229 lines
8.6 KiB
Text
229 lines
8.6 KiB
Text
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "https://www.w3.org/TR/html4/loose.dtd">
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<html>
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<head>
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<meta http-equiv="content-type" content="text/html; charset=utf-8">
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<title>PIE the search</title>
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<link href="pie_home.css" rel="stylesheet" type="text/css">
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<script src="https://code.jquery.com/jquery-1.12.4.min.js" integrity="sha256-ZosEbRLbNQzLpnKIkEdrPv7lOy9C27hHQ+Xp8a4MxAQ=" crossorigin="anonymous"></script>
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<script src="https://code.jquery.com/ui/1.12.0/jquery-ui.min.js" integrity="sha256-eGE6blurk5sHj+rmkfsGYeKyZx3M4bG+ZlFyA7Kns7E=" crossorigin="anonymous"></script>
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</head>
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<body>
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<div id="header_wrapper">
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<div id="header">
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<div id="header_left">
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<a href="https://www.ncbi.nlm.nih.gov/guide/"><img alt="" src="images/ncbi_logo.gif"></a>
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</div>
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<div id="header_right">
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<a href="tutorial.html">Tutorial</a> |
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<a href="about.html">About</a>
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</div>
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</div>
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</div>
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<div id="main_wrapper">
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<div id="main">
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<div>
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<span id="top_comment">Searching PubMed literature for protein interaction information</span>
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</div>
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<div id="search_box" class="search_bottom">
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<form action="search.cgi" method="get" id="main_form">
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<input type="text" style="width:420px;font:17px arial;" id="search" name=query>
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<button class="button_search" onclick="if ($('#search').val().length==0) {alert('Please, enter a query');$('#search').focus();return false;} else {$('#main_form').submit();}">Search</button>
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<button class="button_clear" onclick="$('#search').val('');$('#search_area').val('');$('#geneId').val('');$('#geneRecommendResult').html('');return false;">Clear</button>
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</div>
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<div style="width:100%;text-align:right;font-size:12px;font-family:Tahoma;">
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<span style="font-size:8pt;color:#7A7A7A;">Sorted by <input type="radio" name="pflag" value="1" checked> Score <input type="radio" name="pflag" value="0"> Date</span>
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<a href="#" onclick="$('#gene_recommender').hide();$('#search_builder').slideToggle();return false;">Advanced Search</a>|<a href="#" onclick="$('#search_builder').hide();$('#gene_recommender').slideToggle();return false;">Gene ID Search</a>
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</form>
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</div>
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<div id="search_builder" style="display:none;">
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<textarea id="search_area" style="background:#eee;color:#888;width:750px;font-family:Tahoma;border:1px solid #888;" rows="5" ></textarea>
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Search Builder:
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<select id="field">
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<option value="All Fields" selected="selected">All Fields</option>
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<option value="Author">Author</option>
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<option value="Journal">Journal</option>
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<option value="MeSH Terms">MeSH Terms</option>
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<option value="Publication Date">Publication Date</option>
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<option value="Title">Title</option>
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<option value="Title/Abstract">Title/Abstract</option>
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</select>
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<span id="textinput" style="display:">
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<input type="text" size="35" id="term">
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</span>
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<span id="dateinput" style="display: none; ">
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<input type="text" id="DateFrom" size="10" maxlength="10" class="blurred">
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<label for="DateTo"> to </label>
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<input type="text" id="DateTo" value="present" size="10" maxlength="10" class="blurred">
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</span>
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<select id="opCombo">
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<option value="AND">AND</option>
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<option value="OR">OR</option>
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<option value="NOT">NOT</option>
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</select>
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<input type="button" value=" Add To Search Box " id="add">
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<input type="button" value=" Hide Advanced Search " onclick="$('#search_builder').slideUp();">
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<div id="dateinputtext" style="display:none;">Format: YYYY/MM/DD. Month and days are optional</div>
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</div>
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<div id="gene_recommender" style="display:none;" class="dialog">
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Gene ID <input type="text" size="30" id="geneId">
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<input type="button" value=" Recommend " id="geneRecommend">
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<img alt="" src="images/ajax-loader.gif" id="loading" style="display:none">
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<div id="geneRecommendResult"></div>
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</div>
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</div>
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</div>
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<center>
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<table width=670>
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<tr><td align="left" colspan=2>
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<span style="font-family:Arial;font-size:10pt;font-weight:bold;color:red;">
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PIE <i>the search</i> is no longer supported and will be retired soon.
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</span>
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</td></tr>
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<tr><td align="left" colspan=2>
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<br><br>
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<span style="font-family:Arial;font-size:10pt;">
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See <a href="tutorial.html">Tutorial</a> for how to use PIE <i>the search</i>.<br>
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Queries can be written exactly as in <a href="https://www.ncbi.nlm.nih.gov/pubmed/" target="_blank">PubMed</a>. For detailed search, use the 'Advanced Search' menu above
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(See the <a href="https://www.ncbi.nlm.nih.gov/books/NBK3827/" target="_blank">PubMed</a> or <a href="https://www.ncbi.nlm.nih.gov/books/NBK3837/" target="_blank">Entrez</a> help for more searching options).
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</span>
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</td></tr>
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<tr><td align="left" colspan=2>
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<br><br>
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<span style="font-family:Arial;font-size:11pt;font-weight:bold;">
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PIE <i>the search</i> provides<br>
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</span>
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<ul>
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<span style="font-family:Arial;font-size:11pt;font-weight:normal;">
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<li>protein interaction information (PPI) articles for biologists: <b><i>PPI articles located first</i></b></li>
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<li>baseline system performance for bio-text mining researchers: <b><i>a competition winning approach</i></b></li>
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<li>a compact PubMed-search environment for PubMed users: <b><i>showing all info in one page</i></b></li>
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</span>
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</ul>
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</td></tr>
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<!--
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<tr><td align="left" colspan=2>
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<br>
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<span style="font-size:11pt;"><b>Supplementary material: </b><span><a href="PIE_supplement.pdf"><span style="font-size:9pt;">Click Here</span></a><br>
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</td></tr>
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-->
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<tr><td align="left" colspan=2>
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<br>
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<span style="font-family:Arial;font-size:9pt;color:#7A7A7A;">
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<i>Current PUBMED version: May. 8, 2021</i><br>
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<i>Please, contact us if you find any problems. Thank you.</i>
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</span>
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</td></tr>
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</table>
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</center>
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<br><br>
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<div id="footer_wrapper">
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<div id="footer">
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<div class="comment">
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PIE <i>the search</i>: <a href="https://www.ncbi.nlm.nih.gov/IRET/PIE">https://www.ncbi.nlm.nih.gov/IRET/PIE</a> |
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Contact us: <a href="mailto:sun.kim@nih.gov">sun.kim@nih.gov</a>
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</div>
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<div id="footer-contents-left">
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<a href="https://www.ncbi.nlm.nih.gov/home/about/policies.shtml">Policies and Guidelines</a>
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</div>
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</div>
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</div>
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</body>
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</html>
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<script type="text/javascript">
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function clearSearchBuilder()
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{
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$('#DateFrom').val("");
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$('#DateTo').val("present");
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$('#DateTo').css("color", "#999999");
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$('#DateTo').focus(function() {
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$('#DateTo').val("");
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$('#DateTo').css("color","#000");
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});
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$('#term').val("");
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}
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$(function() {
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$('#field').change(function() {
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if ($('#field').val()=="Publication Date") {
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$('#dateinput').show();
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$('#dateinputtext').show();
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$('#textinput').hide();
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} else {
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$('#dateinput').hide();
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$('#dateinputtext').hide();
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$('#textinput').show();
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}
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clearSearchBuilder();
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});
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$('#add').click(function() {
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var field = $('#field').val();
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var op = $('#opCombo').val();
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var term;
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var dateFrom, dateTo;
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var searchValue = $('#search').val();
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var indexTerm = $('#term').val();
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var q = (field == 'Author' || field == 'First Author' || field == 'Last Author') ? '': '"';
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indexTerm = indexTerm.replace(/^\s+/,'').replace(/\s+$/,'');
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searchValue = searchValue.replace(/^\s+/,'').replace(/\s+$/,'');
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if (field == "Publication Date") {
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dateFrom = $('#DateFrom').val().replace(/^\s+/,'').replace(/\s+$/,'');
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dateTo = $('#DateTo').val().replace(/^\s+/,'').replace(/\s+$/,'');
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if (dateFrom == "present") dateFrom = "3000";
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if (dateTo == "present") dateTo = "3000";
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term = q + dateFrom + q + "[" + field + "] : " + q + dateTo + q + "[" + field + "]";
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} else {
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term = q + indexTerm + q + "[" + field + "]";
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}
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if (searchValue == "") {
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searchValue = term;
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} else {
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searchValue = "(" + searchValue + ") " + op + " " + term;
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}
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$('#search').val(searchValue);
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$('#search_area').val(searchValue);
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});
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$('#search_area').attr("readonly", "true");
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$("#geneRecommend").click(function() {
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$.get("gene.cgi", {geneid: $('#geneId').val()}, function(data) {
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$("#geneRecommendResult").html(data);
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recommendQuery();
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$("#geneRecommendResult input[type='checkbox']").change(recommendQuery);
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});
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});
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$("#loading").ajaxStart(function() {$(this).show();});
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$("#loading").ajaxStop(function() {$(this).hide();});
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});
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function recommendQuery() {
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var str = "";
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$("#geneRecommendResult input[type='checkbox']:checked").each(function(){
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if (str.length > 0) {
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str = str + " OR ";
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}
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str = str + '"' + $(this).val() + '"';
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});
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$("#search").val(str);
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}
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</script>
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