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417 lines
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<div id="projectname">NCBI C++ ToolKit
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<a href="#pub-methods">Public Member Functions</a> |
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<a href="#pub-static-methods">Static Public Member Functions</a> |
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<a href="#pro-methods">Protected Member Functions</a> |
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<a href="#pri-methods">Private Member Functions</a> |
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<a href="#pri-attribs">Private Attributes</a> |
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<a href="#friends">Friends</a> |
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<div class="title">CBl2Seq Class Reference<div class="ingroups"><a class="el" href="group__ALGO.html">ALGORITHMS</a> » <a class="el" href="group__AlgoBlast.html">BLAST (Basic Local Alignment Search Tool)</a></div></div> </div>
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<p>
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<a class="el" href = "https://www.ncbi.nlm.nih.gov/toolkitbookgh/?term=CBl2Seq">Search Toolkit Book for <i>CBl2Seq</i></a>
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</p>
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<p>Runs the BLAST algorithm between 2 sequences.
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<a href="classCBl2Seq.html#details">More...</a></p>
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<p><code>#include <<a class="el" href="bl2seq_8hpp_source.html">algo/blast/api/bl2seq.hpp</a>></code></p>
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<div id="dynsection-0" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for CBl2Seq:</div>
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<div id="dynsection-0-content" class="dyncontent" style="display:none;">
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<div class="center"><img src="img__inherit__graph/classCBl2Seq__inherit__graph.png" border="0" usemap="#aCBl2Seq_inherit__map" alt="Inheritance graph"/></div>
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<div id="dynsection-1" onclick="return toggleVisibility(this)" class="dynheader closed" style="cursor:pointer;">
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<img id="dynsection-1-trigger" src="closed.png" alt="+"/> Collaboration diagram for CBl2Seq:</div>
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<div id="dynsection-1-summary" class="dynsummary" style="display:block;">
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</div>
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<div id="dynsection-1-content" class="dyncontent" style="display:none;">
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<div class="center"><img src="img__coll__graph/classCBl2Seq__coll__graph.png" border="0" usemap="#aCBl2Seq_coll__map" alt="Collaboration graph"/></div>
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<table class="memberdecls">
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
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Public Member Functions</h2></td></tr>
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<tr class="memitem:gadc1143178e904a4cd8d2cc4e2e5597f2"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gadc1143178e904a4cd8d2cc4e2e5597f2">CBl2Seq</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeqLoc.html">SSeqLoc</a> &<a class="el" href="ftds14_2freetds_2tds_2unittests_2utf8__1_8c.html#aa590f90371629b8ec9b73bebe4d08501">query</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeqLoc.html">SSeqLoc</a> &<a class="el" href="struct__dp__demo_8cpp.html#a4bf92df5572aed4b44e651471f3b4f3b">subject</a>, <a class="el" href="blast__types_8hpp.html#ae1c0ad647974cd781398aef388b3cf05">EProgram</a> p)</td></tr>
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<tr class="memdesc:gadc1143178e904a4cd8d2cc4e2e5597f2"><td class="mdescLeft"> </td><td class="mdescRight">Constructor to compare 2 sequences with default options. <a href="group__AlgoBlast.html#gadc1143178e904a4cd8d2cc4e2e5597f2">More...</a><br /></td></tr>
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<tr class="separator:gadc1143178e904a4cd8d2cc4e2e5597f2"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaddf6a26993dc228c88172554ddc41e15"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaddf6a26993dc228c88172554ddc41e15">CBl2Seq</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeqLoc.html">SSeqLoc</a> &<a class="el" href="ftds14_2freetds_2tds_2unittests_2utf8__1_8c.html#aa590f90371629b8ec9b73bebe4d08501">query</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> &subjects, <a class="el" href="blast__types_8hpp.html#ae1c0ad647974cd781398aef388b3cf05">EProgram</a> p, <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> dbscan_mode=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a65e9886d74aaee76545e83dd09011727">false</a>)</td></tr>
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<tr class="memdesc:gaddf6a26993dc228c88172554ddc41e15"><td class="mdescLeft"> </td><td class="mdescRight">Constructor to compare query against all subject sequences with default options. <a href="group__AlgoBlast.html#gaddf6a26993dc228c88172554ddc41e15">More...</a><br /></td></tr>
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<tr class="separator:gaddf6a26993dc228c88172554ddc41e15"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gabe63c5ede00f719a35d9379eecd39b9d"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gabe63c5ede00f719a35d9379eecd39b9d">CBl2Seq</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> &queries, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> &subjects, <a class="el" href="blast__types_8hpp.html#ae1c0ad647974cd781398aef388b3cf05">EProgram</a> p, <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> dbscan_mode=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a65e9886d74aaee76545e83dd09011727">false</a>)</td></tr>
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<tr class="memdesc:gabe63c5ede00f719a35d9379eecd39b9d"><td class="mdescLeft"> </td><td class="mdescRight">Constructor to allow query concatenation with default options. <a href="group__AlgoBlast.html#gabe63c5ede00f719a35d9379eecd39b9d">More...</a><br /></td></tr>
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<tr class="separator:gabe63c5ede00f719a35d9379eecd39b9d"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga282e72f34dd08a685a2ebfade482914b"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga282e72f34dd08a685a2ebfade482914b">CBl2Seq</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeqLoc.html">SSeqLoc</a> &<a class="el" href="ftds14_2freetds_2tds_2unittests_2utf8__1_8c.html#aa590f90371629b8ec9b73bebe4d08501">query</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeqLoc.html">SSeqLoc</a> &<a class="el" href="struct__dp__demo_8cpp.html#a4bf92df5572aed4b44e651471f3b4f3b">subject</a>, <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a> &opts)</td></tr>
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<tr class="memdesc:ga282e72f34dd08a685a2ebfade482914b"><td class="mdescLeft"> </td><td class="mdescRight">Constructor to compare 2 sequences with specified options. <a href="group__AlgoBlast.html#ga282e72f34dd08a685a2ebfade482914b">More...</a><br /></td></tr>
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<tr class="separator:ga282e72f34dd08a685a2ebfade482914b"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga55fc2b8585dcb9c2def9d4f2157184e8"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga55fc2b8585dcb9c2def9d4f2157184e8">CBl2Seq</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeqLoc.html">SSeqLoc</a> &<a class="el" href="ftds14_2freetds_2tds_2unittests_2utf8__1_8c.html#aa590f90371629b8ec9b73bebe4d08501">query</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> &subjects, <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a> &opts, <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> dbscan_mode=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a65e9886d74aaee76545e83dd09011727">false</a>)</td></tr>
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<tr class="memdesc:ga55fc2b8585dcb9c2def9d4f2157184e8"><td class="mdescLeft"> </td><td class="mdescRight">Constructor to compare query against all subject sequences with specified options. <a href="group__AlgoBlast.html#ga55fc2b8585dcb9c2def9d4f2157184e8">More...</a><br /></td></tr>
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<tr class="separator:ga55fc2b8585dcb9c2def9d4f2157184e8"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga14ecd5f8a43a8ccdcdaf079999e4e30d"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga14ecd5f8a43a8ccdcdaf079999e4e30d">CBl2Seq</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> &queries, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> &subjects, <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a> &opts, <a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> dbscan_mode=<a class="el" href="ftds14_2freetds_2freetds_2bool_8h.html#a65e9886d74aaee76545e83dd09011727">false</a>)</td></tr>
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<tr class="memdesc:ga14ecd5f8a43a8ccdcdaf079999e4e30d"><td class="mdescLeft"> </td><td class="mdescRight">Constructor to allow query concatenation with specified options. <a href="group__AlgoBlast.html#ga14ecd5f8a43a8ccdcdaf079999e4e30d">More...</a><br /></td></tr>
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<tr class="separator:ga14ecd5f8a43a8ccdcdaf079999e4e30d"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga1731b16255f2549d3f330d6653aa745c"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1731b16255f2549d3f330d6653aa745c">~CBl2Seq</a> ()</td></tr>
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<tr class="memdesc:ga1731b16255f2549d3f330d6653aa745c"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="group__AlgoBlast.html#ga1731b16255f2549d3f330d6653aa745c">More...</a><br /></td></tr>
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<tr class="separator:ga1731b16255f2549d3f330d6653aa745c"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gae03c57169279c557877192a914230776"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae03c57169279c557877192a914230776">SetQuery</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeqLoc.html">SSeqLoc</a> &<a class="el" href="ftds14_2freetds_2tds_2unittests_2utf8__1_8c.html#aa590f90371629b8ec9b73bebe4d08501">query</a>)</td></tr>
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<tr class="memdesc:gae03c57169279c557877192a914230776"><td class="mdescLeft"> </td><td class="mdescRight">Set the query. <a href="group__AlgoBlast.html#gae03c57169279c557877192a914230776">More...</a><br /></td></tr>
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<tr class="separator:gae03c57169279c557877192a914230776"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga3fd98744d17e01091e3be8c60f8bd9a1"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeqLoc.html">SSeqLoc</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3fd98744d17e01091e3be8c60f8bd9a1">GetQuery</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga3fd98744d17e01091e3be8c60f8bd9a1"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve the query sequence. <a href="group__AlgoBlast.html#ga3fd98744d17e01091e3be8c60f8bd9a1">More...</a><br /></td></tr>
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<tr class="separator:ga3fd98744d17e01091e3be8c60f8bd9a1"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga58ec2878f0a3b8aa8ed4d4889a9f9540"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga58ec2878f0a3b8aa8ed4d4889a9f9540">SetQueries</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> &queries)</td></tr>
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<tr class="memdesc:ga58ec2878f0a3b8aa8ed4d4889a9f9540"><td class="mdescLeft"> </td><td class="mdescRight">Set a vector of query sequences for a concatenated search. <a href="group__AlgoBlast.html#ga58ec2878f0a3b8aa8ed4d4889a9f9540">More...</a><br /></td></tr>
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<tr class="separator:ga58ec2878f0a3b8aa8ed4d4889a9f9540"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaad5b96cc914eb2dcd33ad03229b97ef9"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaad5b96cc914eb2dcd33ad03229b97ef9">GetQueries</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaad5b96cc914eb2dcd33ad03229b97ef9"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve a vector of query sequences. <a href="group__AlgoBlast.html#gaad5b96cc914eb2dcd33ad03229b97ef9">More...</a><br /></td></tr>
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<tr class="separator:gaad5b96cc914eb2dcd33ad03229b97ef9"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga1df0b4ba84f06dc021f33457890a334b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1df0b4ba84f06dc021f33457890a334b">SetSubject</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeqLoc.html">SSeqLoc</a> &<a class="el" href="struct__dp__demo_8cpp.html#a4bf92df5572aed4b44e651471f3b4f3b">subject</a>)</td></tr>
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<tr class="memdesc:ga1df0b4ba84f06dc021f33457890a334b"><td class="mdescLeft"> </td><td class="mdescRight">Set the subject sequence. <a href="group__AlgoBlast.html#ga1df0b4ba84f06dc021f33457890a334b">More...</a><br /></td></tr>
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<tr class="separator:ga1df0b4ba84f06dc021f33457890a334b"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga1adaeeeb475b274fa9e079517bc93f52"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="structSSeqLoc.html">SSeqLoc</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1adaeeeb475b274fa9e079517bc93f52">GetSubject</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga1adaeeeb475b274fa9e079517bc93f52"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve the subject sequence. <a href="group__AlgoBlast.html#ga1adaeeeb475b274fa9e079517bc93f52">More...</a><br /></td></tr>
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<tr class="separator:ga1adaeeeb475b274fa9e079517bc93f52"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga36993e6e5ca762b7addf6e5f9c871744"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga36993e6e5ca762b7addf6e5f9c871744">SetSubjects</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> &subjects)</td></tr>
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<tr class="memdesc:ga36993e6e5ca762b7addf6e5f9c871744"><td class="mdescLeft"> </td><td class="mdescRight">Set a vector of subject sequences. <a href="group__AlgoBlast.html#ga36993e6e5ca762b7addf6e5f9c871744">More...</a><br /></td></tr>
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<tr class="separator:ga36993e6e5ca762b7addf6e5f9c871744"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaf300276c8caf693019e95910940a985d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf300276c8caf693019e95910940a985d">GetSubjects</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gaf300276c8caf693019e95910940a985d"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve a vector of subject sequences. <a href="group__AlgoBlast.html#gaf300276c8caf693019e95910940a985d">More...</a><br /></td></tr>
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<tr class="separator:gaf300276c8caf693019e95910940a985d"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaae48fd02aa22287f8d8535a1231c20c0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaae48fd02aa22287f8d8535a1231c20c0">SetOptionsHandle</a> ()</td></tr>
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<tr class="memdesc:gaae48fd02aa22287f8d8535a1231c20c0"><td class="mdescLeft"> </td><td class="mdescRight">Set the options handle. <a href="group__AlgoBlast.html#gaae48fd02aa22287f8d8535a1231c20c0">More...</a><br /></td></tr>
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<tr class="separator:gaae48fd02aa22287f8d8535a1231c20c0"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga1d5c4eb42522d89199e26b82320891fe"><td class="memItemLeft" align="right" valign="top"><a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1d5c4eb42522d89199e26b82320891fe">GetOptionsHandle</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga1d5c4eb42522d89199e26b82320891fe"><td class="mdescLeft"> </td><td class="mdescRight">Retrieve the options handle. <a href="group__AlgoBlast.html#ga1d5c4eb42522d89199e26b82320891fe">More...</a><br /></td></tr>
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<tr class="separator:ga1d5c4eb42522d89199e26b82320891fe"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga7d833fe46e1532a64070f6e7e1005d46"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="blast__types_8hpp.html#a1e3e43ad38b78139db1afdfe5c72e991">TSeqAlignVector</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga7d833fe46e1532a64070f6e7e1005d46">Run</a> ()</td></tr>
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<tr class="memdesc:ga7d833fe46e1532a64070f6e7e1005d46"><td class="mdescLeft"> </td><td class="mdescRight">Perform BLAST search Assuming N queries and M subjects, the structure of the returned vector is as follows, with types indicated in parenthesis: TSeqAlignVector = [ {Results for query 1 and subject 1 (Seq-align-set)}, {Results for query 1 and subject 2 (Seq-align-set)}, ... <a href="group__AlgoBlast.html#ga7d833fe46e1532a64070f6e7e1005d46">More...</a><br /></td></tr>
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<tr class="separator:ga7d833fe46e1532a64070f6e7e1005d46"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga920839b0794ab5ac09b951c26d67052f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCSearchResultSet.html">CSearchResultSet</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga920839b0794ab5ac09b951c26d67052f">RunEx</a> ()</td></tr>
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<tr class="memdesc:ga920839b0794ab5ac09b951c26d67052f"><td class="mdescLeft"> </td><td class="mdescRight">Performs the same functionality as <a class="el" href="group__AlgoBlast.html#ga7d833fe46e1532a64070f6e7e1005d46" title="Perform BLAST search Assuming N queries and M subjects, the structure of the returned vector is as fo...">Run()</a>, but it returns a different data type. <a href="group__AlgoBlast.html#ga920839b0794ab5ac09b951c26d67052f">More...</a><br /></td></tr>
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<tr class="separator:ga920839b0794ab5ac09b951c26d67052f"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gae2ddfb81868a11f195635c422c5bcb39"><td class="memItemLeft" align="right" valign="top"><a class="el" href="seqlocinfo_8hpp.html#a7807a2ac27d1103272461fb78b4fbbff">TSeqLocInfoVector</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gae2ddfb81868a11f195635c422c5bcb39">GetFilteredQueryRegions</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gae2ddfb81868a11f195635c422c5bcb39"><td class="mdescLeft"> </td><td class="mdescRight">Retrieves regions filtered on the query/queries. <a href="group__AlgoBlast.html#gae2ddfb81868a11f195635c422c5bcb39">More...</a><br /></td></tr>
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<tr class="separator:gae2ddfb81868a11f195635c422c5bcb39"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga3567eeb9d758a895bac6efd63763e499"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3567eeb9d758a895bac6efd63763e499">GetFilteredSubjectRegions</a> (vector< <a class="el" href="seqlocinfo_8hpp.html#a7807a2ac27d1103272461fb78b4fbbff">TSeqLocInfoVector</a> > &retval) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga3567eeb9d758a895bac6efd63763e499"><td class="mdescLeft"> </td><td class="mdescRight">Retrieves regions filtered on the subject sequence(s) <a href="group__AlgoBlast.html#ga3567eeb9d758a895bac6efd63763e499">More...</a><br /></td></tr>
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<tr class="separator:ga3567eeb9d758a895bac6efd63763e499"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gafd4c46281edb3a609daf85dd5a18ba00"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structBlastDiagnostics.html">BlastDiagnostics</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gafd4c46281edb3a609daf85dd5a18ba00">GetDiagnostics</a> () <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:gafd4c46281edb3a609daf85dd5a18ba00"><td class="mdescLeft"> </td><td class="mdescRight">Retrieves the diagnostics information returned from the engine. <a href="group__AlgoBlast.html#gafd4c46281edb3a609daf85dd5a18ba00">More...</a><br /></td></tr>
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<tr class="separator:gafd4c46281edb3a609daf85dd5a18ba00"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga96e1c8b0d77c995287e3a9aad756072b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga96e1c8b0d77c995287e3a9aad756072b">GetAncillaryResults</a> (<a class="el" href="group__AlgoBlast.html#gade842c867ed4fb95d3621bf006e35256">CSearchResultSet::TAncillaryVector</a> &retval) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga96e1c8b0d77c995287e3a9aad756072b"><td class="mdescLeft"> </td><td class="mdescRight">Get the ancillary results for a BLAST search (to be used with the <a class="el" href="group__AlgoBlast.html#ga7d833fe46e1532a64070f6e7e1005d46" title="Perform BLAST search Assuming N queries and M subjects, the structure of the returned vector is as fo...">Run()</a> method) <a href="group__AlgoBlast.html#ga96e1c8b0d77c995287e3a9aad756072b">More...</a><br /></td></tr>
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<tr class="separator:ga96e1c8b0d77c995287e3a9aad756072b"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga28d9e208175d4cea38d6d66e0e59712a"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga28d9e208175d4cea38d6d66e0e59712a">GetMessages</a> (<a class="el" href="classTSearchMessages.html">TSearchMessages</a> &messages) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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<tr class="memdesc:ga28d9e208175d4cea38d6d66e0e59712a"><td class="mdescLeft"> </td><td class="mdescRight">Returns error messages/warnings. <a href="group__AlgoBlast.html#ga28d9e208175d4cea38d6d66e0e59712a">More...</a><br /></td></tr>
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<tr class="separator:ga28d9e208175d4cea38d6d66e0e59712a"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga546378f725a880807ac685715a46c1b5"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__def_8h.html#a3d0d4e6f739bff33d3cd532f63fafb18">TInterruptFnPtr</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga546378f725a880807ac685715a46c1b5">SetInterruptCallback</a> (<a class="el" href="blast__def_8h.html#a3d0d4e6f739bff33d3cd532f63fafb18">TInterruptFnPtr</a> fnptr, void *user_data=<a class="el" href="group__CToolsBridge.html#ga070d2ce7b6bb7e5c05602aa8c308d0c4">NULL</a>)</td></tr>
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<tr class="memdesc:ga546378f725a880807ac685715a46c1b5"><td class="mdescLeft"> </td><td class="mdescRight">Set a function callback to be invoked by the CORE of BLAST to allow interrupting a BLAST search in progress. <a href="group__AlgoBlast.html#ga546378f725a880807ac685715a46c1b5">More...</a><br /></td></tr>
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<tr class="separator:ga546378f725a880807ac685715a46c1b5"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="inherit_header pub_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCObject')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
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<tr class="memitem:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">CObject</a> (void)</td></tr>
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<tr class="memdesc:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Constructor. <a href="group__Object.html#gae38a8715a230c7ed588993c0206d8cb4">More...</a><br /></td></tr>
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<tr class="separator:gae38a8715a230c7ed588993c0206d8cb4 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">CObject</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src)</td></tr>
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<tr class="memdesc:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="group__Object.html#gae89833a29aad16e7cb252314d2e7f4ab">More...</a><br /></td></tr>
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<tr class="separator:gae89833a29aad16e7cb252314d2e7f4ab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">~CObject</a> (void)</td></tr>
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<tr class="memdesc:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Destructor. <a href="group__Object.html#ga5125d96ff932bcd471a734fd174b2022">More...</a><br /></td></tr>
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<tr class="separator:ga5125d96ff932bcd471a734fd174b2022 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCObject.html">CObject</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCObject.html">CObject</a> &src) <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
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<tr class="memdesc:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="group__Object.html#gab2090742c0465c4229f6e0b57c2de566">More...</a><br /></td></tr>
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<tr class="separator:gab2090742c0465c4229f6e0b57c2de566 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">CanBeDeleted</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
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<tr class="memdesc:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object can be deleted. <a href="group__Object.html#gaad370ec0ee157f6082b9845338cb2809">More...</a><br /></td></tr>
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<tr class="separator:gaad370ec0ee157f6082b9845338cb2809 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">IsAllocatedInPool</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is allocated in memory pool (not system heap) <a href="group__Object.html#gaf5cddacd7194af14e759f3d89325679b">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf5cddacd7194af14e759f3d89325679b inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">Referenced</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced. <a href="group__Object.html#ga9f9bbe6d075c90238a43585999d303d9">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9f9bbe6d075c90238a43585999d303d9 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">ReferencedOnlyOnce</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Exception.html#ga8b97bb3687e603604470b18da8e56e91">THROWS_NONE</a></td></tr>
|
||
<tr class="memdesc:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="structCheck.html">Check</a> if object is referenced only once. <a href="group__Object.html#gaac3600b16f957a209f857aff7f79bf91">More...</a><br /></td></tr>
|
||
<tr class="separator:gaac3600b16f957a209f857aff7f79bf91 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">AddReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Add reference to object. <a href="group__Object.html#ga7161c8a13b08e627baa2ea0d75d679dc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7161c8a13b08e627baa2ea0d75d679dc inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">RemoveReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference to object. <a href="group__Object.html#ga827e9544b3a20642fcb736160f203bab">More...</a><br /></td></tr>
|
||
<tr class="separator:ga827e9544b3a20642fcb736160f203bab inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">ReleaseReference</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Remove reference without deleting object. <a href="group__Object.html#ga5f08a74874b48c0e4a3d8e54343d4c90">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5f08a74874b48c0e4a3d8e54343d4c90 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">DoNotDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as not allocated in heap – do not delete this object. <a href="group__Object.html#ga52d3bc7d4f90411a190da81d7fd8d931">More...</a><br /></td></tr>
|
||
<tr class="separator:ga52d3bc7d4f90411a190da81d7fd8d931 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">DoDeleteThisObject</a> (void)</td></tr>
|
||
<tr class="memdesc:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mark this object as allocated in heap – object can be deleted. <a href="group__Object.html#ga35fd00918a29221f823c8e8d5d67fee2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga35fd00918a29221f823c8e8d5d67fee2 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator for memory allocation. <a href="group__Object.html#ga9a8f931b70ac3730f364ad6078580424">More...</a><br /></td></tr>
|
||
<tr class="separator:ga9a8f931b70ac3730f364ad6078580424 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">operator new[]</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>)</td></tr>
|
||
<tr class="memdesc:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new[] operator for 'array' memory allocation. <a href="group__Object.html#gabb964e1c3096b1efe242a3c63bbb8120">More...</a><br /></td></tr>
|
||
<tr class="separator:gabb964e1c3096b1efe242a3c63bbb8120 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">operator delete</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator for memory deallocation. <a href="group__Object.html#gafde2770a20ee356b8a60cc81cca42366">More...</a><br /></td></tr>
|
||
<tr class="separator:gafde2770a20ee356b8a60cc81cca42366 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">operator delete[]</a> (void *ptr)</td></tr>
|
||
<tr class="memdesc:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete[] operator for memory deallocation. <a href="group__Object.html#ga5ea75357098dc7fea6cca8fb81620856">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5ea75357098dc7fea6cca8fb81620856 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, void *place)</td></tr>
|
||
<tr class="memdesc:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator. <a href="group__Object.html#ga37f436bf6f5a3d46b7363e104fccedf3">More...</a><br /></td></tr>
|
||
<tr class="separator:ga37f436bf6f5a3d46b7363e104fccedf3 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">operator delete</a> (void *ptr, void *place)</td></tr>
|
||
<tr class="memdesc:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga54499c2fd0381ad8505bc120d5da84ff">More...</a><br /></td></tr>
|
||
<tr class="separator:ga54499c2fd0381ad8505bc120d5da84ff inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">operator new</a> (size_t <a class="el" href="introspection__html_8hpp.html#ac27165163e7cf75ff278799c2eedf09a">size</a>, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define new operator using memory pool. <a href="group__Object.html#ga981e7384172734070f47a3a9b53d0c3c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga981e7384172734070f47a3a9b53d0c3c inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">operator delete</a> (void *ptr, <a class="el" href="classCObjectMemoryPool.html">CObjectMemoryPool</a> *place)</td></tr>
|
||
<tr class="memdesc:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define delete operator. <a href="group__Object.html#ga5c29219485b863e8a846c3076d321c7e">More...</a><br /></td></tr>
|
||
<tr class="separator:ga5c29219485b863e8a846c3076d321c7e inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga66707761bd1460db43ee9018220deb75">DebugDump</a> (<a class="el" href="classCDebugDumpContext.html">CDebugDumpContext</a> ddc, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="memdesc:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method for dumping debug information. <a href="group__Object.html#ga66707761bd1460db43ee9018220deb75">More...</a><br /></td></tr>
|
||
<tr class="separator:ga66707761bd1460db43ee9018220deb75 inherit pub_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
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||
<tr class="memitem:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ae8723856215191ef748f19ff73e8ba4e">CDebugDumpable</a> (void)</td></tr>
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||
<tr class="separator:ae8723856215191ef748f19ff73e8ba4e inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#acdeaaedfabb4cc4a64108dbb854f4b51">~CDebugDumpable</a> (void)</td></tr>
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||
<tr class="separator:acdeaaedfabb4cc4a64108dbb854f4b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a4ff9ec248a38f17b7d8deb3f78318a37">DebugDumpText</a> (ostream &<a class="el" href="events__unit__test_8cpp.html#ac3c18c078fe416626b6c1dcc3e780245">out</a>, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="separator:a4ff9ec248a38f17b7d8deb3f78318a37 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#aa0101dfdc0ae0cbd0cb1609c96f96229">DebugDumpFormat</a> (<a class="el" href="classCDebugDumpFormatter.html">CDebugDumpFormatter</a> &ddf, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &bundle, unsigned <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> <a class="el" href="ct__nlmzip__trees_8cpp.html#a431c74c4b26732a3a7de689109eb6b65">depth</a>) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
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||
<tr class="separator:aa0101dfdc0ae0cbd0cb1609c96f96229 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#a19047c92521e5f3ad2a14bab26a49b51">DumpToConsole</a> (void) <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a></td></tr>
|
||
<tr class="separator:a19047c92521e5f3ad2a14bab26a49b51 inherit pub_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-static-methods"></a>
|
||
Static Public Member Functions</h2></td></tr>
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||
<tr class="memitem:ga93b30595f3c9a549bca2db8f7583c9b6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="blast__types_8hpp.html#a1e3e43ad38b78139db1afdfe5c72e991">TSeqAlignVector</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga93b30595f3c9a549bca2db8f7583c9b6">CSearchResultSet2TSeqAlignVector</a> (<a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCSearchResultSet.html">CSearchResultSet</a> > res)</td></tr>
|
||
<tr class="memdesc:ga93b30595f3c9a549bca2db8f7583c9b6"><td class="mdescLeft"> </td><td class="mdescRight">Converts m_Results data member to a TSeqAlignVector. <a href="group__AlgoBlast.html#ga93b30595f3c9a549bca2db8f7583c9b6">More...</a><br /></td></tr>
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||
<tr class="separator:ga93b30595f3c9a549bca2db8f7583c9b6"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_static_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCObject')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">ThrowNullPointerException</a> (void)</td></tr>
|
||
<tr class="memdesc:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define method to throw null pointer exception. <a href="group__Object.html#ga63f363685df177bedf4a7f4ed7797a07">More...</a><br /></td></tr>
|
||
<tr class="separator:ga63f363685df177bedf4a7f4ed7797a07 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__WinDLL.html#gab1bd38411cb05b5e6f85c9735a486682">NCBI_XNCBI_EXPORT</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae042a181e665dd40945c1c1a7a6bc5d1">ThrowNullPointerException</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> type_info &<a class="el" href="structtype.html">type</a>)</td></tr>
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<tr class="separator:gae042a181e665dd40945c1c1a7a6bc5d1 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga4b6f1beef2a1f37c68f7f3b1aac471d8">GetAllocFillMode</a> (void)</td></tr>
|
||
<tr class="separator:ga4b6f1beef2a1f37c68f7f3b1aac471d8 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga42eceef165a83cc081837a373ab6dd67">SetAllocFillMode</a> (<a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> <a class="el" href="mdb__load_8c.html#a1ea5d0cb93f22f7d0fdf804bd68c3326">mode</a>)</td></tr>
|
||
<tr class="separator:ga42eceef165a83cc081837a373ab6dd67 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">SetAllocFillMode</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__CGIBase.html#ga338951b7e7607b65262fb051e7804d91">string</a> &<a class="el" href="ftds14_2freetds_2tds_2config_8c.html#ac6de4458dc999b0ad86cfcbaaf37222a">value</a>)</td></tr>
|
||
<tr class="memdesc:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Set mode from configuration parameter value. <a href="group__Object.html#ga05dafbb430a19e98affa48e669d694f7">More...</a><br /></td></tr>
|
||
<tr class="separator:ga05dafbb430a19e98affa48e669d694f7 inherit pub_static_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_static_methods_classCDebugDumpable"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_classCDebugDumpable')"><img src="closed.png" alt="-"/> Static Public Member Functions inherited from <a class="el" href="classCDebugDumpable.html">CDebugDumpable</a></td></tr>
|
||
<tr class="memitem:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> void </td><td class="memItemRight" valign="bottom"><a class="el" href="classCDebugDumpable.html#ab6ba54280c562230f65733cca0560c83">EnableDebugDump</a> (<a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> on)</td></tr>
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||
<tr class="separator:ab6ba54280c562230f65733cca0560c83 inherit pub_static_methods_classCDebugDumpable"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
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||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pro-methods"></a>
|
||
Protected Member Functions</h2></td></tr>
|
||
<tr class="memitem:ga2b61811378fd6cd39fe35fc626b702d4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2b61811378fd6cd39fe35fc626b702d4">x_BuildAncillaryData</a> ()</td></tr>
|
||
<tr class="memdesc:ga2b61811378fd6cd39fe35fc626b702d4"><td class="mdescLeft"> </td><td class="mdescRight">Populate the internal m_AncillaryData member. <a href="group__AlgoBlast.html#ga2b61811378fd6cd39fe35fc626b702d4">More...</a><br /></td></tr>
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||
<tr class="separator:ga2b61811378fd6cd39fe35fc626b702d4"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pro_methods_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classCObject')"><img src="closed.png" alt="-"/> Protected Member Functions inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memItemLeft" align="right" valign="top">virtual void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">DeleteThis</a> (void)</td></tr>
|
||
<tr class="memdesc:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Virtual method "deleting" this object. <a href="group__Object.html#ga7b33b6d311860b76f3a8a79fcb7f9938">More...</a><br /></td></tr>
|
||
<tr class="separator:ga7b33b6d311860b76f3a8a79fcb7f9938 inherit pro_methods_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-methods"></a>
|
||
Private Member Functions</h2></td></tr>
|
||
<tr class="memitem:ga05599198681cc2d1c6e7c9600559e8c3"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga05599198681cc2d1c6e7c9600559e8c3">x_Init</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> &queries, <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> &subjs)</td></tr>
|
||
<tr class="memdesc:ga05599198681cc2d1c6e7c9600559e8c3"><td class="mdescLeft"> </td><td class="mdescRight">Common initialization code for all c-tors. <a href="group__AlgoBlast.html#ga05599198681cc2d1c6e7c9600559e8c3">More...</a><br /></td></tr>
|
||
<tr class="separator:ga05599198681cc2d1c6e7c9600559e8c3"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga0326ec5743fb921f033eb52147edfd61"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0326ec5743fb921f033eb52147edfd61">x_InitCLocalBlast</a> ()</td></tr>
|
||
<tr class="memdesc:ga0326ec5743fb921f033eb52147edfd61"><td class="mdescLeft"> </td><td class="mdescRight">Common initialization of the <a class="el" href="classCLocalBlast.html" title="Class to perform a BLAST search on local BLAST databases Note that PHI-BLAST can be run using this cl...">CLocalBlast</a> object. <a href="group__AlgoBlast.html#ga0326ec5743fb921f033eb52147edfd61">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0326ec5743fb921f033eb52147edfd61"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gadbeb75f2dc9f909fc3941606dc9f170f"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gadbeb75f2dc9f909fc3941606dc9f170f">CBl2Seq</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBl2Seq.html">CBl2Seq</a> &rhs)</td></tr>
|
||
<tr class="memdesc:gadbeb75f2dc9f909fc3941606dc9f170f"><td class="mdescLeft"> </td><td class="mdescRight">Prohibit copy constructor. <a href="group__AlgoBlast.html#gadbeb75f2dc9f909fc3941606dc9f170f">More...</a><br /></td></tr>
|
||
<tr class="separator:gadbeb75f2dc9f909fc3941606dc9f170f"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaddd3d184f490d01a160ccab3b36255f6"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCBl2Seq.html">CBl2Seq</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaddd3d184f490d01a160ccab3b36255f6">operator=</a> (<a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="classCBl2Seq.html">CBl2Seq</a> &rhs)</td></tr>
|
||
<tr class="memdesc:gaddd3d184f490d01a160ccab3b36255f6"><td class="mdescLeft"> </td><td class="mdescRight">Prohibit assignment operator. <a href="group__AlgoBlast.html#gaddd3d184f490d01a160ccab3b36255f6">More...</a><br /></td></tr>
|
||
<tr class="separator:gaddd3d184f490d01a160ccab3b36255f6"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga10219c03473b1fff6a846c0dec9cf6ca"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga10219c03473b1fff6a846c0dec9cf6ca">x_ResetInternalDs</a> ()</td></tr>
|
||
<tr class="memdesc:ga10219c03473b1fff6a846c0dec9cf6ca"><td class="mdescLeft"> </td><td class="mdescRight">Clean up structures and results from any previous search. <a href="group__AlgoBlast.html#ga10219c03473b1fff6a846c0dec9cf6ca">More...</a><br /></td></tr>
|
||
<tr class="separator:ga10219c03473b1fff6a846c0dec9cf6ca"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table><table class="memberdecls">
|
||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pri-attribs"></a>
|
||
Private Attributes</h2></td></tr>
|
||
<tr class="memitem:gaa6eceae7375583819b4105c0ec214b12"><td class="memItemLeft" align="right" valign="top"><a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaa6eceae7375583819b4105c0ec214b12">m_tQueries</a></td></tr>
|
||
<tr class="memdesc:gaa6eceae7375583819b4105c0ec214b12"><td class="mdescLeft"> </td><td class="mdescRight">query sequence(s) <a href="group__AlgoBlast.html#gaa6eceae7375583819b4105c0ec214b12">More...</a><br /></td></tr>
|
||
<tr class="separator:gaa6eceae7375583819b4105c0ec214b12"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaadd305360c638c5305d1357974efb85f"><td class="memItemLeft" align="right" valign="top"><a class="el" href="sseqloc_8hpp.html#a973dc27f83b37dc1df879bd86570e800">TSeqLocVector</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaadd305360c638c5305d1357974efb85f">m_tSubjects</a></td></tr>
|
||
<tr class="memdesc:gaadd305360c638c5305d1357974efb85f"><td class="mdescLeft"> </td><td class="mdescRight">sequence(s) to BLAST against <a href="group__AlgoBlast.html#gaadd305360c638c5305d1357974efb85f">More...</a><br /></td></tr>
|
||
<tr class="separator:gaadd305360c638c5305d1357974efb85f"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:ga1698700fa4e5f4118ce1968948a56f14"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCBlastOptionsHandle.html">CBlastOptionsHandle</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga1698700fa4e5f4118ce1968948a56f14">m_OptsHandle</a></td></tr>
|
||
<tr class="memdesc:ga1698700fa4e5f4118ce1968948a56f14"><td class="mdescLeft"> </td><td class="mdescRight">Blast options. <a href="group__AlgoBlast.html#ga1698700fa4e5f4118ce1968948a56f14">More...</a><br /></td></tr>
|
||
<tr class="separator:ga1698700fa4e5f4118ce1968948a56f14"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gaf04643a702cde29eb95b097d0b67292c"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCLocalBlast.html">CLocalBlast</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#gaf04643a702cde29eb95b097d0b67292c">m_Blast</a></td></tr>
|
||
<tr class="memdesc:gaf04643a702cde29eb95b097d0b67292c"><td class="mdescLeft"> </td><td class="mdescRight">The actual BLAST instance. <a href="group__AlgoBlast.html#gaf04643a702cde29eb95b097d0b67292c">More...</a><br /></td></tr>
|
||
<tr class="separator:gaf04643a702cde29eb95b097d0b67292c"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga2a8fe715887977edf81c06dc56805012"><td class="memItemLeft" align="right" valign="top"><a class="el" href="static__set_8hpp.html#af6a258d8f3ee5206d682d799316314b1">bool</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2a8fe715887977edf81c06dc56805012">m_DbScanMode</a></td></tr>
|
||
<tr class="memdesc:ga2a8fe715887977edf81c06dc56805012"><td class="mdescLeft"> </td><td class="mdescRight">Scan like a databsase (as opposed to pairwise) <a href="group__AlgoBlast.html#ga2a8fe715887977edf81c06dc56805012">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2a8fe715887977edf81c06dc56805012"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga0da7f774793232de1af3e86e4aa2402d"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classTSearchMessages.html">TSearchMessages</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0da7f774793232de1af3e86e4aa2402d">m_Messages</a></td></tr>
|
||
<tr class="memdesc:ga0da7f774793232de1af3e86e4aa2402d"><td class="mdescLeft"> </td><td class="mdescRight">Stores any warnings emitted during query setup. <a href="group__AlgoBlast.html#ga0da7f774793232de1af3e86e4aa2402d">More...</a><br /></td></tr>
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||
<tr class="separator:ga0da7f774793232de1af3e86e4aa2402d"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga2754e5dc7c52dccd1a8aec58d8646448"><td class="memItemLeft" align="right" valign="top"><a class="el" href="structBlastDiagnostics.html">BlastDiagnostics</a> * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga2754e5dc7c52dccd1a8aec58d8646448">mi_pDiagnostics</a></td></tr>
|
||
<tr class="memdesc:ga2754e5dc7c52dccd1a8aec58d8646448"><td class="mdescLeft"> </td><td class="mdescRight">Return search statistics data. <a href="group__AlgoBlast.html#ga2754e5dc7c52dccd1a8aec58d8646448">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2754e5dc7c52dccd1a8aec58d8646448"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga448282ab2d877ce013872ba3261daaf8"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__AlgoBlast.html#gade842c867ed4fb95d3621bf006e35256">CSearchResultSet::TAncillaryVector</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga448282ab2d877ce013872ba3261daaf8">m_AncillaryData</a></td></tr>
|
||
<tr class="memdesc:ga448282ab2d877ce013872ba3261daaf8"><td class="mdescLeft"> </td><td class="mdescRight">Ancillary BLAST data. <a href="group__AlgoBlast.html#ga448282ab2d877ce013872ba3261daaf8">More...</a><br /></td></tr>
|
||
<tr class="separator:ga448282ab2d877ce013872ba3261daaf8"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga8ec5c7d96d52baf95a43b36a65f41986"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCRef.html">CRef</a>< <a class="el" href="classCSearchResultSet.html">CSearchResultSet</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga8ec5c7d96d52baf95a43b36a65f41986">m_Results</a></td></tr>
|
||
<tr class="memdesc:ga8ec5c7d96d52baf95a43b36a65f41986"><td class="mdescLeft"> </td><td class="mdescRight"><a class="el" href="classCLocalBlast.html" title="Class to perform a BLAST search on local BLAST databases Note that PHI-BLAST can be run using this cl...">CLocalBlast</a> results. <a href="group__AlgoBlast.html#ga8ec5c7d96d52baf95a43b36a65f41986">More...</a><br /></td></tr>
|
||
<tr class="separator:ga8ec5c7d96d52baf95a43b36a65f41986"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga0ec18a121b14f1046c92effcacb58a06"><td class="memItemLeft" align="right" valign="top"><a class="el" href="blast__def_8h.html#a3d0d4e6f739bff33d3cd532f63fafb18">TInterruptFnPtr</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga0ec18a121b14f1046c92effcacb58a06">m_InterruptFnx</a></td></tr>
|
||
<tr class="memdesc:ga0ec18a121b14f1046c92effcacb58a06"><td class="mdescLeft"> </td><td class="mdescRight">Interrupt callback. <a href="group__AlgoBlast.html#ga0ec18a121b14f1046c92effcacb58a06">More...</a><br /></td></tr>
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<tr class="separator:ga0ec18a121b14f1046c92effcacb58a06"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga3b85f3ac0c50046e6e8c319ad2f95d37"><td class="memItemLeft" align="right" valign="top">void * </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga3b85f3ac0c50046e6e8c319ad2f95d37">m_InterruptUserData</a></td></tr>
|
||
<tr class="memdesc:ga3b85f3ac0c50046e6e8c319ad2f95d37"><td class="mdescLeft"> </td><td class="mdescRight">Interrupt user datacallback. <a href="group__AlgoBlast.html#ga3b85f3ac0c50046e6e8c319ad2f95d37">More...</a><br /></td></tr>
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||
<tr class="separator:ga3b85f3ac0c50046e6e8c319ad2f95d37"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
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||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="friends"></a>
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||
Friends</h2></td></tr>
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||
<tr class="memitem:ga5685cac1c5e8e1fac4570809b5b14d6f"><td class="memItemLeft" align="right" valign="top">class </td><td class="memItemRight" valign="bottom"><a class="el" href="group__AlgoBlast.html#ga5685cac1c5e8e1fac4570809b5b14d6f">::CBlastFilterTest</a></td></tr>
|
||
<tr class="separator:ga5685cac1c5e8e1fac4570809b5b14d6f"><td class="memSeparator" colspan="2"> </td></tr>
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||
</table><table class="memberdecls">
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||
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
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||
Additional Inherited Members</h2></td></tr>
|
||
<tr class="inherit_header pub_types_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCObject')"><img src="closed.png" alt="-"/> Public Types inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
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||
<tr class="memitem:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">enum  </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">EAllocFillMode</a> { <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca2b8c59f649cc88eeb7eaeba939e2838d">eAllocFillNone</a> = 1
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588cca336d7ff658b673c2e8fe3aed9b155f04">eAllocFillZero</a>
|
||
, <a class="el" href="group__Object.html#gga3cf5f3ac0aef32c4aab1fa66513588ccab3631bf1c36b77f950d94372290deb76">eAllocFillPattern</a>
|
||
}</td></tr>
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||
<tr class="memdesc:ga3cf5f3ac0aef32c4aab1fa66513588cc"><td class="mdescLeft"> </td><td class="mdescRight">Control filling of newly allocated memory. <a href="group__Object.html#ga3cf5f3ac0aef32c4aab1fa66513588cc">More...</a><br /></td></tr>
|
||
<tr class="separator:ga3cf5f3ac0aef32c4aab1fa66513588cc inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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<tr class="memitem:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="classCObjectCounterLocker.html">CObjectCounterLocker</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">TLockerType</a></td></tr>
|
||
<tr class="memdesc:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Default locker type for <a class="el" href="classCRef.html" title="CRef –.">CRef</a>. <a href="group__Object.html#ga2da943ea997324fcabb60e1a1ed1b71c">More...</a><br /></td></tr>
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||
<tr class="separator:ga2da943ea997324fcabb60e1a1ed1b71c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef atomic< <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> > </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">TCounter</a></td></tr>
|
||
<tr class="memdesc:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Counter type is CAtomiCounter. <a href="group__Object.html#gad6d6ac3cac6272609b70c101aaaeebf9">More...</a><br /></td></tr>
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||
<tr class="separator:gad6d6ac3cac6272609b70c101aaaeebf9 inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="group__Portability.html#gacb8f7ba15b8bac46f42c33b22099a6de">Uint8</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a></td></tr>
|
||
<tr class="memdesc:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Alias for value type of counter. <a href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">More...</a><br /></td></tr>
|
||
<tr class="separator:ga2e073b6c5b9c29648510bd99ebe00a5c inherit pub_types_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="inherit_header pub_static_attribs_classCObject"><td colspan="2" onclick="javascript:toggleInherit('pub_static_attribs_classCObject')"><img src="closed.png" alt="-"/> Static Public Attributes inherited from <a class="el" href="classCObject.html">CObject</a></td></tr>
|
||
<tr class="memitem:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">eCounterBitsCanBeDeleted</a> = 1 << 0</td></tr>
|
||
<tr class="memdesc:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Define possible object states. <a href="group__Object.html#ga6b2ef05fc91950a79ed938def4fd705d">More...</a><br /></td></tr>
|
||
<tr class="separator:ga6b2ef05fc91950a79ed938def4fd705d inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">eCounterBitsInPlainHeap</a> = 1 << 1</td></tr>
|
||
<tr class="memdesc:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Heap signature was found. <a href="group__Object.html#gae6d5b68d219dbdb40e88737873a3488c">More...</a><br /></td></tr>
|
||
<tr class="separator:gae6d5b68d219dbdb40e88737873a3488c inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">eCounterBitsPlaceMask</a></td></tr>
|
||
<tr class="memdesc:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Mask for 'in heap' state flags. <a href="group__Object.html#ga33e4da9c60adbc3cf2a0ca45ce21a2ba">More...</a><br /></td></tr>
|
||
<tr class="separator:ga33e4da9c60adbc3cf2a0ca45ce21a2ba inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__mdb__copy.html#ga10cfb7d4996b006d5675b53b9c7f0fb5">int</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">eCounterStep</a> = 1 << 2</td></tr>
|
||
<tr class="memdesc:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Skip over the "in heap" bits. <a href="group__Object.html#ga0a412d4ea79669d73671f89cb3e798a2">More...</a><br /></td></tr>
|
||
<tr class="separator:ga0a412d4ea79669d73671f89cb3e798a2 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
<tr class="memitem:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">eCounterValid</a> = <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>(1) << (sizeof(<a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a>) * 8 - 2)</td></tr>
|
||
<tr class="memdesc:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Minimal value for valid objects (reference counter is zero) Must be a single bit value. <a href="group__Object.html#gab5880debef7cc7eb2a2891f440cd7569">More...</a><br /></td></tr>
|
||
<tr class="separator:gab5880debef7cc7eb2a2891f440cd7569 inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
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||
<tr class="memitem:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memItemLeft" align="right" valign="top"><a class="el" href="Genetic__code__table_8cpp.html#aa261b98e7b0037f2a9f13cbb4b8539d7">static</a> <a class="el" href="zconf__cf_8h.html#a2c212835823e3c54a8ab6d95c652660e">const</a> <a class="el" href="group__Object.html#ga2e073b6c5b9c29648510bd99ebe00a5c">TCount</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">eCounterStateMask</a></td></tr>
|
||
<tr class="memdesc:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="mdescLeft"> </td><td class="mdescRight">Valid object, and object in heap. <a href="group__Object.html#gaff6eaaf8b9c4040a05fe2325ab75f44e">More...</a><br /></td></tr>
|
||
<tr class="separator:gaff6eaaf8b9c4040a05fe2325ab75f44e inherit pub_static_attribs_classCObject"><td class="memSeparator" colspan="2"> </td></tr>
|
||
</table>
|
||
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
|
||
<div class="textblock"><p>Runs the BLAST algorithm between 2 sequences. </p>
|
||
<dl class="section note"><dt>Note</dt><dd>this is a single-BLAST search run object (i.e.: it caches the results after a BLAST search is done). If multiple BLAST searches with different queries, subjects, or options are required, please create a separate object </dd></dl>
|
||
|
||
<p class="definition">Definition at line <a class="el" href="bl2seq_8hpp_source.html#l00057">57</a> of file <a class="el" href="bl2seq_8hpp_source.html">bl2seq.hpp</a>.</p>
|
||
</div><hr/>The documentation for this class was generated from the following files:<ul>
|
||
<li>include/algo/blast/api/<a class="el" href="bl2seq_8hpp_source.html">bl2seq.hpp</a></li>
|
||
<li>src/algo/blast/api/<a class="el" href="bl2seq_8cpp_source.html">bl2seq.cpp</a></li>
|
||
</ul>
|
||
</div><!-- contents -->
|
||
<!-- start footer part -->
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Generated by <a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.0
|
||
</small></address>
|
||
<address style="align: right;"><small>Modified on Fri Sep 20 14:57:07 2024 by modify_doxy.py rev. 669887</small></address>
|
||
</body>
|
||
</html>
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