364 lines
52 KiB
Text
364 lines
52 KiB
Text
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<title>9BKD: The structure of human Pdcd4 bound to the 40S small ribosomal subunit</title>
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<meta name="keywords" content="18S rRNA, 40S ribosomal protein S12, 40S ribosomal protein S13, 40S ribosomal protein S14, 40S ribosomal protein S15, 40S ribosomal protein S15a, 40S ribosomal protein S16, 40S ribosomal protein S17, 40S ribosomal protein S19, 40S ribosomal protein S2, 40S ribosomal protein S20, 40S ribosomal protein S21, 40S ribosomal protein S26, 40S ribosomal protein S27, 40S ribosomal protein S28, 40S ribosomal protein S29, 40S ribosomal protein S3a, 40S ribosomal protein S5, 60S ribosomal protein L41, Programmed cell death protein 4, Receptor of activated protein C kinase 1, Small ribosomal subunit protein eS10, Small ribosomal subunit protein eS24, Small ribosomal subunit protein eS25, Small ribosomal subunit protein eS30, Small ribosomal subunit protein eS4, X isoform, Small ribosomal subunit protein eS6, Small ribosomal subunit protein eS7, Small ribosomal subunit protein eS8, Small ribosomal subunit protein uS12, Small ribosomal subunit protein uS13, Small ribosomal subunit protein uS17, Small ribosomal subunit protein uS2, Small ribosomal subunit protein uS3, Small ribosomal subunit protein uS4, Ubiquitin-40S ribosomal protein S27a, MAGNESIUM ION, POTASSIUM ION, SPERMIDINE, ZINC ION, MMDB, Protein structure, protein interaction">
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<table cellspacing="0" id="mmdb_logo_links" cellpadding="0" width="100%"><tr><td><a class="ncbi_home_logo" href="/" alt="NBI HOME Logo">NCBI</a><div class="NLMLogo">National Center for<br/>Biotechnology Information</div></td><td class="titletext" align="left"><!--a href="/Structure/MMDB/mmdb.shtml"--><img border=0 src="/Structure/MMDB/strbanner.jpg" alt="9BKD - NCBI MMDB Logo"><!--/a--></td><td style="padding-bottom:1em;vertical-align:bottom"><form id="mmdbsearch" method="get" name="mmdbsearch" action="/Structure/pdb/" style="margin:0;padding:0;vertical-align: bottom;"><div class="mmdb-search-holder" style="height:100%;line-height:100%"><input accesskey="S" id="mmdb-search-box" type="search" name="uid" placeholder="Enter PDB ID or MMDB ID" value = "" aria-describedby="mmdb-search-uid" title="Enter PDB ID or MMDB ID"><button id="mmdb-search-button" class="__button mmdb-search-button" style="height:100%;line-height:100%;margin-right:-3px;" type="submit">Search</button></div></form></td></tr></table>
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<!-- StructureInfo start -->
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<section data-section="infor" id="structure-infor-section"><h1 class="structure-title" data-mmdbid="251916" data-pdbid="9BKD" id="structure-title"><a class="link title-pdbid" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=9BKD" style="font-weight:600;margin:0;">9BKD: </a><span>The structure of human Pdcd4 bound to the 40S small ribosomal subunit</span></h1>
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<div class="floatClear" id="infor-detail"><div class="reference_section" data-pmids="39117603" id="reference-section"></div>
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<div class="property_section"><form action="/Structure/mmdb/mmdbsrv.cgi" method="post" id="reloadform" name="reloadform" style="margin:0;padding:0"><input type="hidden" name="uid" value="251916"/></form><table border="0" cellpadding="4" cellspacing="4"><tr><td class="H4 pdbid-download">PDB ID: </td>
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<td><a id="pdb_id_link" class="link" href="http://www.rcsb.org/pdb/explore/explore.do?structureId=9BKD" title="PDB ID">9BKD</a><a id="download-pdb-file" class="__button" tabindex="-1" href="https://files.rcsb.org/download/9BKD.pdb" title="Download PDB file" download="9BKD.pdb">Download</a><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvStructureViewDataSetPDBdataset" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">MMDB ID: </td>
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<td style="font-weight:bold"><span class="info-item">251916</span> <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvRecordIdentifiers" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">PDB Deposition Date: </td>
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<td><span id="depositionterm" style="padding-left: 0.2em;">2024/4/27<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvDeposited" title="-click to see help"></a></span></td>
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<tr><td class="H4 property-name">Updated in MMDB: </td>
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<td class="text" nowrap><span id="mmdb_updated" style="padding-left:0.2em">2024/09</span><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvUpdatedInMMDB" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">Experimental Method: </td>
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<td class="TEXT" nowrap><div id="expmethod"><span title="electron microscopy" class="info-item">electron microscopy</span> <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvExperimentalMethod" title="-click to see help"></a></div></td>
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<tr><td class="H4 property-name">Resolution: </td>
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<td class="TEXT" id="resolution" nowrap>2.6 Å<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#SearchFieldResolution" title="-click to see help"></a></td>
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<tr><td class="H4 property-name">Source Organism: </td>
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<td class="text"><div id="taxonomy"><a id="taxword" class="link" href="//www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=9606" title="Homo sapiens">Homo sapiens</a><a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvTaxonomy" title="-click to see help"></a></div></td>
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<tr><td class="H4 property-name">Similar Structures: </td>
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<td><div id="vast-button-holder" style="width:100%;overflow:hidden;"><button class="__button" id="vast_button" type="submit">VAST+</button>
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<a class="help-img" href="/Structure/vastplus/docs/vastplus_help.html" title="-click to see help"></a></div></td>
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<tr><td colspan="2" style="text-align: center"><button class="__button" id="download_sequence" type="submit">Download sequence data</button>
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<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvDownaloadSequenceMMDB" title="-click to see help"></a></td></tr>
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</table>
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</section>
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<!-- end of StructureInfo -->
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<!-- start annotations -->
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<div align="center" id="annotblock" style="margin-top:0.8em;"><div class="formbox" id="authormethod"><div id="bublock0"><div class="biotext" id="bublock0_unit_name">Biological Unit for 9BKD: 36-meric; determined by author and by software <a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvBiologicalUnit" title="-click to see help"></a></div>
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<style>.unitschema-1{
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background-image:url("/Structure/mmdb/mmdbimage.fcgi?uid=251916&type=2&unm=1");
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}</style><section class="graph-section" data-section="graph" id="biounit-section-1"></section>
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<section class="content_block" data-section="table"><table border="1" class="bucontent"><caption class="butbl_caption">Molecular Components in 9BKD<a class="help-img" href="/Structure/MMDB/docs/mmdb_help.html#MmdbsrvMolecularComponents" title="-click to see help"></a></caption>
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<thead><tr><th>Label</th>
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<th>Count</th>
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<th>Molecule</th>
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</tr></thead>
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<tbody data-bun="1" data-type="protein" id="unit1_protein_annotation"><tr><td class="butbl_inner_tbl_tit" colspan="3"><div style="float:left">Proteins (35 molecules)</div></td></tr>
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<tr data-row="0"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-1" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_S" id="mol-legend-1-1" class="protein-molecule-label-1" data-gi="2797282797" data-molid="1" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">S</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein ES6">Small Ribosomal Subunit Protein ES6</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="1" data-molids="1" id="molgraph-p-1-1"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="1"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-2" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_G" id="mol-legend-1-2" class="protein-molecule-label-1" data-gi="2797282798" data-molid="2" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">G</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein ES7">Small Ribosomal Subunit Protein ES7</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="2" data-molids="2" id="molgraph-p-1-2"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="2"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-3" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_H" id="mol-legend-1-3" class="protein-molecule-label-1" data-gi="2797282799" data-molid="3" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">H</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S27">40S Ribosomal Protein S27</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="3" data-molids="3" id="molgraph-p-1-3"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="3"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-4" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_K" id="mol-legend-1-4" class="protein-molecule-label-1" data-gi="2797282800" data-molid="4" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">K</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S21">40S Ribosomal Protein S21</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="4" data-molids="4" id="molgraph-p-1-4"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="4"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-5" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_L" id="mol-legend-1-5" class="protein-molecule-label-1" data-gi="2797282801" data-molid="5" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">L</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S2">40S Ribosomal Protein S2</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="5" data-molids="5" id="molgraph-p-1-5"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="5"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-6" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_O" id="mol-legend-1-6" class="protein-molecule-label-1" data-gi="2797282802" data-molid="6" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">O</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S3A">40S Ribosomal Protein S3A</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="6" data-molids="6" id="molgraph-p-1-6"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="6"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-7" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_N" id="mol-legend-1-7" class="protein-molecule-label-1" data-gi="2797282803" data-molid="7" style="color:#000000;background-color:#FF6666" title="-Select icon for molecule information"><div class="protein-table-chain-label">N</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein US2">Small Ribosomal Subunit Protein US2</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="7" data-molids="7" id="molgraph-p-1-7"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="7"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-8" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_Q" id="mol-legend-1-8" class="protein-molecule-label-1" data-gi="2797282804" data-molid="8" style="color:#000000;background-color:#00FF00" title="-Select icon for molecule information"><div class="protein-table-chain-label">Q</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S26">40S Ribosomal Protein S26</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="8" data-molids="8" id="molgraph-p-1-8"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="8"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-9" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_P" id="mol-legend-1-9" class="protein-molecule-label-1" data-gi="2797282805" data-molid="9" style="color:#000000;background-color:#00FFFF" title="-Select icon for molecule information"><div class="protein-table-chain-label">P</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S14">40S Ribosomal Protein S14</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="9" data-molids="9" id="molgraph-p-1-9"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="9"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-10" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_I" id="mol-legend-1-10" class="protein-molecule-label-1" data-gi="2797282806" data-molid="10" style="color:#000000;background-color:#FFFF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">I</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S13">40S Ribosomal Protein S13</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="10" data-molids="10" id="molgraph-p-1-10"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="10"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-11" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_9" id="mol-legend-1-11" class="protein-molecule-label-1" data-gi="2797282807" data-molid="11" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">9</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="60S Ribosomal Protein L41">60S Ribosomal Protein L41</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="11" data-molids="11" id="molgraph-p-1-11"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="11"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-13" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_B" id="mol-legend-1-13" class="protein-molecule-label-1" data-gi="2797282809" data-molid="13" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">B</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein Us17">Small Ribosomal Subunit Protein Us17</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="13" data-molids="13" id="molgraph-p-1-13"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
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</tr>
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<tr data-row="12"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-14" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_C" id="mol-legend-1-14" class="protein-molecule-label-1" data-gi="2797282810" data-molid="14" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">C</div></a></div></td>
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<td>1</td>
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<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein Es4, X Isoform">Small Ribosomal Subunit Protein Es4, X Isoform</div>
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<div class="annot-img-block" data-bun="1" data-gmolid="14" data-molids="14" id="molgraph-p-1-14"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
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</div></td>
|
|
</tr>
|
|
<tr data-row="13"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-15" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_D" id="mol-legend-1-15" class="protein-molecule-label-1" data-gi="2797282811" data-molid="15" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">D</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein US4">Small Ribosomal Subunit Protein US4</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="15" data-molids="15" id="molgraph-p-1-15"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="14"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-16" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_E" id="mol-legend-1-16" class="protein-molecule-label-1" data-gi="2797282812" data-molid="16" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">E</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein Us12">Small Ribosomal Subunit Protein Us12</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="16" data-molids="16" id="molgraph-p-1-16"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="15"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-17" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_F" id="mol-legend-1-17" class="protein-molecule-label-1" data-gi="2797282813" data-molid="17" style="color:#000000;background-color:#FF6666" title="-Select icon for molecule information"><div class="protein-table-chain-label">F</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein Es30">Small Ribosomal Subunit Protein Es30</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="17" data-molids="17" id="molgraph-p-1-17"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="16"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-18" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_J" id="mol-legend-1-18" class="protein-molecule-label-1" data-gi="2797282814" data-molid="18" style="color:#000000;background-color:#00FF00" title="-Select icon for molecule information"><div class="protein-table-chain-label">J</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S15a">40S Ribosomal Protein S15a</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="18" data-molids="18" id="molgraph-p-1-18"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="17"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-19" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_R" id="mol-legend-1-19" class="protein-molecule-label-1" data-gi="2797282815" data-molid="19" style="color:#000000;background-color:#00FFFF" title="-Select icon for molecule information"><div class="protein-table-chain-label">R</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein ES8">Small Ribosomal Subunit Protein ES8</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="19" data-molids="19" id="molgraph-p-1-19"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="18"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-20" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_T" id="mol-legend-1-20" class="protein-molecule-label-1" data-gi="2797282816" data-molid="20" style="color:#000000;background-color:#FFFF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">T</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein Es24">Small Ribosomal Subunit Protein Es24</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="20" data-molids="20" id="molgraph-p-1-20"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="19"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-21" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_V" id="mol-legend-1-21" class="protein-molecule-label-1" data-gi="2797282817" data-molid="21" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">V</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S5">40S Ribosomal Protein S5</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="21" data-molids="21" id="molgraph-p-1-21"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="20"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-22" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_Y" id="mol-legend-1-22" class="protein-molecule-label-1" data-gi="2797282818" data-molid="22" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">Y</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S16">40S Ribosomal Protein S16</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="22" data-molids="22" id="molgraph-p-1-22"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="21"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-23" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_Z" id="mol-legend-1-23" class="protein-molecule-label-1" data-gi="2797282819" data-molid="23" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">Z</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein US3">Small Ribosomal Subunit Protein US3</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="23" data-molids="23" id="molgraph-p-1-23"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="22"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-24" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_a" id="mol-legend-1-24" class="protein-molecule-label-1" data-gi="2797282820" data-molid="24" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">a</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein Es10">Small Ribosomal Subunit Protein Es10</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="24" data-molids="24" id="molgraph-p-1-24"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="23"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-25" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_b" id="mol-legend-1-25" class="protein-molecule-label-1" data-gi="2797282821" data-molid="25" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">b</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S15">40S Ribosomal Protein S15</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="25" data-molids="25" id="molgraph-p-1-25"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="24"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-26" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_c" id="mol-legend-1-26" class="protein-molecule-label-1" data-gi="2797282822" data-molid="26" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">c</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Receptor of Activated Protein C Kinase 1">Receptor of Activated Protein C Kinase 1</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="26" data-molids="26" id="molgraph-p-1-26"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="25"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-27" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_d" id="mol-legend-1-27" class="protein-molecule-label-1" data-gi="2797282823" data-molid="27" style="color:#000000;background-color:#FF6666" title="-Select icon for molecule information"><div class="protein-table-chain-label">d</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S19">40S Ribosomal Protein S19</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="27" data-molids="27" id="molgraph-p-1-27"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="26"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-28" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_e" id="mol-legend-1-28" class="protein-molecule-label-1" data-gi="2797282824" data-molid="28" style="color:#000000;background-color:#00FF00" title="-Select icon for molecule information"><div class="protein-table-chain-label">e</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein Es25">Small Ribosomal Subunit Protein Es25</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="28" data-molids="28" id="molgraph-p-1-28"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="27"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-29" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_f" id="mol-legend-1-29" class="protein-molecule-label-1" data-gi="2797282825" data-molid="29" style="color:#000000;background-color:#00FFFF" title="-Select icon for molecule information"><div class="protein-table-chain-label">f</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Small Ribosomal Subunit Protein Us13">Small Ribosomal Subunit Protein Us13</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="29" data-molids="29" id="molgraph-p-1-29"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="28"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-30" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_i" id="mol-legend-1-30" class="protein-molecule-label-1" data-gi="2797282826" data-molid="30" style="color:#000000;background-color:#FFFF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">i</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S29">40S Ribosomal Protein S29</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="30" data-molids="30" id="molgraph-p-1-30"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="29"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-31" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_k" id="mol-legend-1-31" class="protein-molecule-label-1" data-gi="2797282827" data-molid="31" style="color:#FFFFFF;background-color:#FF00FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">k</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Ubiquitin-40s Ribosomal Protein S27a">Ubiquitin-40s Ribosomal Protein S27a</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="31" data-molids="31" id="molgraph-p-1-31"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="30"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-32" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_m" id="mol-legend-1-32" class="protein-molecule-label-1" data-gi="2797282828" data-molid="32" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">m</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S12">40S Ribosomal Protein S12</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="32" data-molids="32" id="molgraph-p-1-32"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="31"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-33" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_n" id="mol-legend-1-33" class="protein-molecule-label-1" data-gi="2797282829" data-molid="33" style="color:#FFFFFF;background-color:#996633" title="-Select icon for molecule information"><div class="protein-table-chain-label">n</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S28">40S Ribosomal Protein S28</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="33" data-molids="33" id="molgraph-p-1-33"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="32"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-34" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_M" id="mol-legend-1-34" class="protein-molecule-label-1" data-gi="2797282830" data-molid="34" style="color:#000000;background-color:#00FF99" title="-Select icon for molecule information"><div class="protein-table-chain-label">M</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S17">40S Ribosomal Protein S17</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="34" data-molids="34" id="molgraph-p-1-34"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="33"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-35" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_h" id="mol-legend-1-35" class="protein-molecule-label-1" data-gi="2797282831" data-molid="35" style="color:#000000;background-color:#CCCCCC" title="-Select icon for molecule information"><div class="protein-table-chain-label">h</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="40S Ribosomal Protein S20">40S Ribosomal Protein S20</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="35" data-molids="35" id="molgraph-p-1-35"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
<tr data-row="34"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-36" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/protein/9BKD_U" id="mol-legend-1-36" class="protein-molecule-label-1" data-gi="2797282832" data-molid="36" style="color:#000000;background-color:#FF9900" title="-Select icon for molecule information"><div class="protein-table-chain-label">U</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="Programmed Cell Death Protein 4">Programmed Cell Death Protein 4</div>
|
|
<div class="gene-symbol">(Gene symbol: <a href="//www.ncbi.nlm.nih.gov/gene/27250" alt="programmed cell death 4">PDCD4</a>)</div><div class="annot-img-block" data-bun="1" data-gmolid="36" data-molids="36" id="molgraph-p-1-36"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
</tbody>
|
|
<tbody data-bun="1" data-type="nucleotide" id="unit1_nucleotide_annotation"><tr><td class="butbl_inner_tbl_tit" colspan="3"><div style="float:left">Nucleotide(1 molecule)</div></td></tr>
|
|
<tr data-row="0"><td class="molecule-label-cell"><div class="identical-molecules floatClear" id="chain-list-1-12" style="text-align: center;"><a href="//www.ncbi.nlm.nih.gov/nuccore/9BKD_A" id="mol-legend-1-12" class="drna-molecule-label" data-gi="2797282808" data-molid="12" style="color:#FFFFFF;background-color:#0000FF" title="-Select icon for molecule information"><div class="protein-table-chain-label">A</div></a></div></td>
|
|
<td>1</td>
|
|
<td class="annotation-cell"><div class="graph-annot"><div class="molecule-name" title="18S rRNA">18S rRNA</div>
|
|
<div class="annot-img-block" data-bun="1" data-gmolid="12" data-molids="12" id="molgraph-n-1-12"><img alt="Molecule annotation" src="/Structure/mmdb/images/bigLoader.gif"></div>
|
|
</div></td>
|
|
</tr>
|
|
</tbody>
|
|
<tbody data-bun="1" data-type="chemical" id="unit1_chemical_annotation"><tr><td class="butbl_inner_tbl_tit" colspan="3"><div style="float:left">Chemicals and Non-standard biopolymers (111 molecules)</div></td></tr>
|
|
<tr><td data-row="0"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-1" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="37,145,147" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111103">1</a></span></div></td>
|
|
<td><div class="chem-label">3</div></td>
|
|
<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="498111103"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111103" title="ZINC ION">ZINC ION</a></span><span class="chem-image-holder" title="ZINC ION"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111103"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=498111103" alt="ZINC ION"></a></span></div></td>
|
|
</tr>
|
|
<tr><td data-row="1"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-2" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="38,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,146" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111104">2</a></span></div></td>
|
|
<td><div class="chem-label">19</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="498111104"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111104" title="POTASSIUM ION">POTASSIUM ION</a></span><span class="chem-image-holder" title="POTASSIUM ION"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111104"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=498111104" alt="POTASSIUM ION"></a></span></div></td>
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</tr>
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<tr><td data-row="2"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-3" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="39,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,144" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111105">3</a></span></div></td>
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<td><div class="chem-label">88</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="498111105"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111105" title="MAGNESIUM ION">MAGNESIUM ION</a></span><span class="chem-image-holder" title="MAGNESIUM ION"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111105"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=498111105" alt="MAGNESIUM ION"></a></span></div></td>
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</tr>
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<tr><td data-row="3"><div class="chem-label-box"><span class="chemical-molecule-label" id="mol-chem-legend-1-4" title="-Select icon for PubChem compound information"><a class="link chem_label" data-molids="143" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111106">4</a></span></div></td>
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<td><div class="chem-label">1</div></td>
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<td><div class="chem-name-thumb floatClear"><span class="chem-name" data-sid="498111106"><a class="link mmdb-chem-name" href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111106" title="SPERMIDINE">SPERMIDINE</a></span><span class="chem-image-holder" title="SPERMIDINE"><a href="//pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=498111106"><img type="thumb" class="chemthumb" align="absmiddle" src="//pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=498111106" alt="SPERMIDINE"></a></span></div></td>
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</table>
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<div style="margin:0.5em 1em;text-align:left; font-size:85%;">* Click molecule labels to explore molecular sequence information.<br/></div>
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</section>
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</div></div></div>
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<div align="left" class="citing"><hr width="85%"/><div style="font-weight:bold">Citing MMDB</div><div class="citref" style="padding:0.2em;"><img style="border:0;text-align:left;height:15px;width:15px;margin-right:0.2em" src="//pubchem.ncbi.nlm.nih.gov/images/PubMed.gif"> <span style="color:#444"> Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. </span> <cite><a class="link" href="//www.ncbi.nlm.nih.gov/pubmed/24319143">"<span style="font-style:italic;"> MMDB and VAST+: tracking structural similarities between macromolecular complexes. <b style="font-size:90%">Nucleic Acids Res. 2014 Jan; 42(Database issue)</b>:D297-303</span></a></cite></div></div>
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