39 lines
No EOL
1.5 KiB
HTML
39 lines
No EOL
1.5 KiB
HTML
<!DOCTYPE HTML>
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<html>
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<head>
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<title>Site-annot</title>
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<script type="text/javascript" src="/core/jquery/jquery-3.6.0.min.js">
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</script>
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<script type="text/javascript">
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jQuery.getScript("/core/alerts/alerts.js", function () { galert(['pre']) });
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</script>
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</head>
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<body>
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<h3>Site-annot</h3><pre>Defined in file <a href="scoremat.asn.html">scoremat.asn</a>
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C++ class: <a href="../doxyhtml/classCSite__annot.html">CSite_annot</a>
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Site-annot ::= SEQUENCE {
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startPosition INTEGER, -- location of the annotation,
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stopPosition INTEGER, -- start and stop position in the
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-- PSSM
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description VisibleString OPTIONAL, -- holds description or names, that
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-- can be used for labels in
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-- visualization
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type INTEGER OPTIONAL, -- type of the annotated feature,
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-- similarly to <a href="Align-annot.html">Align-annot</a> in
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-- NCBI-Cdd
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aliases SEQUENCE OF VisibleString OPTIONAL, -- additional names for
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-- the annotation
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motif VisibleString OPTIONAL, -- motif to validate mapping of sites
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motifuse INTEGER OPTIONAL -- 0 for validation
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-- 1 for motif in seqloc
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-- 2 for multiple motifs in seqloc
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}</pre>
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</body>
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