div class="ncbi">
|
|
<abbr class="abbr">
|
|
<a href="https://www.ncbi.nlm.nih.gov/" title="To NCBI homepage">NCBI</a>
|
|
</abbr>
|
|
<span class="name">
|
|
<a href="https://www.ncbi.nlm.nih.gov/" accesskey="1" title="To NCBI homepage">National Center for Biotechnology Information</a>
|
|
<a href="https://www.ncbi.nlm.nih.gov/guide/browsers/#ncbi_accesskeys" class="usa-sr-only" accesskey="0">Accesskeys</a>
|
|
</div>
|
|
</header>
|
|
</div>
|
|
|
|
<!-- <div class="ncbi-alerts nCoV" style="display: block; margin-bottom: 16.003px;"><p></p><p style="padding: 0.5em 2em; font-size: 12px; text-align: center; background: #FFB6B6 url(/core/icons/exclamation.png) no-repeat 5px center;">COVID-19 is an emerging, rapidly evolving situation.<br>Get the latest public health information from CDC: <a href="https://www.coronavirus.gov">https://www.coronavirus.gov </a>.<br>Get the latest research from NIH: <a href="https://www.nih.gov/coronavirus">https://www.nih.gov/coronavirus</a>.<br>Find NCBI SARS-CoV-2 literature, sequence, and clinical content: <a href="https://www.ncbi.nlm.nih.gov/sars-cov-2/">https://www.ncbi.nlm.nih.gov/sars-cov-2/</a>.</p><p></p></div> -->
|
|
|
|
<!-- Start of Real content-->
|
|
<!-- Insert static message blocks here
|
|
<div class="ncbi-alerts null" style="display: block; margin-bottom: 0px;"><p></p><p style="padding: 0.5em 2em; font-size: 12pt; text-align: center; background: #FFB6B6 url(/core/icons/exclamation.png) no-repeat 5px center;">Because of a lapse in government funding, the information on this website may not be up to date, transactions submitted via the website may not be processed, and the agency may not be able to respond to inquiries until appropriations are enacted.<br>The NIH Clinical Center (the research hospital of NIH) is open. For more details about its operating status, please visit <a href="http://cc.nih.gov">cc.nih.gov</a>.<br>Updates regarding government operating status and resumption of normal operations can be found at <a href="http://USA.gov">USA.gov</a>.</p></div>
|
|
<!-- End of message block---------------->
|
|
<div id="sl-page-content-wrap" class="us">
|
|
<div class="usa-grid-full">
|
|
|
|
|
|
<html lang="en"><head>
|
|
<br>
|
|
<title>Where to access the data</title>
|
|
<style>
|
|
body {font-family: Verdana, Arial, Helvetica, sans-serif; font-size:0.9em;}
|
|
table { border-collapse: collapse;}
|
|
table tr td { border-bottom: 1px solid #ddd;}
|
|
.largetitle {font-size:1.3em; font-weight:bold}
|
|
.title {font-size:1.1em; font-weight:bold}
|
|
</style>
|
|
</head>
|
|
<body>
|
|
|
|
<div class='largetitle'>Where to access the protein family models</div>
|
|
<ul>
|
|
<li>HMM models: <a href="https://ftp.ncbi.nih.gov/hmm/current">https://ftp.ncbi.nih.gov/hmm/current</a>
|
|
<li>BlastRules: <a href="https://ftp.ncbi.nih.gov/pub/blastrules/">https://ftp.ncbi.nih.gov/pub/blastrules/</a>
|
|
<li>Conserved domain architectures: <a href="https://ftp.ncbi.nih.gov/pub/mmdb/cdd/">https://ftp.ncbi.nih.gov/pub/mmdb/cdd/</a>
|
|
</ul>
|
|
|
|
</body>
|
|
</html>
|
|
|
|
<br>
|
|
|
|
Revised 20 October 2020
|
|
</div>
|
|
</div>
|
|
|
|
<script src="//www.ncbi.nlm.nih.gov/Structure/shlu/jslibs/slucore.min.js"></script>
|
|
<script src="//www.ncbi.nlm.nih.gov/Structure/shlu/jslibs/infobox/infobox.min.js"></script>
|
|
<script src="//www.ncbi.nlm.nih.gov/Structure/shlu/jslibs/svg/svg.min.js"></script>
|
|
<script src="js/main.min.js"></script>
|
|
<script type='text/javascript' nonce='qRzoK/xtejHsZTMH3a2Hmw'>
|
|
function posObj(sheet, id, row, col, x, y) {
|
|
var rtl = false;
|
|
var sheetElement = document.getElementById(sheet);
|
|
if (!sheetElement) {
|
|
sheetElement = document.getElementById(sheet + '-grid-container');
|
|
}
|
|
if (sheetElement) {
|
|
rtl = sheetElement.getAttribute('dir') == 'rtl';
|
|
}
|
|
var r = document.getElementById(sheet+'R'+row);
|
|
var c = document.getElementById(sheet+'C'+col);
|
|
if (r && c) {
|
|
var objElement = document.getElementById(id);
|
|
var s = objElement.style;
|
|
var t = y;
|
|
while (r && r != sheetElement) {
|
|
t += r.offsetTop;
|
|
r = r.offsetParent;
|
|
}
|
|
var offsetX = x;
|
|
while (c && c != sheetElement) {
|
|
offsetX += c.offsetLeft;
|
|
c = c.offsetParent;
|
|
}
|
|
if (rtl) {
|
|
offsetX -= objElement.offsetWidth;
|
|
}
|
|
s.left = offsetX + 'px';
|
|
s.top = t + 'px';
|
|
s.display = 'block';
|
|
s.border = '1px solid #000000';
|
|
}
|
|
};
|
|
function posObjs() {
|
|
};
|
|
posObjs();
|
|
</script>
|
|
|
|
|
|
<!-- End of Real content-->
|
|
<div class="us">
|
|
<footer class="usa-footer usa-footer-big ncbi-footer" role="contentinfo">
|
|
<div class="usa-grid">
|
|
<div class="usa-row">
|
|
<nav class="usa-footer-nav">
|
|
<ul class="usa-unstyled-list usa-width-one-fourth usa-footer-primary-content">
|
|
<li class="usa-footer-primary-link ncbi-footer-heading">
|
|
<h4>Popular</h4>
|
|
</li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/pubmed/">PubMed</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/pmc/">PMC</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/pubmedhealth/">PubMed Health</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/books/">Bookshelf</a></li>
|
|
<li><a href="https://pubchem.ncbi.nlm.nih.gov">PubChem</a></li>
|
|
<li><a href="https://blast.ncbi.nlm.nih.gov">BLAST</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/gene">Gene</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/nucleotide/">Nucleotide</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/protein/">Protein</a></li>
|
|
</ul>
|
|
<ul class="usa-unstyled-list usa-width-one-fourth usa-footer-primary-content">
|
|
<li class="usa-footer-primary-link ncbi-footer-heading"><h4>Connect</h4></li>
|
|
<li><a href="https://www.facebook.com/ncbi.nlm"><i class="fa fa-facebook fa-lg" aria-hidden="true"></i>Facebook</a></li>
|
|
<li><a href="https://twitter.com/ncbi"><i class="fa fa-twitter fa-lg" aria-hidden="true"></i>Twitter</a></li>
|
|
<li><a href="https://www.linkedin.com/company/national-center-for-biotechnology-information-ncbi-"><i class="fa fa-linkedin fa-lg" aria-hidden="true"></i>LinkedIn</a></li>
|
|
<li><a href="https://www.youtube.com/user/NCBINLM"><i class="fa fa-youtube fa-lg" aria-hidden="true"></i>YouTube</a></li>
|
|
<li><a href="https://github.com/ncbi"><i class="fa fa-github fa-lg" aria-hidden="true"></i>GitHub</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/news/announcements-list"><i class="fa fa-rss" aria-hidden="true"></i>News RSS</a></li>
|
|
<li><a href="https://ncbiinsights.ncbi.nlm.nih.gov/"><i class="fa fa-comments" aria-hidden="true"></i>Blog</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/about/contact.shtml"><i class="fa fa-envelope" aria-hidden="true"></i>Contact</a></li>
|
|
<li><a href="https://support.ncbi.nlm.nih.gov/"><i class="fa fa-question-circle" aria-hidden="true"></i>Support Center</a></li>
|
|
</ul>
|
|
<ul class="usa-unstyled-list usa-width-one-fourth usa-footer-primary-content">
|
|
<li class="usa-footer-primary-link ncbi-footer-heading"><h4>Resources</h4></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/literature.shtml">Literature</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/health.shtml">Health</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/genomes.shtml">Genomes</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/genes.shtml">Genes</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/proteins.shtml">Proteins</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/chemicals.shtml">Chemicals</a></li>
|
|
</ul>
|
|
|
|
<ul class="usa-unstyled-list usa-width-one-fourth usa-footer-primary-content">
|
|
<li class="usa-footer-primary-link ncbi-footer-heading"><h4>Actions</h4></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/submit.shtml">Submit</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/download.shtml">Download</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/learn.shtml">Learn</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/develop.shtml">Develop</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/home/analyze.shtml">Analyze</a></li>
|
|
<li><a href="https://www.ncbi.nlm.nih.gov/research/">Research</a></li>
|
|
</ul>
|
|
</nav>
|
|
|
|
<div class="usa-footer-logo usa-width-one-half">
|
|
<h3 class="ncbi"><a href="https://www.ncbi.nlm.nih.gov/">National Center for Biotechnology Information</a></h3>
|
|
<address>
|
|
<span class="h-adr">
|
|
<span class="p-street-address">8600 Rockville Pike</span>,
|
|
<span class="p-locality">Bethesda</span>
|
|
<span class="p-region"> MD</span>,
|
|
<span class="p-postal-code">20894</span>
|
|
<span class="p-country-name">USA</span>
|
|
</span>
|
|
</address>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="usa-grid">
|
|
<div class="usa-row">
|
|
<div class="usa-width-one-half">
|
|
<div class="org-section">
|
|
<a href="https://www.hhs.gov/"><img class="usa-footer-logo-img hhs-logo" src="https://www.ncbi.nlm.nih.gov/Structure/sparcle/uswds/resources/dhhs-logo-white.svg" width="82%" height="82%" alt="U.S. Department of Health & Human Services">
|
|
<span class="usa-sr-only">Department of Health and Human Services</span>
|
|
</a>
|
|
<a href="https://www.nih.gov/"><img class="usa-footer-logo-img nih-logo" src="https://www.ncbi.nlm.nih.gov/Structure/sparcle/uswds/resources/nih-logo-white.svg" width="82%" height="82%" alt="National Institutes of Health">
|
|
<span class="usa-sr-only">National Institutes of Health</span>
|
|
</a>
|
|
<a href="https://www.nlm.nih.gov/"><img class="usa-footer-logo-img nlm-logo" src="https://www.ncbi.nlm.nih.gov/Structure/sparcle/uswds/resources/nlm-logo-letters-white.svg" width="82%" height="82%" alt="National Library of Medicine">
|
|
<span class="usa-sr-only">National Library of Medicine</span>
|
|
</a>
|
|
<a href="https://www.usa.gov/"><img class="usa-footer-logo-img usagov-logo" src="https://www.ncbi.nlm.nih.gov/Structure/sparcle/uswds/resources/usagov-logo-white.svg" width="82%" height="82%" alt="USA.gov">
|
|
<span class="usa-sr-only">USA.gov</span></a>
|
|
</div>
|
|
</div>
|
|
|
|
<div class="usa-width-one-half">
|
|
<p class="about-links">
|
|
<a href="https://www.ncbi.nlm.nih.gov/home/about/">About NCBI</a>
|
|
<a href="https://www.ncbi.nlm.nih.gov/home/about/policies.shtml">Polices and Guidelines</a>
|
|
</p>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</footer>
|
|
</div>
|
|
<!--uswds header start-->
|
|
<script src="/Structure/shlu/jslibs/uswds/uswds.min.js"></script>
|
|
<script src="/Structure/shlu/jslibs/uswds/header.min.js"></script>
|
|
<!--uswds header end-->
|
|
|
|
<script src="/Structure/icn3d/lib/jquery-3.5.0.min.js"></script>
|
|
<script type="text/javascript">
|
|
$( document ).ready(function() {
|
|
$(document).on("click", ".mmdb-expand", function(e) {
|
|
e.stopImmediatePropagation();
|
|
|
|
var oriId = $(this).attr('id');
|
|
var pos = oriId.lastIndexOf('_');
|
|
var id = oriId.substr(0, pos);
|
|
|
|
$("#" + id).show();
|
|
$("#" + id + "_expand").hide();
|
|
$("#" + id + "_shrink").show();
|
|
});
|
|
|
|
$(document).on("click", ".mmdb-shrink", function(e) {
|
|
e.stopImmediatePropagation();
|
|
|
|
var oriId = $(this).attr('id');
|
|
var pos = oriId.lastIndexOf('_');
|
|
var id = oriId.substr(0, pos);
|
|
|
|
$("#" + id).hide();
|
|
$("#" + id + "_expand").show();
|
|
$("#" + id + "_shrink").hide();
|
|
});
|
|
});
|
|
</script>
|
|
</body>
|
|
</html>
|
|
|