612 lines
139 KiB
HTML
612 lines
139 KiB
HTML
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
||
<html xmlns="http://www.w3.org/1999/xhtml">
|
||
<head>
|
||
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
|
||
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
|
||
<meta name="generator" content="Doxygen 1.9.0"/>
|
||
<meta name="viewport" content="width=device-width, initial-scale=1"/>
|
||
<title>NCBI C++ ToolKit: CBlastNucleotideOptionsHandle Class Reference</title>
|
||
<link href="tabs.css" rel="stylesheet" type="text/css"/>
|
||
<script type="text/javascript" src="jquery.js"></script>
|
||
<script type="text/javascript" src="dynsections.js"></script>
|
||
<link href="doxygen.css" rel="stylesheet" type="text/css" />
|
||
<script type="text/javascript">
|
||
jQuery.getScript("/core/alerts/alerts.js", function () {
|
||
galert(['div.nav_and_browser', 'div.header', '#universal_header',
|
||
'body > *:nth-child(1)'])
|
||
});
|
||
</script>
|
||
</head>
|
||
<body>
|
||
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
|
||
<div id="titlearea">
|
||
<table cellspacing="0" cellpadding="0">
|
||
<tbody>
|
||
<tr style="height: 56px;">
|
||
<td id="projectalign" style="padding-left: 0.5em;">
|
||
<div id="projectname">NCBI C++ ToolKit
|
||
</div>
|
||
</td>
|
||
</tr>
|
||
</tbody>
|
||
</table>
|
||
</div>
|
||
<!-- end header part -->
|
||
<!-- Generated by Doxygen 1.9.0 -->
|
||
<script type="text/javascript" src="menudata.js"></script>
|
||
<script type="text/javascript" src="menu.js"></script>
|
||
<script type="text/javascript">
|
||
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */
|
||
$(function() {
|
||
initMenu('',true,true,'/toolkit/','Search');
|
||
});
|
||
/* @license-end */</script>
|
||
<div id="main-nav"></div>
|
||
</div><!-- top -->
|
||
<div class="header">
|
||
<div class="summary">
|
||
<a href="#pub-methods">Public Member Functions</a> |
|
||
<a href="#pro-methods">Protected Member Functions</a> |
|
||
<a href="#pri-methods">Private Member Functions</a> |
|
||
<a href="classCBlastNucleotideOptionsHandle-members.html">List of all members</a> </div>
|
||
<div class="headertitle">
|
||
<div class="title">CBlastNucleotideOptionsHandle Class Reference<div class="ingroups"><a class="el" href="group__ALGO.html">ALGORITHMS</a> » <a class="el" href="group__AlgoBlast.html">BLAST (Basic Local Alignment Search Tool)</a></div></div> </div>
|
||
</div><!--header-->
|
||
<div class="contents">
|
||
<p>
|
||
<a class="el" href = "https://www.ncbi.nlm.nih.gov/toolkitbookgh/?term=CBlastNucleotideOptionsHandle">Search Toolkit Book for <i>CBlastNucleotideOptionsHandle</i></a>
|
||
</p>
|
||
|
||
<p>Handle to the nucleotide-nucleotide options to the BLAST algorithm.
|
||
<a href="classCBlastNucleotideOptionsHandle.html#details">More...</a></p>
|
||
|
||
<p><code>#include <<a class="el" href="blast__nucl__options_8hpp_source.html">algo/blast/api/blast_nucl_options.hpp</a>></code></p>
|
||
<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
|
||
<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for CBlastNucleotideOptionsHandle:</div>
|
||
<div id="dynsection-0-summary" class="dynsummary" style="display:block;">
|
||
</div>
|
||
<div id="dynsection-0-content" class="dyncontent" style="display:none;">
|
||
<div class="center"><img src="img__inherit__graph/classCBlastNucleotideOptionsHandle__inherit__graph.png" border="0" usemap="#aCBlastNucleotideOptionsHandle_inherit__map" alt="Inheritance graph"/></div>
|
||
<map name="aCBlastNucleotideOptionsHandle_inherit__map" id="aCBlastNucleotideOptionsHandle_inherit__map">
|
||
<area shape="rect" title="Handle to the nucleotide-nucleotide options to the BLAST algorithm." alt="" coords="117,229,327,256"/>
|
||
<area shape="rect" href="classCDiscNucleotideOptionsHandle.html" title="Handle to the nucleotide-nucleotide options to the discontiguous BLAST algorithm." alt="" coords="5,304,212,331"/>
|
||
<area shape="rect" href="classCPHIBlastNuclOptionsHandle.html" title="Handle to the nuclein PHI BLAST options." alt="" coords="236,304,435,331"/>
|
||
<area shape="rect" href="classCBlastOptionsHandle.html" title="Handle to the options to the BLAST algorithm." alt="" coords="148,155,296,181"/>
|
||
<area shape="rect" href="classCObject.html" title="CObject –." alt="" coords="187,80,257,107"/>
|
||
<area shape="rect" href="classCDebugDumpable.html" title=" " alt="" coords="157,5,287,32"/>
|
||
</map>
|
||
<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
|
||
<div id="dynsection-1" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
|
||
<img id="dynsection-1-trigger" src="closed.png" alt="+"/> Collaboration diagram for CBlastNucleotideOptionsHandle:</div>
|
||
<div id="dynsection-1-summary" class="dynsummary" style="display:block;">
|
||
</div>
|
||
<div id="dynsection-1-content" class="dyncontent" style="display:none;">
|
||
<div class="center"><img src="img__coll__graph/classCBlastNucleotideOptionsHandle__coll__graph.png" border="0" usemap="#aCBlastNucleotideOptionsHandle_coll__map" alt="Collaboration graph"/></div>
|
||
<map name="aCBlastNucleotideOptionsHandle_coll__map" id="aCBlastNucleotideOptionsHandle_coll__map">
|
||
<area shape="rect" title="Handle to the nucleotide-nucleotide options to the BLAST algorithm." alt="" coords="34,544,245,571"/>
|
||
<area shape="rect" href="classCBlastOptionsHandle.html" title="Handle to the options to the BLAST algorithm." alt="" coords="65,468,213,495"/>
|
||
<area shape="rect" href="classCObject.html" title="CObject –." alt="" coords="35,379,105,405"/>
|
||
<area shape="rect" href="classCDebugDumpable.html" title=" " alt="" coords="5,289,135,316"/>
|
||
<area shape="rect" href="classCRef.html" title=" " alt="" coords="130,379,293,405"/>
|
||
<area shape="rect" href="classpair__base__member.html" title=" " alt="" coords="129,185,307,227"/>
|
||
<area shape="rect" href="classCRef.html" title="CRef –." alt="" coords="272,289,407,316"/>
|
||
<area shape="rect" title=" " alt="" coords="152,89,241,115"/>
|
||
<area shape="rect" href="classpair__base__member.html" title="Template used for empty base class optimization." alt="" coords="266,81,445,123"/>
|
||
<area shape="rect" title=" " alt="" coords="329,5,381,32"/>
|
||
</map>
|
||
<center><span class="legend">[<a href="graph_legend.html">legend</a>]</span></center></div>
|
||
<table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
|
||
Public Member Functions</h2></td></tr>
|
||
<tr class="memitem:ga829de23fb0f7ef49551dff11f287017b"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga829de23fb0f7ef49551dff11f287017b">CBlastNucleotideOptionsHandle</a> (<a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8ab">EAPILocality</a> locality=<a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8aba1fe87d323d4d1756e83255e6ba75c098">CBlastOptions::eLocal</a>)</td></tr>
|
||
<tr class="memdesc:ga829de23fb0f7ef49551dff11f287017b"><td class="mdescLeft"> </td><td class="mdescRight">Creates object with default options set. <a href="group__AlgoBlast.html#ga829de23fb0f7ef49551dff11f287017b">More...</a><br /></td></tr>
|
||
<tr class="separator:ga829de23fb0f7ef49551dff11f287017b"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2dc052535cfd961edb94c74dc6f59c16"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2dc052535cfd961edb94c74dc6f59c16">CBlastNucleotideOptionsHandle</a> (<a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastOptions.html">CBlastOptions</a> > opt)</td></tr>
|
||
<tr class="memdesc:ga2dc052535cfd961edb94c74dc6f59c16"><td class="mdescLeft"> </td><td class="mdescRight">Create Options Handle from Existing <a class="el" href="classCBlastOptions.html" title="Encapsulates ALL the BLAST algorithm's options.">CBlastOptions</a> Object. <a href="group__AlgoBlast.html#ga2dc052535cfd961edb94c74dc6f59c16">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2dc052535cfd961edb94c74dc6f59c16"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga658ee67d78fa56cdcb61c6bc81dc9a58"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga658ee67d78fa56cdcb61c6bc81dc9a58">SetDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga658ee67d78fa56cdcb61c6bc81dc9a58"><td class="mdescLeft"> </td><td class="mdescRight">Sets Defaults. <a href="group__AlgoBlast.html#ga658ee67d78fa56cdcb61c6bc81dc9a58">More...</a><br /></td></tr>
|
||
<tr class="separator:ga658ee67d78fa56cdcb61c6bc81dc9a58"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gabfef148f31741a64d6d4e3f442f0d94a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__options_8h.html#aefc60e8ecc9d20fd4134c93270eaba10">ELookupTableType</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gabfef148f31741a64d6d4e3f442f0d94a">GetLookupTableType</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gabfef148f31741a64d6d4e3f442f0d94a"><td class="mdescLeft"> </td><td class="mdescRight">Returns LookupTableType. <a href="group__AlgoBlast.html#gabfef148f31741a64d6d4e3f442f0d94a">More...</a><br /></td></tr>
|
||
<tr class="separator:gabfef148f31741a64d6d4e3f442f0d94a"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0c2a4cae413044860a9416c93d4a0aeb"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0c2a4cae413044860a9416c93d4a0aeb">SetLookupTableType</a> (<a class="el" href="blast__options_8h.html#aefc60e8ecc9d20fd4134c93270eaba10">ELookupTableType</a> <a class="el" href="structtype.html">type</a>)</td></tr>
|
||
<tr class="memdesc:ga0c2a4cae413044860a9416c93d4a0aeb"><td class="mdescLeft"> </td><td class="mdescRight">Sets LookupTableType. <a href="group__AlgoBlast.html#ga0c2a4cae413044860a9416c93d4a0aeb">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0c2a4cae413044860a9416c93d4a0aeb"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2b2c8480dc71a8f3b9785bb1b1464015"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2b2c8480dc71a8f3b9785bb1b1464015">GetWordSize</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga2b2c8480dc71a8f3b9785bb1b1464015"><td class="mdescLeft"> </td><td class="mdescRight">Returns WordSize. <a href="group__AlgoBlast.html#ga2b2c8480dc71a8f3b9785bb1b1464015">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2b2c8480dc71a8f3b9785bb1b1464015"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gac036b9c43ee8cd853fca5c2a5131b4c9"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gac036b9c43ee8cd853fca5c2a5131b4c9">SetWordSize</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> ws)</td></tr>
|
||
<tr class="memdesc:gac036b9c43ee8cd853fca5c2a5131b4c9"><td class="mdescLeft"> </td><td class="mdescRight">Sets WordSize. <a href="group__AlgoBlast.html#gac036b9c43ee8cd853fca5c2a5131b4c9">More...</a><br /></td></tr>
|
||
<tr class="separator:gac036b9c43ee8cd853fca5c2a5131b4c9"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab17d986499e6783f2aedbd7b8711dd57"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__dataspec__NCBI__Seqloc.html#ga2d4d48fde1d3f62563eac193a3b5afae">objects::ENa_strand</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab17d986499e6783f2aedbd7b8711dd57">GetStrandOption</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gab17d986499e6783f2aedbd7b8711dd57"><td class="mdescLeft"> </td><td class="mdescRight">Returns StrandOption. <a href="group__AlgoBlast.html#gab17d986499e6783f2aedbd7b8711dd57">More...</a><br /></td></tr>
|
||
<tr class="separator:gab17d986499e6783f2aedbd7b8711dd57"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaf8b6653245a785b49df50c5dae5100a2"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf8b6653245a785b49df50c5dae5100a2">SetStrandOption</a> (<a class="el" href="group__dataspec__NCBI__Seqloc.html#ga2d4d48fde1d3f62563eac193a3b5afae">objects::ENa_strand</a> strand)</td></tr>
|
||
<tr class="memdesc:gaf8b6653245a785b49df50c5dae5100a2"><td class="mdescLeft"> </td><td class="mdescRight">Sets StrandOption. <a href="group__AlgoBlast.html#gaf8b6653245a785b49df50c5dae5100a2">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf8b6653245a785b49df50c5dae5100a2"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga25262be3c9ccc05ec3902ccbb70da02b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga25262be3c9ccc05ec3902ccbb70da02b">GetDustFiltering</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga25262be3c9ccc05ec3902ccbb70da02b"><td class="mdescLeft"> </td><td class="mdescRight">Is dust filtering enabled? <a href="group__AlgoBlast.html#ga25262be3c9ccc05ec3902ccbb70da02b">More...</a><br /></td></tr>
|
||
<tr class="separator:ga25262be3c9ccc05ec3902ccbb70da02b"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad12693d0f2062e787bd5e7041fd89434"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad12693d0f2062e787bd5e7041fd89434">SetDustFiltering</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>)</td></tr>
|
||
<tr class="memdesc:gad12693d0f2062e787bd5e7041fd89434"><td class="mdescLeft"> </td><td class="mdescRight">Enable dust filtering. <a href="group__AlgoBlast.html#gad12693d0f2062e787bd5e7041fd89434">More...</a><br /></td></tr>
|
||
<tr class="separator:gad12693d0f2062e787bd5e7041fd89434"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5e5212e77fac021f207b933c1e15fe78"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5e5212e77fac021f207b933c1e15fe78">GetDustFilteringLevel</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5e5212e77fac021f207b933c1e15fe78"><td class="mdescLeft"> </td><td class="mdescRight">Get level parameter for dust. <a href="group__AlgoBlast.html#ga5e5212e77fac021f207b933c1e15fe78">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5e5212e77fac021f207b933c1e15fe78"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae6824892f87861bd74cd7b554c2e565f"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae6824892f87861bd74cd7b554c2e565f">SetDustFilteringLevel</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> level)</td></tr>
|
||
<tr class="memdesc:gae6824892f87861bd74cd7b554c2e565f"><td class="mdescLeft"> </td><td class="mdescRight">Set level parameter for dust. <a href="group__AlgoBlast.html#gae6824892f87861bd74cd7b554c2e565f">More...</a><br /></td></tr>
|
||
<tr class="separator:gae6824892f87861bd74cd7b554c2e565f"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaa7184030c59d3a9c608bacdfeca04642"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa7184030c59d3a9c608bacdfeca04642">GetDustFilteringWindow</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gaa7184030c59d3a9c608bacdfeca04642"><td class="mdescLeft"> </td><td class="mdescRight">Get window parameter for dust. <a href="group__AlgoBlast.html#gaa7184030c59d3a9c608bacdfeca04642">More...</a><br /></td></tr>
|
||
<tr class="separator:gaa7184030c59d3a9c608bacdfeca04642"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga16fbafb384ca802cb001a82645f3ad26"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga16fbafb384ca802cb001a82645f3ad26">SetDustFilteringWindow</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> window)</td></tr>
|
||
<tr class="memdesc:ga16fbafb384ca802cb001a82645f3ad26"><td class="mdescLeft"> </td><td class="mdescRight">Set window parameter for dust. <a href="group__AlgoBlast.html#ga16fbafb384ca802cb001a82645f3ad26">More...</a><br /></td></tr>
|
||
<tr class="separator:ga16fbafb384ca802cb001a82645f3ad26"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga04d00d81c063237b2f99b84e440d65c5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga04d00d81c063237b2f99b84e440d65c5">GetDustFilteringLinker</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga04d00d81c063237b2f99b84e440d65c5"><td class="mdescLeft"> </td><td class="mdescRight">Get linker parameter for dust. <a href="group__AlgoBlast.html#ga04d00d81c063237b2f99b84e440d65c5">More...</a><br /></td></tr>
|
||
<tr class="separator:ga04d00d81c063237b2f99b84e440d65c5"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga459b78555b88168756e7b45abc12a204"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga459b78555b88168756e7b45abc12a204">SetDustFilteringLinker</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> linker)</td></tr>
|
||
<tr class="memdesc:ga459b78555b88168756e7b45abc12a204"><td class="mdescLeft"> </td><td class="mdescRight">Set linker parameter for dust. <a href="group__AlgoBlast.html#ga459b78555b88168756e7b45abc12a204">More...</a><br /></td></tr>
|
||
<tr class="separator:ga459b78555b88168756e7b45abc12a204"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga974d36b0e15a0e60f39f2d0d77f24416"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga974d36b0e15a0e60f39f2d0d77f24416">GetRepeatFiltering</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga974d36b0e15a0e60f39f2d0d77f24416"><td class="mdescLeft"> </td><td class="mdescRight">Is repeat filtering enabled? <a href="group__AlgoBlast.html#ga974d36b0e15a0e60f39f2d0d77f24416">More...</a><br /></td></tr>
|
||
<tr class="separator:ga974d36b0e15a0e60f39f2d0d77f24416"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga969458103ad5a168c2fd4a446b9de1ec"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga969458103ad5a168c2fd4a446b9de1ec">SetRepeatFiltering</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> <a class="el" href="table2asn__context_8hpp.html#a4a166b59119c660536919d528607e787a3a6d0284e743dc4a9b86f97d6dd1a3bf">val</a>)</td></tr>
|
||
<tr class="memdesc:ga969458103ad5a168c2fd4a446b9de1ec"><td class="mdescLeft"> </td><td class="mdescRight">Enable repeat filtering. <a href="group__AlgoBlast.html#ga969458103ad5a168c2fd4a446b9de1ec">More...</a><br /></td></tr>
|
||
<tr class="separator:ga969458103ad5a168c2fd4a446b9de1ec"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gabf8d8404733046dc799fcc01fef2551f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gabf8d8404733046dc799fcc01fef2551f">GetRepeatFilteringDB</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gabf8d8404733046dc799fcc01fef2551f"><td class="mdescLeft"> </td><td class="mdescRight">Get the repeat filtering database. <a href="group__AlgoBlast.html#gabf8d8404733046dc799fcc01fef2551f">More...</a><br /></td></tr>
|
||
<tr class="separator:gabf8d8404733046dc799fcc01fef2551f"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga79b62e7ee5dba1efec2733bf6299ded7"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga79b62e7ee5dba1efec2733bf6299ded7">SetRepeatFilteringDB</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *db)</td></tr>
|
||
<tr class="memdesc:ga79b62e7ee5dba1efec2733bf6299ded7"><td class="mdescLeft"> </td><td class="mdescRight">Enable repeat filtering. <a href="group__AlgoBlast.html#ga79b62e7ee5dba1efec2733bf6299ded7">More...</a><br /></td></tr>
|
||
<tr class="separator:ga79b62e7ee5dba1efec2733bf6299ded7"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab1fc9db80b43bad9a2f101dae08d9caf"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab1fc9db80b43bad9a2f101dae08d9caf">GetWindowMaskerTaxId</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gab1fc9db80b43bad9a2f101dae08d9caf"><td class="mdescLeft"> </td><td class="mdescRight">Get the window masker taxid (or 0 if not set). <a href="group__AlgoBlast.html#gab1fc9db80b43bad9a2f101dae08d9caf">More...</a><br /></td></tr>
|
||
<tr class="separator:gab1fc9db80b43bad9a2f101dae08d9caf"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga44962f1655bd8721a3d9743f30a64968"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga44962f1655bd8721a3d9743f30a64968">SetWindowMaskerTaxId</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> taxid)</td></tr>
|
||
<tr class="memdesc:ga44962f1655bd8721a3d9743f30a64968"><td class="mdescLeft"> </td><td class="mdescRight">Enable window masker and select a taxid (or 0 to disable). <a href="group__AlgoBlast.html#ga44962f1655bd8721a3d9743f30a64968">More...</a><br /></td></tr>
|
||
<tr class="separator:ga44962f1655bd8721a3d9743f30a64968"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga6304b7d6c8014ce87b5902c42999473e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6304b7d6c8014ce87b5902c42999473e">GetWindowMaskerDatabase</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga6304b7d6c8014ce87b5902c42999473e"><td class="mdescLeft"> </td><td class="mdescRight">Get the window masker database name (or NULL if not set). <a href="group__AlgoBlast.html#ga6304b7d6c8014ce87b5902c42999473e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6304b7d6c8014ce87b5902c42999473e"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad52d3c034e7214318c936603ed338f6f"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad52d3c034e7214318c936603ed338f6f">SetWindowMaskerDatabase</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *db)</td></tr>
|
||
<tr class="memdesc:gad52d3c034e7214318c936603ed338f6f"><td class="mdescLeft"> </td><td class="mdescRight">Enable window masker and select a database (or NULL to disable). <a href="group__AlgoBlast.html#gad52d3c034e7214318c936603ed338f6f">More...</a><br /></td></tr>
|
||
<tr class="separator:gad52d3c034e7214318c936603ed338f6f"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga58c38abc136dd1edc8c7c4017ad1b042"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga58c38abc136dd1edc8c7c4017ad1b042">GetXDropoff</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga58c38abc136dd1edc8c7c4017ad1b042"><td class="mdescLeft"> </td><td class="mdescRight">Returns XDropoff. <a href="group__AlgoBlast.html#ga58c38abc136dd1edc8c7c4017ad1b042">More...</a><br /></td></tr>
|
||
<tr class="separator:ga58c38abc136dd1edc8c7c4017ad1b042"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga8f891d43448337c0e6ad7c7d5f2b745b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8f891d43448337c0e6ad7c7d5f2b745b">SetXDropoff</a> (double x)</td></tr>
|
||
<tr class="memdesc:ga8f891d43448337c0e6ad7c7d5f2b745b"><td class="mdescLeft"> </td><td class="mdescRight">Sets XDropoff. <a href="group__AlgoBlast.html#ga8f891d43448337c0e6ad7c7d5f2b745b">More...</a><br /></td></tr>
|
||
<tr class="separator:ga8f891d43448337c0e6ad7c7d5f2b745b"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga13e763fb6aca9aaf2e408df3494f974b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__options_8h.html#a27ac4a8b1adf9fcebfd3c1c17003be7e">EBlastPrelimGapExt</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga13e763fb6aca9aaf2e408df3494f974b">GetGapExtnAlgorithm</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga13e763fb6aca9aaf2e408df3494f974b"><td class="mdescLeft"> </td><td class="mdescRight">Returns GapExtnAlgorithm. <a href="group__AlgoBlast.html#ga13e763fb6aca9aaf2e408df3494f974b">More...</a><br /></td></tr>
|
||
<tr class="separator:ga13e763fb6aca9aaf2e408df3494f974b"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga4332b368522561287e82a5487930d235"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga4332b368522561287e82a5487930d235">SetGapExtnAlgorithm</a> (<a class="el" href="blast__options_8h.html#a27ac4a8b1adf9fcebfd3c1c17003be7e">EBlastPrelimGapExt</a> <a class="el" href="ncbi__server__info_8c.html#ae90ca1c8879ce47bca398195df234e1d">algo</a>)</td></tr>
|
||
<tr class="memdesc:ga4332b368522561287e82a5487930d235"><td class="mdescLeft"> </td><td class="mdescRight">Sets GapExtnAlgorithm. <a href="group__AlgoBlast.html#ga4332b368522561287e82a5487930d235">More...</a><br /></td></tr>
|
||
<tr class="separator:ga4332b368522561287e82a5487930d235"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga22ac5a8c9904c7396cbd26d426ea3aee"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__options_8h.html#ab1a1b3bc1009296f1aa84a645cb0cede">EBlastTbackExt</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga22ac5a8c9904c7396cbd26d426ea3aee">GetGapTracebackAlgorithm</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga22ac5a8c9904c7396cbd26d426ea3aee"><td class="mdescLeft"> </td><td class="mdescRight">Returns GapTracebackAlgorithm. <a href="group__AlgoBlast.html#ga22ac5a8c9904c7396cbd26d426ea3aee">More...</a><br /></td></tr>
|
||
<tr class="separator:ga22ac5a8c9904c7396cbd26d426ea3aee"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga6256aacd96fefc85e4adf96cb2a63391"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6256aacd96fefc85e4adf96cb2a63391">SetGapTracebackAlgorithm</a> (<a class="el" href="blast__options_8h.html#ab1a1b3bc1009296f1aa84a645cb0cede">EBlastTbackExt</a> <a class="el" href="ncbi__server__info_8c.html#ae90ca1c8879ce47bca398195df234e1d">algo</a>)</td></tr>
|
||
<tr class="memdesc:ga6256aacd96fefc85e4adf96cb2a63391"><td class="mdescLeft"> </td><td class="mdescRight">Sets GapTracebackAlgorithm. <a href="group__AlgoBlast.html#ga6256aacd96fefc85e4adf96cb2a63391">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6256aacd96fefc85e4adf96cb2a63391"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga4032168b480bf0c969146695747dc3ef"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga4032168b480bf0c969146695747dc3ef">GetMatchReward</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga4032168b480bf0c969146695747dc3ef"><td class="mdescLeft"> </td><td class="mdescRight">Returns MatchReward. <a href="group__AlgoBlast.html#ga4032168b480bf0c969146695747dc3ef">More...</a><br /></td></tr>
|
||
<tr class="separator:ga4032168b480bf0c969146695747dc3ef"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2e21c9e6f6be833a1257f49a3d659357"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2e21c9e6f6be833a1257f49a3d659357">SetMatchReward</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="njn__localmaxstatutil_8hpp.html#a528746e9ddcc245107c2546995139b42">r</a>)</td></tr>
|
||
<tr class="memdesc:ga2e21c9e6f6be833a1257f49a3d659357"><td class="mdescLeft"> </td><td class="mdescRight">Sets MatchReward. <a href="group__AlgoBlast.html#ga2e21c9e6f6be833a1257f49a3d659357">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2e21c9e6f6be833a1257f49a3d659357"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad27e9c1596efb26ba7ac2b28fff05176"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad27e9c1596efb26ba7ac2b28fff05176">GetMismatchPenalty</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gad27e9c1596efb26ba7ac2b28fff05176"><td class="mdescLeft"> </td><td class="mdescRight">Returns MismatchPenalty. <a href="group__AlgoBlast.html#gad27e9c1596efb26ba7ac2b28fff05176">More...</a><br /></td></tr>
|
||
<tr class="separator:gad27e9c1596efb26ba7ac2b28fff05176"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga6b9e141f78b976f23bf38b5d34a66201"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6b9e141f78b976f23bf38b5d34a66201">SetMismatchPenalty</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> p)</td></tr>
|
||
<tr class="memdesc:ga6b9e141f78b976f23bf38b5d34a66201"><td class="mdescLeft"> </td><td class="mdescRight">Sets MismatchPenalty. <a href="group__AlgoBlast.html#ga6b9e141f78b976f23bf38b5d34a66201">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6b9e141f78b976f23bf38b5d34a66201"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga54c0678559d32fa3aeeec5e6aa35ee1e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga54c0678559d32fa3aeeec5e6aa35ee1e">GetMatrixName</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga54c0678559d32fa3aeeec5e6aa35ee1e"><td class="mdescLeft"> </td><td class="mdescRight">Returns MatrixName. <a href="group__AlgoBlast.html#ga54c0678559d32fa3aeeec5e6aa35ee1e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga54c0678559d32fa3aeeec5e6aa35ee1e"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga78538bba67c2c43eba71128c4b6e01cf"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga78538bba67c2c43eba71128c4b6e01cf">SetMatrixName</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *matrix)</td></tr>
|
||
<tr class="memdesc:ga78538bba67c2c43eba71128c4b6e01cf"><td class="mdescLeft"> </td><td class="mdescRight">Sets MatrixName. <a href="group__AlgoBlast.html#ga78538bba67c2c43eba71128c4b6e01cf">More...</a><br /></td></tr>
|
||
<tr class="separator:ga78538bba67c2c43eba71128c4b6e01cf"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab0854f9a0e62088d6562b9625016ca0b"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab0854f9a0e62088d6562b9625016ca0b">GetGapOpeningCost</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gab0854f9a0e62088d6562b9625016ca0b"><td class="mdescLeft"> </td><td class="mdescRight">Returns GapOpeningCost. <a href="group__AlgoBlast.html#gab0854f9a0e62088d6562b9625016ca0b">More...</a><br /></td></tr>
|
||
<tr class="separator:gab0854f9a0e62088d6562b9625016ca0b"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae82b40cb3ca08f932716d268985f8c55"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae82b40cb3ca08f932716d268985f8c55">SetGapOpeningCost</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="thrddgri_8c.html#ac0814c7f6d26f2f867552032d5314c9c">g</a>)</td></tr>
|
||
<tr class="memdesc:gae82b40cb3ca08f932716d268985f8c55"><td class="mdescLeft"> </td><td class="mdescRight">Sets GapOpeningCost. <a href="group__AlgoBlast.html#gae82b40cb3ca08f932716d268985f8c55">More...</a><br /></td></tr>
|
||
<tr class="separator:gae82b40cb3ca08f932716d268985f8c55"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga13265efdc2fdee1c4c6f6941369e9899"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga13265efdc2fdee1c4c6f6941369e9899">GetGapExtensionCost</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga13265efdc2fdee1c4c6f6941369e9899"><td class="mdescLeft"> </td><td class="mdescRight">Returns GapExtensionCost. <a href="group__AlgoBlast.html#ga13265efdc2fdee1c4c6f6941369e9899">More...</a><br /></td></tr>
|
||
<tr class="separator:ga13265efdc2fdee1c4c6f6941369e9899"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaadd8ddda0377192cdc30fca89b771e3b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaadd8ddda0377192cdc30fca89b771e3b">SetGapExtensionCost</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> e)</td></tr>
|
||
<tr class="memdesc:gaadd8ddda0377192cdc30fca89b771e3b"><td class="mdescLeft"> </td><td class="mdescRight">Sets GapExtensionCost. <a href="group__AlgoBlast.html#gaadd8ddda0377192cdc30fca89b771e3b">More...</a><br /></td></tr>
|
||
<tr class="separator:gaadd8ddda0377192cdc30fca89b771e3b"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga6b3c0e438d4c6cbc4006443b7a83873d"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6b3c0e438d4c6cbc4006443b7a83873d">SetTraditionalBlastnDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga6b3c0e438d4c6cbc4006443b7a83873d"><td class="mdescLeft"> </td><td class="mdescRight">Sets TraditionalBlastnDefaults. <a href="group__AlgoBlast.html#ga6b3c0e438d4c6cbc4006443b7a83873d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6b3c0e438d4c6cbc4006443b7a83873d"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga945791bc5b566e8af49eece92c460ecd"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga945791bc5b566e8af49eece92c460ecd">SetTraditionalMegablastDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga945791bc5b566e8af49eece92c460ecd"><td class="mdescLeft"> </td><td class="mdescRight">Sets TraditionalMegablastDefaults. <a href="group__AlgoBlast.html#ga945791bc5b566e8af49eece92c460ecd">More...</a><br /></td></tr>
|
||
<tr class="separator:ga945791bc5b566e8af49eece92c460ecd"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga593e5ff831a4818e3b236525a84f9013"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga593e5ff831a4818e3b236525a84f9013">SetVecScreenDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga593e5ff831a4818e3b236525a84f9013"><td class="mdescLeft"> </td><td class="mdescRight">Sets default options for VecScreen. <a href="group__AlgoBlast.html#ga593e5ff831a4818e3b236525a84f9013">More...</a><br /></td></tr>
|
||
<tr class="separator:ga593e5ff831a4818e3b236525a84f9013"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_methods_classCBlastOptionsHandle"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCBlastOptionsHandle')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a></td></tr>
|
||
<tr class="memitem:ga55f3a32a3a56731e11cf7bc366033b29 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga55f3a32a3a56731e11cf7bc366033b29">CBlastOptionsHandle</a> (<a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8ab">EAPILocality</a> locality)</td></tr>
|
||
<tr class="memdesc:ga55f3a32a3a56731e11cf7bc366033b29 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Default c-tor. <a href="group__AlgoBlast.html#ga55f3a32a3a56731e11cf7bc366033b29">More...</a><br /></td></tr>
|
||
<tr class="separator:ga55f3a32a3a56731e11cf7bc366033b29 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaa9b361bf1d476216378da8fecbab960f inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa9b361bf1d476216378da8fecbab960f">Validate</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gaa9b361bf1d476216378da8fecbab960f inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Validate the options contained in this object. <a href="group__AlgoBlast.html#gaa9b361bf1d476216378da8fecbab960f">More...</a><br /></td></tr>
|
||
<tr class="separator:gaa9b361bf1d476216378da8fecbab960f inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga8eff7539c027b3bec0f399e6406bd23c inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptions.html">CBlastOptions</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8eff7539c027b3bec0f399e6406bd23c">GetOptions</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga8eff7539c027b3bec0f399e6406bd23c inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Return the object which this object is a handle for. <a href="group__AlgoBlast.html#ga8eff7539c027b3bec0f399e6406bd23c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga8eff7539c027b3bec0f399e6406bd23c inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5b6928ce3ef8ef99b60cd372264854cc inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBlastOptions.html">CBlastOptions</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5b6928ce3ef8ef99b60cd372264854cc">SetOptions</a> ()</td></tr>
|
||
<tr class="memdesc:ga5b6928ce3ef8ef99b60cd372264854cc inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns a reference to the internal options class which this object is a handle for. <a href="group__AlgoBlast.html#ga5b6928ce3ef8ef99b60cd372264854cc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5b6928ce3ef8ef99b60cd372264854cc inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2251f8facc0127b9efb0a428e1f0a67f inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2251f8facc0127b9efb0a428e1f0a67f">DoneDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga2251f8facc0127b9efb0a428e1f0a67f inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns true if this object needs default values set. <a href="group__AlgoBlast.html#ga2251f8facc0127b9efb0a428e1f0a67f">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2251f8facc0127b9efb0a428e1f0a67f inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad278bde0ef4535931e516e84cc2e8cdc inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad278bde0ef4535931e516e84cc2e8cdc">GetWindowSize</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gad278bde0ef4535931e516e84cc2e8cdc inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns WindowSize. <a href="group__AlgoBlast.html#gad278bde0ef4535931e516e84cc2e8cdc">More...</a><br /></td></tr>
|
||
<tr class="separator:gad278bde0ef4535931e516e84cc2e8cdc inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9063e9f8369353466a0d15c906cfe9fc inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9063e9f8369353466a0d15c906cfe9fc">SetWindowSize</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> ws)</td></tr>
|
||
<tr class="memdesc:ga9063e9f8369353466a0d15c906cfe9fc inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets WindowSize. <a href="group__AlgoBlast.html#ga9063e9f8369353466a0d15c906cfe9fc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9063e9f8369353466a0d15c906cfe9fc inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga329323fd90c7bab19a7a0b831738fda1 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga329323fd90c7bab19a7a0b831738fda1">GetOffDiagonalRange</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:ga329323fd90c7bab19a7a0b831738fda1 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gacfabee4047a2da9c36a555b3e27f6d10 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gacfabee4047a2da9c36a555b3e27f6d10">SetOffDiagonalRange</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="njn__localmaxstatutil_8hpp.html#a528746e9ddcc245107c2546995139b42">r</a>)</td></tr>
|
||
<tr class="separator:gacfabee4047a2da9c36a555b3e27f6d10 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaf0c35edf4f914c8084809c038ecd8793 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf0c35edf4f914c8084809c038ecd8793">ClearFilterOptions</a> ()</td></tr>
|
||
<tr class="memdesc:gaf0c35edf4f914c8084809c038ecd8793 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Clears the filtering options. <a href="group__AlgoBlast.html#gaf0c35edf4f914c8084809c038ecd8793">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf0c35edf4f914c8084809c038ecd8793 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaecf74272b601a0f23240146a5721eec5 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">char * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaecf74272b601a0f23240146a5721eec5">GetFilterString</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gaecf74272b601a0f23240146a5721eec5 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns FilterString. <a href="group__AlgoBlast.html#gaecf74272b601a0f23240146a5721eec5">More...</a><br /></td></tr>
|
||
<tr class="separator:gaecf74272b601a0f23240146a5721eec5 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gabc5ccfce9d7a046f8c5649e0dc78c537 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gabc5ccfce9d7a046f8c5649e0dc78c537">SetFilterString</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> char *<a class="el" href="dbapi_2driver_2ftds14_2freetds_2utils_2des_8c.html#ab5682fc514f083a7cb16235b1ffd1f5f">f</a>, <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> clear=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
|
||
<tr class="memdesc:gabc5ccfce9d7a046f8c5649e0dc78c537 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets FilterString. <a href="group__AlgoBlast.html#gabc5ccfce9d7a046f8c5649e0dc78c537">More...</a><br /></td></tr>
|
||
<tr class="separator:gabc5ccfce9d7a046f8c5649e0dc78c537 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9367d34a943a87805a7f31e3a5a64cbd inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9367d34a943a87805a7f31e3a5a64cbd">GetMaskAtHash</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga9367d34a943a87805a7f31e3a5a64cbd inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns whether masking should only be done for lookup table creation. <a href="group__AlgoBlast.html#ga9367d34a943a87805a7f31e3a5a64cbd">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9367d34a943a87805a7f31e3a5a64cbd inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab7f4da26cbeb0ce62f8a23aa6ecb260f inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab7f4da26cbeb0ce62f8a23aa6ecb260f">SetMaskAtHash</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
|
||
<tr class="memdesc:gab7f4da26cbeb0ce62f8a23aa6ecb260f inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets MaskAtHash. <a href="group__AlgoBlast.html#gab7f4da26cbeb0ce62f8a23aa6ecb260f">More...</a><br /></td></tr>
|
||
<tr class="separator:gab7f4da26cbeb0ce62f8a23aa6ecb260f inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gabd21b4f2b5c337ad16b8fb374d06e592 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gabd21b4f2b5c337ad16b8fb374d06e592">GetGapXDropoff</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gabd21b4f2b5c337ad16b8fb374d06e592 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns GapXDropoff. <a href="group__AlgoBlast.html#gabd21b4f2b5c337ad16b8fb374d06e592">More...</a><br /></td></tr>
|
||
<tr class="separator:gabd21b4f2b5c337ad16b8fb374d06e592 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab6d1800db635bf322d40a7df84d81309 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab6d1800db635bf322d40a7df84d81309">SetGapXDropoff</a> (double x)</td></tr>
|
||
<tr class="memdesc:gab6d1800db635bf322d40a7df84d81309 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets GapXDropoff. <a href="group__AlgoBlast.html#gab6d1800db635bf322d40a7df84d81309">More...</a><br /></td></tr>
|
||
<tr class="separator:gab6d1800db635bf322d40a7df84d81309 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga1ecf084768343b7e22a2d5b26a4522f4 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1ecf084768343b7e22a2d5b26a4522f4">GetGapTrigger</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga1ecf084768343b7e22a2d5b26a4522f4 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns GapTrigger. <a href="group__AlgoBlast.html#ga1ecf084768343b7e22a2d5b26a4522f4">More...</a><br /></td></tr>
|
||
<tr class="separator:ga1ecf084768343b7e22a2d5b26a4522f4 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga35205aa3c9179dcb680907fcd6fa2934 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga35205aa3c9179dcb680907fcd6fa2934">SetGapTrigger</a> (double <a class="el" href="thrddgri_8c.html#ac0814c7f6d26f2f867552032d5314c9c">g</a>)</td></tr>
|
||
<tr class="memdesc:ga35205aa3c9179dcb680907fcd6fa2934 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets GapTrigger. <a href="group__AlgoBlast.html#ga35205aa3c9179dcb680907fcd6fa2934">More...</a><br /></td></tr>
|
||
<tr class="separator:ga35205aa3c9179dcb680907fcd6fa2934 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga3d4e01b80f7fd10454a97549dc98c434 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3d4e01b80f7fd10454a97549dc98c434">GetGapXDropoffFinal</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga3d4e01b80f7fd10454a97549dc98c434 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns GapXDropoffFinal. <a href="group__AlgoBlast.html#ga3d4e01b80f7fd10454a97549dc98c434">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3d4e01b80f7fd10454a97549dc98c434 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaa34c9d7ac1c95d20b4ef2453901b3cac inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa34c9d7ac1c95d20b4ef2453901b3cac">SetGapXDropoffFinal</a> (double x)</td></tr>
|
||
<tr class="memdesc:gaa34c9d7ac1c95d20b4ef2453901b3cac inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets GapXDropoffFinal. <a href="group__AlgoBlast.html#gaa34c9d7ac1c95d20b4ef2453901b3cac">More...</a><br /></td></tr>
|
||
<tr class="separator:gaa34c9d7ac1c95d20b4ef2453901b3cac inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad5508b3486fc54ee3f81983a3a4ae1c0 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad5508b3486fc54ee3f81983a3a4ae1c0">GetHitlistSize</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gad5508b3486fc54ee3f81983a3a4ae1c0 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns HitlistSize. <a href="group__AlgoBlast.html#gad5508b3486fc54ee3f81983a3a4ae1c0">More...</a><br /></td></tr>
|
||
<tr class="separator:gad5508b3486fc54ee3f81983a3a4ae1c0 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga7a4f08045d489497575c0487c52c028e inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7a4f08045d489497575c0487c52c028e">SetHitlistSize</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> s)</td></tr>
|
||
<tr class="memdesc:ga7a4f08045d489497575c0487c52c028e inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets HitlistSize. <a href="group__AlgoBlast.html#ga7a4f08045d489497575c0487c52c028e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7a4f08045d489497575c0487c52c028e inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga93116c0ac76d330ffd616afb78762fee inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga93116c0ac76d330ffd616afb78762fee">GetMaxNumHspPerSequence</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga93116c0ac76d330ffd616afb78762fee inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns MaxNumHspPerSequence. <a href="group__AlgoBlast.html#ga93116c0ac76d330ffd616afb78762fee">More...</a><br /></td></tr>
|
||
<tr class="separator:ga93116c0ac76d330ffd616afb78762fee inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad72b6c0d345f3c3030fb6ba6a6e7b0dc inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad72b6c0d345f3c3030fb6ba6a6e7b0dc">SetMaxNumHspPerSequence</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
|
||
<tr class="memdesc:gad72b6c0d345f3c3030fb6ba6a6e7b0dc inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets MaxNumHspPerSequence. <a href="group__AlgoBlast.html#gad72b6c0d345f3c3030fb6ba6a6e7b0dc">More...</a><br /></td></tr>
|
||
<tr class="separator:gad72b6c0d345f3c3030fb6ba6a6e7b0dc inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaf9e6856a0606c50ba0441ff40c0432d9 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf9e6856a0606c50ba0441ff40c0432d9">GetMaxHspsPerSubject</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gaf9e6856a0606c50ba0441ff40c0432d9 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns MaxHspsPerSubjectQueryPair. <a href="group__AlgoBlast.html#gaf9e6856a0606c50ba0441ff40c0432d9">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf9e6856a0606c50ba0441ff40c0432d9 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga74fc1e6ed617ad75931125ef0e6289ef inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga74fc1e6ed617ad75931125ef0e6289ef">SetMaxHspsPerSubject</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> m)</td></tr>
|
||
<tr class="memdesc:ga74fc1e6ed617ad75931125ef0e6289ef inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets MaxHspPerSubjectQueryPair. <a href="group__AlgoBlast.html#ga74fc1e6ed617ad75931125ef0e6289ef">More...</a><br /></td></tr>
|
||
<tr class="separator:ga74fc1e6ed617ad75931125ef0e6289ef inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gafee6f3facc5b6fd306ebbd9dfe29b357 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gafee6f3facc5b6fd306ebbd9dfe29b357">GetEvalueThreshold</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gafee6f3facc5b6fd306ebbd9dfe29b357 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns EvalueThreshold. <a href="group__AlgoBlast.html#gafee6f3facc5b6fd306ebbd9dfe29b357">More...</a><br /></td></tr>
|
||
<tr class="separator:gafee6f3facc5b6fd306ebbd9dfe29b357 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0f5b08ca4094558b90bd1fac1a0113f5 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0f5b08ca4094558b90bd1fac1a0113f5">SetEvalueThreshold</a> (double eval)</td></tr>
|
||
<tr class="memdesc:ga0f5b08ca4094558b90bd1fac1a0113f5 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets EvalueThreshold. <a href="group__AlgoBlast.html#ga0f5b08ca4094558b90bd1fac1a0113f5">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0f5b08ca4094558b90bd1fac1a0113f5 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaa595bd6c12f2f25369d2f5cb57ee3880 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa595bd6c12f2f25369d2f5cb57ee3880">GetCutoffScore</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gaa595bd6c12f2f25369d2f5cb57ee3880 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns CutoffScore. <a href="group__AlgoBlast.html#gaa595bd6c12f2f25369d2f5cb57ee3880">More...</a><br /></td></tr>
|
||
<tr class="separator:gaa595bd6c12f2f25369d2f5cb57ee3880 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae28e9bc38a9be4e821f4474550e17f43 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae28e9bc38a9be4e821f4474550e17f43">SetCutoffScore</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> s)</td></tr>
|
||
<tr class="memdesc:gae28e9bc38a9be4e821f4474550e17f43 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets CutoffScore. <a href="group__AlgoBlast.html#gae28e9bc38a9be4e821f4474550e17f43">More...</a><br /></td></tr>
|
||
<tr class="separator:gae28e9bc38a9be4e821f4474550e17f43 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga6e159f55add441259f7ae7a73769e00d inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6e159f55add441259f7ae7a73769e00d">GetPercentIdentity</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga6e159f55add441259f7ae7a73769e00d inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns PercentIdentity. <a href="group__AlgoBlast.html#ga6e159f55add441259f7ae7a73769e00d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6e159f55add441259f7ae7a73769e00d inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae01528c97963caf8dca065c9ceb4f74b inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae01528c97963caf8dca065c9ceb4f74b">SetPercentIdentity</a> (double p)</td></tr>
|
||
<tr class="memdesc:gae01528c97963caf8dca065c9ceb4f74b inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets PercentIdentity. <a href="group__AlgoBlast.html#gae01528c97963caf8dca065c9ceb4f74b">More...</a><br /></td></tr>
|
||
<tr class="separator:gae01528c97963caf8dca065c9ceb4f74b inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab002c49e1de57868aa7af1b79498800f inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab002c49e1de57868aa7af1b79498800f">GetQueryCovHspPerc</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gab002c49e1de57868aa7af1b79498800f inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns QueryCovHspPerc. <a href="group__AlgoBlast.html#gab002c49e1de57868aa7af1b79498800f">More...</a><br /></td></tr>
|
||
<tr class="separator:gab002c49e1de57868aa7af1b79498800f inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga25185d5e45e009172f203f097d83aef1 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga25185d5e45e009172f203f097d83aef1">SetQueryCovHspPerc</a> (double p)</td></tr>
|
||
<tr class="memdesc:ga25185d5e45e009172f203f097d83aef1 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets QueryCovHspPerc. <a href="group__AlgoBlast.html#ga25185d5e45e009172f203f097d83aef1">More...</a><br /></td></tr>
|
||
<tr class="separator:ga25185d5e45e009172f203f097d83aef1 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga847711132cbcdeea427728032c3ed987 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga847711132cbcdeea427728032c3ed987">GetMinDiagSeparation</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga847711132cbcdeea427728032c3ed987 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns MinDiagSeparation. <a href="group__AlgoBlast.html#ga847711132cbcdeea427728032c3ed987">More...</a><br /></td></tr>
|
||
<tr class="separator:ga847711132cbcdeea427728032c3ed987 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga957508564ab5700b0e1c9d5b98a754d5 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga957508564ab5700b0e1c9d5b98a754d5">SetMinDiagSeparation</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> d)</td></tr>
|
||
<tr class="memdesc:ga957508564ab5700b0e1c9d5b98a754d5 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets MinDiagSeparation. <a href="group__AlgoBlast.html#ga957508564ab5700b0e1c9d5b98a754d5">More...</a><br /></td></tr>
|
||
<tr class="separator:ga957508564ab5700b0e1c9d5b98a754d5 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga63aa41eb526dac3c38e7f1ce8f0262fc inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga63aa41eb526dac3c38e7f1ce8f0262fc">GetGappedMode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga63aa41eb526dac3c38e7f1ce8f0262fc inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns GappedMode. <a href="group__AlgoBlast.html#ga63aa41eb526dac3c38e7f1ce8f0262fc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga63aa41eb526dac3c38e7f1ce8f0262fc inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad9541dbc2881213874a26487f0ac94e3 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad9541dbc2881213874a26487f0ac94e3">SetGappedMode</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
|
||
<tr class="memdesc:gad9541dbc2881213874a26487f0ac94e3 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets GappedMode. <a href="group__AlgoBlast.html#gad9541dbc2881213874a26487f0ac94e3">More...</a><br /></td></tr>
|
||
<tr class="separator:gad9541dbc2881213874a26487f0ac94e3 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaff598fc5b679bc7fa9446b1fc4bdc6d0 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaff598fc5b679bc7fa9446b1fc4bdc6d0">GetCullingLimit</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gaff598fc5b679bc7fa9446b1fc4bdc6d0 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns Culling limit. <a href="group__AlgoBlast.html#gaff598fc5b679bc7fa9446b1fc4bdc6d0">More...</a><br /></td></tr>
|
||
<tr class="separator:gaff598fc5b679bc7fa9446b1fc4bdc6d0 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaaa736c7dadde191dd57ca5eafca58e1f inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaaa736c7dadde191dd57ca5eafca58e1f">SetCullingLimit</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> s)</td></tr>
|
||
<tr class="memdesc:gaaa736c7dadde191dd57ca5eafca58e1f inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets Culling limit. <a href="group__AlgoBlast.html#gaaa736c7dadde191dd57ca5eafca58e1f">More...</a><br /></td></tr>
|
||
<tr class="separator:gaaa736c7dadde191dd57ca5eafca58e1f inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga4e2633cb1fedbd8baa88bf868eb31738 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga4e2633cb1fedbd8baa88bf868eb31738">GetMaskLevel</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga4e2633cb1fedbd8baa88bf868eb31738 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns MaskLevel -RMH-. <a href="group__AlgoBlast.html#ga4e2633cb1fedbd8baa88bf868eb31738">More...</a><br /></td></tr>
|
||
<tr class="separator:ga4e2633cb1fedbd8baa88bf868eb31738 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gac437855d6cec56f44210668aba7eedb8 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gac437855d6cec56f44210668aba7eedb8">SetMaskLevel</a> (<a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> ml)</td></tr>
|
||
<tr class="memdesc:gac437855d6cec56f44210668aba7eedb8 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets MaskLevel -RMH-. <a href="group__AlgoBlast.html#gac437855d6cec56f44210668aba7eedb8">More...</a><br /></td></tr>
|
||
<tr class="separator:gac437855d6cec56f44210668aba7eedb8 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gafd62e6bf1c9aa5fc07e5d21bfccefe0e inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gafd62e6bf1c9aa5fc07e5d21bfccefe0e">GetComplexityAdjMode</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gafd62e6bf1c9aa5fc07e5d21bfccefe0e inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns Complexity Adjustment Mode -RMH-. <a href="group__AlgoBlast.html#gafd62e6bf1c9aa5fc07e5d21bfccefe0e">More...</a><br /></td></tr>
|
||
<tr class="separator:gafd62e6bf1c9aa5fc07e5d21bfccefe0e inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga3558e70c89e3290647960249944ff818 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3558e70c89e3290647960249944ff818">SetComplexityAdjMode</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> m=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a41f9c5fb8b08eb5dc3edce4dcb37fee7">true</a>)</td></tr>
|
||
<tr class="memdesc:ga3558e70c89e3290647960249944ff818 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets ComplexityAdjMode -RMH-. <a href="group__AlgoBlast.html#ga3558e70c89e3290647960249944ff818">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3558e70c89e3290647960249944ff818 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaaa090c0657270cc5853e9daedf412af1 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">double </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaaa090c0657270cc5853e9daedf412af1">GetLowScorePerc</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:gaaa090c0657270cc5853e9daedf412af1 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns low score percentage for ungapped alignments. <a href="group__AlgoBlast.html#gaaa090c0657270cc5853e9daedf412af1">More...</a><br /></td></tr>
|
||
<tr class="separator:gaaa090c0657270cc5853e9daedf412af1 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab9466c9e46f01ac0c5c0a59c0e8c8577 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gab9466c9e46f01ac0c5c0a59c0e8c8577">SetLowScorePerc</a> (double p)</td></tr>
|
||
<tr class="memdesc:gab9466c9e46f01ac0c5c0a59c0e8c8577 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets low score percentage for ungapped alignments. <a href="group__AlgoBlast.html#gab9466c9e46f01ac0c5c0a59c0e8c8577">More...</a><br /></td></tr>
|
||
<tr class="separator:gab9466c9e46f01ac0c5c0a59c0e8c8577 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga3da7a99e27b962cfbf8b9e3021413f32 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3da7a99e27b962cfbf8b9e3021413f32">GetDbLength</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga3da7a99e27b962cfbf8b9e3021413f32 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns DbLength. <a href="group__AlgoBlast.html#ga3da7a99e27b962cfbf8b9e3021413f32">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3da7a99e27b962cfbf8b9e3021413f32 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga25e4412ffd482f5ea0f90d66b204087b inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga25e4412ffd482f5ea0f90d66b204087b">SetDbLength</a> (<a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> <a class="el" href="ftds14_2freetds_2tds_2iconv_8c.html#a96bbf959016e4411c9e6b9812a8be60a">len</a>)</td></tr>
|
||
<tr class="memdesc:ga25e4412ffd482f5ea0f90d66b204087b inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets DbLength. <a href="group__AlgoBlast.html#ga25e4412ffd482f5ea0f90d66b204087b">More...</a><br /></td></tr>
|
||
<tr class="separator:ga25e4412ffd482f5ea0f90d66b204087b inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5987c8c4cbd928d9983de5780ba36246 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5987c8c4cbd928d9983de5780ba36246">GetDbSeqNum</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5987c8c4cbd928d9983de5780ba36246 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns DbSeqNum. <a href="group__AlgoBlast.html#ga5987c8c4cbd928d9983de5780ba36246">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5987c8c4cbd928d9983de5780ba36246 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga33a847ff9fb0fe032981e8fa24335f69 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga33a847ff9fb0fe032981e8fa24335f69">SetDbSeqNum</a> (unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> num)</td></tr>
|
||
<tr class="memdesc:ga33a847ff9fb0fe032981e8fa24335f69 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets DbSeqNum. <a href="group__AlgoBlast.html#ga33a847ff9fb0fe032981e8fa24335f69">More...</a><br /></td></tr>
|
||
<tr class="separator:ga33a847ff9fb0fe032981e8fa24335f69 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga13dac00be1fa512ee0458fd83dd5715f inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga13dac00be1fa512ee0458fd83dd5715f">GetEffectiveSearchSpace</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga13dac00be1fa512ee0458fd83dd5715f inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Returns EffectiveSearchSpace. <a href="group__AlgoBlast.html#ga13dac00be1fa512ee0458fd83dd5715f">More...</a><br /></td></tr>
|
||
<tr class="separator:ga13dac00be1fa512ee0458fd83dd5715f inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga4f0cd87d58c058174f05cf19843fbaa6 inherit pub_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga4f0cd87d58c058174f05cf19843fbaa6">SetEffectiveSearchSpace</a> (<a class="el" href="group__Portability.html#gac9cc73bc670c02eb6146e38650740642">Int8</a> eff)</td></tr>
|
||
<tr class="memdesc:ga4f0cd87d58c058174f05cf19843fbaa6 inherit pub_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Sets EffectiveSearchSpace. <a href="group__AlgoBlast.html#ga4f0cd87d58c058174f05cf19843fbaa6">More...</a><br /></td></tr>
|
||
<tr class="separator:ga4f0cd87d58c058174f05cf19843fbaa6 inherit pub_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCObject')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">CObject</a> (void)</td></tr>
|
||
<tr class="memdesc:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">More...</a><br /></td></tr>
|
||
<tr class="separator:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">CObject</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src)</td></tr>
|
||
<tr class="memdesc:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">More...</a><br /></td></tr>
|
||
<tr class="separator:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">~CObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCObject.html">CObject</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src) <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">More...</a><br /></td></tr>
|
||
<tr class="separator:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">CanBeDeleted</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object can be deleted. <a href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">More...</a><br /></td></tr>
|
||
<tr class="separator:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">IsAllocatedInPool</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is allocated in memory pool (not system heap) <a href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">Referenced</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced. <a href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">ReferencedOnlyOnce</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced only once. <a href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">More...</a><br /></td></tr>
|
||
<tr class="separator:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">AddReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Add reference to object. <a href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">RemoveReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference to object. <a href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">More...</a><br /></td></tr>
|
||
<tr class="separator:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">ReleaseReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference without deleting object. <a href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">DoNotDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as not allocated in heap – do not delete this object. <a href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">More...</a><br /></td></tr>
|
||
<tr class="separator:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">DoDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as allocated in heap – object can be deleted. <a href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator for memory allocation. <a href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">operator new[]</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new[] operator for 'array' memory allocation. <a href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">More...</a><br /></td></tr>
|
||
<tr class="separator:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">operator delete</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator for memory deallocation. <a href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">More...</a><br /></td></tr>
|
||
<tr class="separator:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">operator delete[]</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete[] operator for memory deallocation. <a href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, void *place)</td></tr>
|
||
<tr class="memdesc:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator. <a href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">More...</a><br /></td></tr>
|
||
<tr class="separator:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">operator delete</a> (void *ptr, void *place)</td></tr>
|
||
<tr class="memdesc:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">More...</a><br /></td></tr>
|
||
<tr class="separator:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator using memory pool. <a href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">operator delete</a> (void *ptr, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga66707761bd1460db43ee9018220deb75">DebugDump</a> (<a class="el" href="classCDebugDumpContext.html">CDebugDumpContext</a> ddc, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method for dumping debug information. <a href="group__Object.html#ga66707761bd1460db43ee9018220deb75">More...</a><br /></td></tr>
|
||
<tr class="separator:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
|
||
<tr class="memitem:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ae8723856215191ef748f19ff73e8ba4e">CDebugDumpable</a> (void)</td></tr>
|
||
<tr class="separator:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#acdeaaedfabb4cc4a64108dbb854f4b51">~CDebugDumpable</a> (void)</td></tr>
|
||
<tr class="separator:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a4ff9ec248a38f17b7d8deb3f78318a37">DebugDumpText</a> (ostream &<a class="el" href="events__unit__test_8cpp.html#ac3c18c078fe416626b6c1dcc3e780245">out</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#aa0101dfdc0ae0cbd0cb1609c96f96229">DebugDumpFormat</a> (<a class="el" href="classCDebugDumpFormatter.html">CDebugDumpFormatter</a> &ddf, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a19047c92521e5f3ad2a14bab26a49b51">DumpToConsole</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
|
||
Protected Member Functions</h2></td></tr>
|
||
<tr class="memitem:ga6a766dbdcf7e691d8c71950e6b0ba483"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6a766dbdcf7e691d8c71950e6b0ba483">SetRemoteProgramAndService_Blast3</a> ()</td></tr>
|
||
<tr class="memdesc:ga6a766dbdcf7e691d8c71950e6b0ba483"><td class="mdescLeft"> </td><td class="mdescRight">Set the program and service name for remote blast. <a href="group__AlgoBlast.html#ga6a766dbdcf7e691d8c71950e6b0ba483">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6a766dbdcf7e691d8c71950e6b0ba483"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga102cf3f2722eb0ec39d439e5942bc089"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga102cf3f2722eb0ec39d439e5942bc089">SetLookupTableDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga102cf3f2722eb0ec39d439e5942bc089"><td class="mdescLeft"> </td><td class="mdescRight">Overrides LookupTableDefaults for nucleotide options. <a href="group__AlgoBlast.html#ga102cf3f2722eb0ec39d439e5942bc089">More...</a><br /></td></tr>
|
||
<tr class="separator:ga102cf3f2722eb0ec39d439e5942bc089"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga1e873c39b392468d8d057c4b1a964bea"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1e873c39b392468d8d057c4b1a964bea">SetMBLookupTableDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga1e873c39b392468d8d057c4b1a964bea"><td class="mdescLeft"> </td><td class="mdescRight">Overrides MBLookupTableDefaults for nucleotide options. <a href="group__AlgoBlast.html#ga1e873c39b392468d8d057c4b1a964bea">More...</a><br /></td></tr>
|
||
<tr class="separator:ga1e873c39b392468d8d057c4b1a964bea"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad57094aad9d120c129fefdbd60386a72"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gad57094aad9d120c129fefdbd60386a72">SetQueryOptionDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:gad57094aad9d120c129fefdbd60386a72"><td class="mdescLeft"> </td><td class="mdescRight">Overrides QueryOptionDefaults for nucleotide options. <a href="group__AlgoBlast.html#gad57094aad9d120c129fefdbd60386a72">More...</a><br /></td></tr>
|
||
<tr class="separator:gad57094aad9d120c129fefdbd60386a72"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9d549184bd5388040da3c7ea37c847e5"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga9d549184bd5388040da3c7ea37c847e5">SetInitialWordOptionsDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga9d549184bd5388040da3c7ea37c847e5"><td class="mdescLeft"> </td><td class="mdescRight">Overrides InitialWordOptionsDefaults for nucleotide options. <a href="group__AlgoBlast.html#ga9d549184bd5388040da3c7ea37c847e5">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9d549184bd5388040da3c7ea37c847e5"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga13a017cca84ccfedee7af7cee3541538"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga13a017cca84ccfedee7af7cee3541538">SetMBInitialWordOptionsDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga13a017cca84ccfedee7af7cee3541538"><td class="mdescLeft"> </td><td class="mdescRight">Overrides MBInitialWordOptionsDefaults for nucleotide options. <a href="group__AlgoBlast.html#ga13a017cca84ccfedee7af7cee3541538">More...</a><br /></td></tr>
|
||
<tr class="separator:ga13a017cca84ccfedee7af7cee3541538"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga7e284672d96d84e98028a465ab2516ab"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7e284672d96d84e98028a465ab2516ab">SetGappedExtensionDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga7e284672d96d84e98028a465ab2516ab"><td class="mdescLeft"> </td><td class="mdescRight">Overrides GappedExtensionDefaults for nucleotide options. <a href="group__AlgoBlast.html#ga7e284672d96d84e98028a465ab2516ab">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7e284672d96d84e98028a465ab2516ab"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaf9400c3ae0e309d1b85b57e4e57a973d"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf9400c3ae0e309d1b85b57e4e57a973d">SetMBGappedExtensionDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:gaf9400c3ae0e309d1b85b57e4e57a973d"><td class="mdescLeft"> </td><td class="mdescRight">Overrides MBGappedExtensionDefaults for nucleotide options. <a href="group__AlgoBlast.html#gaf9400c3ae0e309d1b85b57e4e57a973d">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf9400c3ae0e309d1b85b57e4e57a973d"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0d9c3725daa3dc22d3b7b462977a638e"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0d9c3725daa3dc22d3b7b462977a638e">SetScoringOptionsDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga0d9c3725daa3dc22d3b7b462977a638e"><td class="mdescLeft"> </td><td class="mdescRight">Overrides ScoringOptionsDefaults for nucleotide options. <a href="group__AlgoBlast.html#ga0d9c3725daa3dc22d3b7b462977a638e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0d9c3725daa3dc22d3b7b462977a638e"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga1de961794675cc0634776536ba590580"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1de961794675cc0634776536ba590580">SetMBScoringOptionsDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga1de961794675cc0634776536ba590580"><td class="mdescLeft"> </td><td class="mdescRight">Overrides MBScoringOptionsDefaults for nucleotide options. <a href="group__AlgoBlast.html#ga1de961794675cc0634776536ba590580">More...</a><br /></td></tr>
|
||
<tr class="separator:ga1de961794675cc0634776536ba590580"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga636dff50f1b93b442231bfda91d1c331"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga636dff50f1b93b442231bfda91d1c331">SetHitSavingOptionsDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga636dff50f1b93b442231bfda91d1c331"><td class="mdescLeft"> </td><td class="mdescRight">Overrides HitSavingOptionsDefaults for nucleotide options. <a href="group__AlgoBlast.html#ga636dff50f1b93b442231bfda91d1c331">More...</a><br /></td></tr>
|
||
<tr class="separator:ga636dff50f1b93b442231bfda91d1c331"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gadcf7de5daac30064b21c2523d1a9d610"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gadcf7de5daac30064b21c2523d1a9d610">SetMBHitSavingOptionsDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:gadcf7de5daac30064b21c2523d1a9d610"><td class="mdescLeft"> </td><td class="mdescRight">Overrides MBHitSavingOptionsDefaults for nucleotide options. <a href="group__AlgoBlast.html#gadcf7de5daac30064b21c2523d1a9d610">More...</a><br /></td></tr>
|
||
<tr class="separator:gadcf7de5daac30064b21c2523d1a9d610"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga6392999b3893413e7cd5d682748b13cb"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga6392999b3893413e7cd5d682748b13cb">SetEffectiveLengthsOptionsDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga6392999b3893413e7cd5d682748b13cb"><td class="mdescLeft"> </td><td class="mdescRight">Overrides EffectiveLengthsOptionsDefaults for nucleotide options. <a href="group__AlgoBlast.html#ga6392999b3893413e7cd5d682748b13cb">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6392999b3893413e7cd5d682748b13cb"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga7533379640db049af63b3b9d88cd600e"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7533379640db049af63b3b9d88cd600e">SetSubjectSequenceOptionsDefaults</a> ()</td></tr>
|
||
<tr class="memdesc:ga7533379640db049af63b3b9d88cd600e"><td class="mdescLeft"> </td><td class="mdescRight">Overrides SubjectSequenceOptionsDefaults for nucleotide options. <a href="group__AlgoBlast.html#ga7533379640db049af63b3b9d88cd600e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7533379640db049af63b3b9d88cd600e"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pro_methods_classCBlastOptionsHandle"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classCBlastOptionsHandle')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a></td></tr>
|
||
<tr class="memitem:ga7818813fcb1843d88001d529dbc2fa75 inherit pro_methods_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7818813fcb1843d88001d529dbc2fa75">CBlastOptionsHandle</a> (<a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastOptions.html">CBlastOptions</a> > opt)</td></tr>
|
||
<tr class="memdesc:ga7818813fcb1843d88001d529dbc2fa75 inherit pro_methods_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Create Options Handle from Existing <a class="el" href="classCBlastOptions.html" title="Encapsulates ALL the BLAST algorithm's options.">CBlastOptions</a> Object. <a href="group__AlgoBlast.html#ga7818813fcb1843d88001d529dbc2fa75">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7818813fcb1843d88001d529dbc2fa75 inherit pro_methods_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pro_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classCObject')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">DeleteThis</a> (void)</td></tr>
|
||
<tr class="memdesc:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Virtual method "deleting" this object. <a href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
|
||
Private Member Functions</h2></td></tr>
|
||
<tr class="memitem:ga65ddf2bf83751d46c0f5955c3ff71751"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga65ddf2bf83751d46c0f5955c3ff71751">CBlastNucleotideOptionsHandle</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastNucleotideOptionsHandle.html">CBlastNucleotideOptionsHandle</a> &rhs)</td></tr>
|
||
<tr class="memdesc:ga65ddf2bf83751d46c0f5955c3ff71751"><td class="mdescLeft"> </td><td class="mdescRight">Disallow copy constructor. <a href="group__AlgoBlast.html#ga65ddf2bf83751d46c0f5955c3ff71751">More...</a><br /></td></tr>
|
||
<tr class="separator:ga65ddf2bf83751d46c0f5955c3ff71751"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gac6477f8eb72a114a2f18bbf1703914d3"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBlastNucleotideOptionsHandle.html">CBlastNucleotideOptionsHandle</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gac6477f8eb72a114a2f18bbf1703914d3">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastNucleotideOptionsHandle.html">CBlastNucleotideOptionsHandle</a> &rhs)</td></tr>
|
||
<tr class="memdesc:gac6477f8eb72a114a2f18bbf1703914d3"><td class="mdescLeft"> </td><td class="mdescRight">Disallow assignment operator. <a href="group__AlgoBlast.html#gac6477f8eb72a114a2f18bbf1703914d3">More...</a><br /></td></tr>
|
||
<tr class="separator:gac6477f8eb72a114a2f18bbf1703914d3"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
|
||
Additional Inherited Members</h2></td></tr>
|
||
<tr class="inherit_header pub_types_classCBlastOptionsHandle"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCBlastOptionsHandle')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a></td></tr>
|
||
<tr class="memitem:gae8894f418664b9ffc30d75e716b797c8 inherit pub_types_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCBlastOptions.html#a92083ed20564d2c4e2f589744ea1c8ab">CBlastOptions::EAPILocality</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae8894f418664b9ffc30d75e716b797c8">EAPILocality</a></td></tr>
|
||
<tr class="memdesc:gae8894f418664b9ffc30d75e716b797c8 inherit pub_types_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Convenience define. <a href="group__AlgoBlast.html#gae8894f418664b9ffc30d75e716b797c8">More...</a><br /></td></tr>
|
||
<tr class="separator:gae8894f418664b9ffc30d75e716b797c8 inherit pub_types_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_types_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCObject')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> { <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca2b8c59f649cc88eeb7eaeba939e2838d">eAllocFillNone</a> = 1
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca336d7ff658b673c2e8fe3aed9b155f04">eAllocFillZero</a>
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588ccab3631bf1c36b77f950d94372290deb76">eAllocFillPattern</a>
|
||
}</td></tr>
|
||
<tr class="memdesc:ga3cf5f3ac0aef32c4aab1fa66513588cc"><td class="mdescLeft"> </td><td class="mdescRight">Control filling of newly allocated memory. <a href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCObjectCounterLocker.html">CObjectCounterLocker</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">TLockerType</a></td></tr>
|
||
<tr class="memdesc:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Default locker type for <a class="el" href="classCRef.html" title="CRef –.">CRef</a>. <a href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef atomic< <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">TCounter</a></td></tr>
|
||
<tr class="memdesc:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Counter type is CAtomiCounter. <a href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">More...</a><br /></td></tr>
|
||
<tr class="separator:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a></td></tr>
|
||
<tr class="memdesc:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Alias for value type of counter. <a href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCObject')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">ThrowNullPointerException</a> (void)</td></tr>
|
||
<tr class="memdesc:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method to throw null pointer exception. <a href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">More...</a><br /></td></tr>
|
||
<tr class="separator:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae042a181e665dd40945c1c1a7a6bc5d1">ThrowNullPointerException</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> type_info &<a class="el" href="structtype.html">type</a>)</td></tr>
|
||
<tr class="separator:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga4b6f1beef2a1f37c68f7f3b1aac471d8">GetAllocFillMode</a> (void)</td></tr>
|
||
<tr class="separator:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga42eceef165a83cc081837a373ab6dd67">SetAllocFillMode</a> (<a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> <a class="el" href="mdb__load_8c.html#a1ea5d0cb93f22f7d0fdf804bd68c3326">mode</a>)</td></tr>
|
||
<tr class="separator:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">SetAllocFillMode</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Set mode from configuration parameter value. <a href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">More...</a><br /></td></tr>
|
||
<tr class="separator:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
|
||
<tr class="memitem:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ab6ba54280c562230f65733cca0560c83">EnableDebugDump</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> on)</td></tr>
|
||
<tr class="separator:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pub_static_attribs_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCObject')"><img src="closed.png" alt="-"/> Static Public Attributes inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">eCounterBitsCanBeDeleted</a> = 1 << 0</td></tr>
|
||
<tr class="memdesc:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define possible object states. <a href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">eCounterBitsInPlainHeap</a> = 1 << 1</td></tr>
|
||
<tr class="memdesc:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Heap signature was found. <a href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">More...</a><br /></td></tr>
|
||
<tr class="separator:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">eCounterBitsPlaceMask</a></td></tr>
|
||
<tr class="memdesc:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mask for 'in heap' state flags. <a href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">More...</a><br /></td></tr>
|
||
<tr class="separator:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">eCounterStep</a> = 1 << 2</td></tr>
|
||
<tr class="memdesc:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Skip over the "in heap" bits. <a href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">eCounterValid</a> = <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>(1) << (sizeof(<a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>) * 8 - 2)</td></tr>
|
||
<tr class="memdesc:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Minimal value for valid objects (reference counter is zero) Must be a single bit value. <a href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">More...</a><br /></td></tr>
|
||
<tr class="separator:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">eCounterStateMask</a></td></tr>
|
||
<tr class="memdesc:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Valid object, and object in heap. <a href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">More...</a><br /></td></tr>
|
||
<tr class="separator:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="inherit_header pro_attribs_classCBlastOptionsHandle"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classCBlastOptionsHandle')"><img src="closed.png" alt="-"/> Protected Attributes inherited from <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a></td></tr>
|
||
<tr class="memitem:ga576f6728f136af83e2102ab5e69d5117 inherit pro_attribs_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastOptions.html">CBlastOptions</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga576f6728f136af83e2102ab5e69d5117">m_Opts</a></td></tr>
|
||
<tr class="memdesc:ga576f6728f136af83e2102ab5e69d5117 inherit pro_attribs_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Data type this class controls access to. <a href="group__AlgoBlast.html#ga576f6728f136af83e2102ab5e69d5117">More...</a><br /></td></tr>
|
||
<tr class="separator:ga576f6728f136af83e2102ab5e69d5117 inherit pro_attribs_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga7eb4985ac2cc1dbc716ae3edc66afb7f inherit pro_attribs_classCBlastOptionsHandle"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7eb4985ac2cc1dbc716ae3edc66afb7f">m_DefaultsMode</a></td></tr>
|
||
<tr class="memdesc:ga7eb4985ac2cc1dbc716ae3edc66afb7f inherit pro_attribs_classCBlastOptionsHandle"><td class="mdescLeft"> </td><td class="mdescRight">Set to true when 'remote' options should ignore setters. <a href="group__AlgoBlast.html#ga7eb4985ac2cc1dbc716ae3edc66afb7f">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7eb4985ac2cc1dbc716ae3edc66afb7f inherit pro_attribs_classCBlastOptionsHandle"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table>
|
||
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||
<div class="textblock"><p>Handle to the nucleotide-nucleotide options to the BLAST algorithm. </p>
|
||
<p>Adapter class for nucleotide-nucleotide BLAST comparisons. Exposes an interface to allow manipulation the options that are relevant to this type of search.</p>
|
||
<p><a class="el" href="classNB.html">NB</a>: By default, traditional megablast defaults are used. If blastn defaults are desired, please call the appropriate member function:</p>
|
||
<p>void <a class="el" href="group__AlgoBlast.html#ga6b3c0e438d4c6cbc4006443b7a83873d" title="Sets TraditionalBlastnDefaults.">SetTraditionalBlastnDefaults()</a>; void <a class="el" href="group__AlgoBlast.html#ga945791bc5b566e8af49eece92c460ecd" title="Sets TraditionalMegablastDefaults.">SetTraditionalMegablastDefaults()</a>; </p>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="blast__nucl__options_8hpp_source.html#l00058">58</a> of file <a class="el" href="blast__nucl__options_8hpp_source.html">blast_nucl_options.hpp</a>.</p>
|
||
</div><hr/>The documentation for this class was generated from the following files:<ul>
|
||
<li>include/algo/blast/api/<a class="el" href="blast__nucl__options_8hpp_source.html">blast_nucl_options.hpp</a></li>
|
||
<li>src/algo/blast/api/<a class="el" href="blast__nucl__options_8cpp_source.html">blast_nucl_options.cpp</a></li>
|
||
</ul>
|
||
</div><!-- contents -->
|
||
<!-- start footer part -->
|
||
<hr class="footer"/><address class="footer"><small>
|
||
Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.0
|
||
</small></address>
|
||
<address style="align: right;"><small>Modified on Fri Sep 20 14:56:59 2024 by modify_doxy.py rev. 669887</small></address>
|
||
</body>
|
||
</html>
|