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<div class="title">CSeq_loc_CI Class Reference<div class="ingroups"><a class="el" href="group__OBJECTS.html">OBJECTS</a> » <a class="el" href="group__OBJECTS__Seqloc.html">Seq-loc Management</a></div></div> </div>
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<a class="el" href = "https://www.ncbi.nlm.nih.gov/toolkitbookgh/?term=CSeq_loc_CI">Search Toolkit Book for <i>CSeq_loc_CI</i></a>
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</p>
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<p>Seq-loc iterator class – iterates all intervals from a seq-loc in the correct order.
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<a href="classCSeq__loc__CI.html#details">More...</a></p>
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<p><code>#include <<a class="el" href="Seq__loc_8hpp_source.html">objects/seqloc/Seq_loc.hpp</a>></code></p>
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<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for CSeq_loc_CI:</div>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
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Public Types</h2></td></tr>
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<tr class="memitem:ga27da54031ec4b2d3a8e0a56105a46d36"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga27da54031ec4b2d3a8e0a56105a46d36">EEmptyFlag</a> { <a class="el" href="group__OBJECTS__Seqloc.html#gga27da54031ec4b2d3a8e0a56105a46d36a7fb4fea15901f4c4cf68664a7640d3a2">eEmpty_Skip</a>
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, <a class="el" href="group__OBJECTS__Seqloc.html#gga27da54031ec4b2d3a8e0a56105a46d36a609b3a743218e9d52c9101b1806b192c">eEmpty_Allow</a>
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}</td></tr>
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<tr class="memdesc:ga27da54031ec4b2d3a8e0a56105a46d36"><td class="mdescLeft"> </td><td class="mdescRight">Options for empty locations processing. <a href="group__OBJECTS__Seqloc.html#ga27da54031ec4b2d3a8e0a56105a46d36">More...</a><br /></td></tr>
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<tr class="separator:ga27da54031ec4b2d3a8e0a56105a46d36"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga05cc8b3f2e009f72302c1abfbb240411"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga05cc8b3f2e009f72302c1abfbb240411">ESeqLocOrder</a> { <a class="el" href="group__OBJECTS__Seqloc.html#gga05cc8b3f2e009f72302c1abfbb240411a1aaa0e08f019d1e356f303cfd29637d8">eOrder_Positional</a>
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, <a class="el" href="group__OBJECTS__Seqloc.html#gga05cc8b3f2e009f72302c1abfbb240411a06deee35ed7c64c5a11347f10cb26cbc">eOrder_Biological</a>
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}</td></tr>
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<tr class="separator:ga05cc8b3f2e009f72302c1abfbb240411"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga545c5cb048b1583e69c9aedcff243978"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__OBJECTS__Seqloc.html#ga1a85388473ab3be993c0ddeb86303e08">CSeq_loc::TRange</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga545c5cb048b1583e69c9aedcff243978">TRange</a></td></tr>
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<tr class="separator:ga545c5cb048b1583e69c9aedcff243978"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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Public Member Functions</h2></td></tr>
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<tr class="memitem:ga0f63e814e47e682cf74d91033f3a8403"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga0f63e814e47e682cf74d91033f3a8403">CSeq_loc_CI</a> (void)</td></tr>
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<tr class="memdesc:ga0f63e814e47e682cf74d91033f3a8403"><td class="mdescLeft"> </td><td class="mdescRight">constructors <a href="group__OBJECTS__Seqloc.html#ga0f63e814e47e682cf74d91033f3a8403">More...</a><br /></td></tr>
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<tr class="separator:ga0f63e814e47e682cf74d91033f3a8403"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9a69df9bc56b785381f0c534d013b89c"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga9a69df9bc56b785381f0c534d013b89c">CSeq_loc_CI</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc.html">CSeq_loc</a> &loc, <a class="el" href="group__OBJECTS__Seqloc.html#ga27da54031ec4b2d3a8e0a56105a46d36">EEmptyFlag</a> empty_flag=<a class="el" href="group__OBJECTS__Seqloc.html#gga27da54031ec4b2d3a8e0a56105a46d36a7fb4fea15901f4c4cf68664a7640d3a2">eEmpty_Skip</a>, <a class="el" href="group__OBJECTS__Seqloc.html#ga05cc8b3f2e009f72302c1abfbb240411">ESeqLocOrder</a> order=<a class="el" href="group__OBJECTS__Seqloc.html#gga05cc8b3f2e009f72302c1abfbb240411a06deee35ed7c64c5a11347f10cb26cbc">eOrder_Biological</a>)</td></tr>
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<tr class="separator:ga9a69df9bc56b785381f0c534d013b89c"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gacb4ad2e1a9167c3ecdf6e67545b15329"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gacb4ad2e1a9167c3ecdf6e67545b15329">CSeq_loc_CI</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> &iter, size_t pos)</td></tr>
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<tr class="memdesc:gacb4ad2e1a9167c3ecdf6e67545b15329"><td class="mdescLeft"> </td><td class="mdescRight">construct iterator at a different position in the same location <a href="group__OBJECTS__Seqloc.html#gacb4ad2e1a9167c3ecdf6e67545b15329">More...</a><br /></td></tr>
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<tr class="separator:gacb4ad2e1a9167c3ecdf6e67545b15329"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gafbe515576da465a67b319b2bed535e1b"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gafbe515576da465a67b319b2bed535e1b">~CSeq_loc_CI</a> (void)</td></tr>
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<tr class="memdesc:gafbe515576da465a67b319b2bed535e1b"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="group__OBJECTS__Seqloc.html#gafbe515576da465a67b319b2bed535e1b">More...</a><br /></td></tr>
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<tr class="separator:gafbe515576da465a67b319b2bed535e1b"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gac75bff10bf66169d26004c99580b97dc"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gac75bff10bf66169d26004c99580b97dc">CSeq_loc_CI</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> &iter)</td></tr>
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<tr class="separator:gac75bff10bf66169d26004c99580b97dc"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga257a7fe1245ae4a4c2bb44722ee43d47"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga257a7fe1245ae4a4c2bb44722ee43d47">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> &iter)</td></tr>
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<tr class="separator:ga257a7fe1245ae4a4c2bb44722ee43d47"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga17f1d8895587eacdd51f360e3fb0e3eb"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga17f1d8895587eacdd51f360e3fb0e3eb">operator++</a> (void)</td></tr>
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<tr class="separator:ga17f1d8895587eacdd51f360e3fb0e3eb"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga0bdafb417f090cab7560ef47243f1a97"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga0bdafb417f090cab7560ef47243f1a97">DECLARE_OPERATOR_BOOL</a> (<a class="el" href="group__OBJECTS__Seqloc.html#ga0e4ab11d1d227e8c6d017aa898e9f9d8">x_IsValid</a>())</td></tr>
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<tr class="separator:ga0bdafb417f090cab7560ef47243f1a97"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga90966c592e30dd21d89a7c9b09c2b984"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga90966c592e30dd21d89a7c9b09c2b984">operator==</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> &iter) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga90966c592e30dd21d89a7c9b09c2b984"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gac809acfd04eafce141680df84830662c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gac809acfd04eafce141680df84830662c">operator!=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> &iter) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:gac809acfd04eafce141680df84830662c"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga838cda0e1f998db10732f4fa2d4192e5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga838cda0e1f998db10732f4fa2d4192e5">IsInBond</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga838cda0e1f998db10732f4fa2d4192e5"><td class="mdescLeft"> </td><td class="mdescRight">Location of type equiv define set of equivalent locations. <a href="group__OBJECTS__Seqloc.html#ga838cda0e1f998db10732f4fa2d4192e5">More...</a><br /></td></tr>
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<tr class="separator:ga838cda0e1f998db10732f4fa2d4192e5"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga032926f2c7619385d5b51bd9fe6bcf88"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga032926f2c7619385d5b51bd9fe6bcf88">IsBondA</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga032926f2c7619385d5b51bd9fe6bcf88"><td class="mdescLeft"> </td><td class="mdescRight">Return true if current position is A part of a bond. <a href="group__OBJECTS__Seqloc.html#ga032926f2c7619385d5b51bd9fe6bcf88">More...</a><br /></td></tr>
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<tr class="separator:ga032926f2c7619385d5b51bd9fe6bcf88"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gab65e839d864bb75199780a8a56cbd963"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gab65e839d864bb75199780a8a56cbd963">IsBondB</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gab65e839d864bb75199780a8a56cbd963"><td class="mdescLeft"> </td><td class="mdescRight">Return true if current position is B part of a bond. <a href="group__OBJECTS__Seqloc.html#gab65e839d864bb75199780a8a56cbd963">More...</a><br /></td></tr>
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<tr class="separator:gab65e839d864bb75199780a8a56cbd963"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga57db0fe0a62f32a7252d4ca56d3ab950"><td class="memItemLeft" align="right" valign="top">pair< <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a>, <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga57db0fe0a62f32a7252d4ca56d3ab950">GetBondRange</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga57db0fe0a62f32a7252d4ca56d3ab950"><td class="mdescLeft"> </td><td class="mdescRight">Return iterators that cover bond of current position result.first is the first segment in the equiv set result.second is the first segment after the equiv set. <a href="group__OBJECTS__Seqloc.html#ga57db0fe0a62f32a7252d4ca56d3ab950">More...</a><br /></td></tr>
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<tr class="memitem:ga5e0545e1be5f9c1324a59260cbb1e07a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga5e0545e1be5f9c1324a59260cbb1e07a">HasEquivSets</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5e0545e1be5f9c1324a59260cbb1e07a"><td class="mdescLeft"> </td><td class="mdescRight">Return true if location has equiv parts. <a href="group__OBJECTS__Seqloc.html#ga5e0545e1be5f9c1324a59260cbb1e07a">More...</a><br /></td></tr>
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<tr class="separator:ga5e0545e1be5f9c1324a59260cbb1e07a"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga3489653854d303397aee42a96a4cb5b5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga3489653854d303397aee42a96a4cb5b5">IsInEquivSet</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga3489653854d303397aee42a96a4cb5b5"><td class="mdescLeft"> </td><td class="mdescRight">Return true if current position is in some equiv part. <a href="group__OBJECTS__Seqloc.html#ga3489653854d303397aee42a96a4cb5b5">More...</a><br /></td></tr>
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<tr class="separator:ga3489653854d303397aee42a96a4cb5b5"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga07a88c3cb22047dc23c5ee77bc034579"><td class="memItemLeft" align="right" valign="top">size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga07a88c3cb22047dc23c5ee77bc034579">GetEquivSetsCount</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga07a88c3cb22047dc23c5ee77bc034579"><td class="mdescLeft"> </td><td class="mdescRight">Return number of recursuve equiv parts current position in. <a href="group__OBJECTS__Seqloc.html#ga07a88c3cb22047dc23c5ee77bc034579">More...</a><br /></td></tr>
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<tr class="separator:ga07a88c3cb22047dc23c5ee77bc034579"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaa0674f1a1b4b5b7e94150e49633263fb"><td class="memItemLeft" align="right" valign="top">pair< <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a>, <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gaa0674f1a1b4b5b7e94150e49633263fb">GetEquivSetRange</a> (size_t level=0) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaa0674f1a1b4b5b7e94150e49633263fb"><td class="mdescLeft"> </td><td class="mdescRight">Return iterators that cover equiv set of current position result.first is the first segment in the equiv set result.second is the first segment after the equiv set level specify equiv set if there are more than one of them level = 0 is the smallest equiv set (innermost) <a href="group__OBJECTS__Seqloc.html#gaa0674f1a1b4b5b7e94150e49633263fb">More...</a><br /></td></tr>
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<tr class="separator:gaa0674f1a1b4b5b7e94150e49633263fb"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gac381d5dacf1f4024c846e0666a06feff"><td class="memItemLeft" align="right" valign="top">pair< <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a>, <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gac381d5dacf1f4024c846e0666a06feff">GetEquivPartRange</a> (size_t level=0) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gac381d5dacf1f4024c846e0666a06feff"><td class="mdescLeft"> </td><td class="mdescRight">Return iterators that cover equiv part of current position result.first is the first segment in the equiv part result.second is the first segment after the equiv part level specify equiv set if there are more than one of them level = 0 is the smallest equiv set (innermost) <a href="group__OBJECTS__Seqloc.html#gac381d5dacf1f4024c846e0666a06feff">More...</a><br /></td></tr>
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<tr class="separator:gac381d5dacf1f4024c846e0666a06feff"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gad828363f60529d880c174b93d87bb7db"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__id.html">CSeq_id</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gad828363f60529d880c174b93d87bb7db">GetSeq_id</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gad828363f60529d880c174b93d87bb7db"><td class="mdescLeft"> </td><td class="mdescRight">Get seq_id of the current location. <a href="group__OBJECTS__Seqloc.html#gad828363f60529d880c174b93d87bb7db">More...</a><br /></td></tr>
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<tr class="separator:gad828363f60529d880c174b93d87bb7db"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga64100a68a65c677d10df8e57bbcb2aeb"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCSeq__id__Handle.html">CSeq_id_Handle</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga64100a68a65c677d10df8e57bbcb2aeb">GetSeq_id_Handle</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga64100a68a65c677d10df8e57bbcb2aeb"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gab2e3008ad6020b5797de38e3c8972ed3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__OBJECTS__Seqloc.html#ga545c5cb048b1583e69c9aedcff243978">TRange</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gab2e3008ad6020b5797de38e3c8972ed3">GetRange</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gab2e3008ad6020b5797de38e3c8972ed3"><td class="mdescLeft"> </td><td class="mdescRight">Get the range. <a href="group__OBJECTS__Seqloc.html#gab2e3008ad6020b5797de38e3c8972ed3">More...</a><br /></td></tr>
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<tr class="separator:gab2e3008ad6020b5797de38e3c8972ed3"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga610d73d3b298508f4d05541643583cab"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga610d73d3b298508f4d05541643583cab">IsSetStrand</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga610d73d3b298508f4d05541643583cab"><td class="mdescLeft"> </td><td class="mdescRight">Get strand. <a href="group__OBJECTS__Seqloc.html#ga610d73d3b298508f4d05541643583cab">More...</a><br /></td></tr>
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<tr class="separator:ga610d73d3b298508f4d05541643583cab"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gacfd4f794380164912ffde946659ef011"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Seqloc.html#ga2d4d48fde1d3f62563eac193a3b5afae">ENa_strand</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gacfd4f794380164912ffde946659ef011">GetStrand</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:gacfd4f794380164912ffde946659ef011"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga595ab79d5d290fb3d33db47295029a41"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCConstRef.html">CConstRef</a>< <a class="el" href="classCSeq__loc.html">CSeq_loc</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga595ab79d5d290fb3d33db47295029a41">GetRangeAsSeq_loc</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga595ab79d5d290fb3d33db47295029a41"><td class="mdescLeft"> </td><td class="mdescRight">Get seq-loc for the current iterator position. <a href="group__OBJECTS__Seqloc.html#ga595ab79d5d290fb3d33db47295029a41">More...</a><br /></td></tr>
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<tr class="separator:ga595ab79d5d290fb3d33db47295029a41"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9c5c359d6123ef2b8c89e4be8dbdc230"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc.html">CSeq_loc</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga9c5c359d6123ef2b8c89e4be8dbdc230">GetEmbeddingSeq_loc</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga9c5c359d6123ef2b8c89e4be8dbdc230"><td class="mdescLeft"> </td><td class="mdescRight">Get the nearest seq-loc containing the current range. <a href="group__OBJECTS__Seqloc.html#ga9c5c359d6123ef2b8c89e4be8dbdc230">More...</a><br /></td></tr>
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<tr class="separator:ga9c5c359d6123ef2b8c89e4be8dbdc230"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5d2963d52ffb0a21db19d79cc42888d9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc.html">CSeq_loc</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga5d2963d52ffb0a21db19d79cc42888d9">GetSeq_loc</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga5d2963d52ffb0a21db19d79cc42888d9"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga6fb39ebde2746dc897d848392544ee32"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCInt__fuzz.html">CInt_fuzz</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga6fb39ebde2746dc897d848392544ee32">GetFuzzFrom</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga6fb39ebde2746dc897d848392544ee32"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga782fb5ede81505062c160a951f027d61"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCInt__fuzz.html">CInt_fuzz</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga782fb5ede81505062c160a951f027d61">GetFuzzTo</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga782fb5ede81505062c160a951f027d61"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga6a230525e1ab5d865f43c95176182675"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga6a230525e1ab5d865f43c95176182675">IsWhole</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga6a230525e1ab5d865f43c95176182675"><td class="mdescLeft"> </td><td class="mdescRight">True if the current location is a whole sequence. <a href="group__OBJECTS__Seqloc.html#ga6a230525e1ab5d865f43c95176182675">More...</a><br /></td></tr>
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<tr class="separator:ga6a230525e1ab5d865f43c95176182675"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga9dec827da405f0f472b83dc72fc631e9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga9dec827da405f0f472b83dc72fc631e9">IsEmpty</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga9dec827da405f0f472b83dc72fc631e9"><td class="mdescLeft"> </td><td class="mdescRight">True if the current location is empty. <a href="group__OBJECTS__Seqloc.html#ga9dec827da405f0f472b83dc72fc631e9">More...</a><br /></td></tr>
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<tr class="separator:ga9dec827da405f0f472b83dc72fc631e9"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaea0bf21947035248dbf332ab3ee5da92"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gaea0bf21947035248dbf332ab3ee5da92">IsPoint</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaea0bf21947035248dbf332ab3ee5da92"><td class="mdescLeft"> </td><td class="mdescRight">True if the current location is a single point. <a href="group__OBJECTS__Seqloc.html#gaea0bf21947035248dbf332ab3ee5da92">More...</a><br /></td></tr>
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<tr class="separator:gaea0bf21947035248dbf332ab3ee5da92"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga080e977d9ea223a21a9f2be63c91c3de"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga080e977d9ea223a21a9f2be63c91c3de">Rewind</a> (void)</td></tr>
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<tr class="memdesc:ga080e977d9ea223a21a9f2be63c91c3de"><td class="mdescLeft"> </td><td class="mdescRight">Reset the iterator to the initial state. <a href="group__OBJECTS__Seqloc.html#ga080e977d9ea223a21a9f2be63c91c3de">More...</a><br /></td></tr>
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<tr class="separator:ga080e977d9ea223a21a9f2be63c91c3de"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaae46b142b51771fed9cf8a8bce65da0d"><td class="memItemLeft" align="right" valign="top">size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gaae46b142b51771fed9cf8a8bce65da0d">GetSize</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaae46b142b51771fed9cf8a8bce65da0d"><td class="mdescLeft"> </td><td class="mdescRight">Get number of ranges. <a href="group__OBJECTS__Seqloc.html#gaae46b142b51771fed9cf8a8bce65da0d">More...</a><br /></td></tr>
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<tr class="separator:gaae46b142b51771fed9cf8a8bce65da0d"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga38411256a640043791a35402a8a59b22"><td class="memItemLeft" align="right" valign="top">size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga38411256a640043791a35402a8a59b22">GetPos</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga38411256a640043791a35402a8a59b22"><td class="mdescLeft"> </td><td class="mdescRight">Get iterator's position. <a href="group__OBJECTS__Seqloc.html#ga38411256a640043791a35402a8a59b22">More...</a><br /></td></tr>
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<tr class="separator:ga38411256a640043791a35402a8a59b22"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaa0f181a395a64af178d8ad0e1ffa35b7"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gaa0f181a395a64af178d8ad0e1ffa35b7">SetPos</a> (size_t pos)</td></tr>
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<tr class="memdesc:gaa0f181a395a64af178d8ad0e1ffa35b7"><td class="mdescLeft"> </td><td class="mdescRight">Set iterator's position. <a href="group__OBJECTS__Seqloc.html#gaa0f181a395a64af178d8ad0e1ffa35b7">More...</a><br /></td></tr>
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<tr class="separator:gaa0f181a395a64af178d8ad0e1ffa35b7"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga8040d76337678bca32870b3468db30e9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCSeq__loc__CI.html">CSeq_loc_CI</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga8040d76337678bca32870b3468db30e9">operator*</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga8040d76337678bca32870b3468db30e9"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
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Protected Member Functions</h2></td></tr>
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<tr class="memitem:gac4a03d077f555f61567c4990dc5478a4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeq__loc__CI__RangeInfo.html">SSeq_loc_CI_RangeInfo</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gac4a03d077f555f61567c4990dc5478a4">x_GetRangeInfo</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:gac4a03d077f555f61567c4990dc5478a4"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga0e4ab11d1d227e8c6d017aa898e9f9d8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga0e4ab11d1d227e8c6d017aa898e9f9d8">x_IsValid</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:gabfd8a115f3687bc95a1ad1a3b36d1ebe"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gabfd8a115f3687bc95a1ad1a3b36d1ebe">x_GetIteratorType</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memitem:ga415340d07d5c2d3f32931f554ca1ccd1"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga415340d07d5c2d3f32931f554ca1ccd1">x_CheckValid</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *where) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:ga415340d07d5c2d3f32931f554ca1ccd1"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gabd31d8db30297ba2b480f5a48b77eea1"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gabd31d8db30297ba2b480f5a48b77eea1">x_ThrowNotValid</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *where) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="separator:gabd31d8db30297ba2b480f5a48b77eea1"><td class="memSeparator" colspan="2"> </td></tr>
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</table><table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-attribs"></a>
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Protected Attributes</h2></td></tr>
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<tr class="memitem:gaa145981ea4ec99539f5028cf4bbedcb9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCSeq__loc__CI__Impl.html">CSeq_loc_CI_Impl</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#gaa145981ea4ec99539f5028cf4bbedcb9">m_Impl</a></td></tr>
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<tr class="separator:gaa145981ea4ec99539f5028cf4bbedcb9"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga6a0965680a5c64bd1c502c3a10277f64"><td class="memItemLeft" align="right" valign="top">size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="group__OBJECTS__Seqloc.html#ga6a0965680a5c64bd1c502c3a10277f64">m_Index</a></td></tr>
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</table>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
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<div class="textblock"><p>Seq-loc iterator class – iterates all intervals from a seq-loc in the correct order. </p>
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<p class="definition">Definition at line <a class="el" href="Seq__loc_8hpp_source.html#l00452">452</a> of file <a class="el" href="Seq__loc_8hpp_source.html">Seq_loc.hpp</a>.</p>
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</div><hr/>The documentation for this class was generated from the following files:<ul>
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<li>include/objects/seqloc/<a class="el" href="Seq__loc_8hpp_source.html">Seq_loc.hpp</a></li>
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<li>src/objects/seqloc/<a class="el" href="Seq__loc_8cpp_source.html">Seq_loc.cpp</a></li>
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</ul>
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<address style="align: right;"><small>Modified on Fri Sep 20 14:57:58 2024 by modify_doxy.py rev. 669887</small></address>
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