86 lines
No EOL
3.5 KiB
HTML
86 lines
No EOL
3.5 KiB
HTML
<!DOCTYPE HTML>
|
|
<html>
|
|
<head>
|
|
<title>SeqTable-column-info</title>
|
|
<script type="text/javascript" src="/core/jquery/jquery-3.6.0.min.js">
|
|
</script>
|
|
<script type="text/javascript">
|
|
jQuery.getScript("/core/alerts/alerts.js", function () { galert(['pre']) });
|
|
</script>
|
|
</head>
|
|
<body>
|
|
<h3>SeqTable-column-info</h3><pre>Defined in file <a href="seqtable.asn.html">seqtable.asn</a>
|
|
C++ class: <a href="../doxyhtml/classCSeqTable__column__info.html">CSeqTable_column_info</a>
|
|
|
|
|
|
SeqTable-column-info ::= SEQUENCE {
|
|
-- user friendly column name, can be skipped
|
|
title VisibleString OPTIONAL,
|
|
|
|
-- identification of the column data in the objects described by the table
|
|
field-id INTEGER { -- known column data types
|
|
-- position types
|
|
location (0), -- location as <a href="Seq-loc.html">Seq-loc</a>
|
|
location-id (1), -- location <a href="Seq-id.html">Seq-id</a>
|
|
location-gi (2), -- gi
|
|
location-from (3), -- interval from
|
|
location-to (4), -- interval to
|
|
location-strand (5), -- location strand
|
|
location-fuzz-from-lim (6),
|
|
location-fuzz-to-lim (7),
|
|
|
|
product (10), -- product as <a href="Seq-loc.html">Seq-loc</a>
|
|
product-id (11), -- product <a href="Seq-id.html">Seq-id</a>
|
|
product-gi (12), -- product gi
|
|
product-from (13), -- product interval from
|
|
product-to (14), -- product interval to
|
|
product-strand (15), -- product strand
|
|
product-fuzz-from-lim (16),
|
|
product-fuzz-to-lim (17),
|
|
|
|
-- main feature fields
|
|
id-local (20), -- id.local.id
|
|
xref-id-local (21), -- xref.id.local.id
|
|
partial (22),
|
|
comment (23),
|
|
title (24),
|
|
ext (25), -- field-name must be "E.xxx", see below
|
|
qual (26), -- field-name must be "Q.xxx", see below
|
|
dbxref (27), -- field-name must be "D.xxx", see below
|
|
|
|
-- various data fields
|
|
data-imp-key (30),
|
|
data-region (31),
|
|
data-cdregion-frame (32),
|
|
|
|
-- extra fields, see also special values for str below
|
|
ext-type (40),
|
|
qual-qual (41),
|
|
qual-val (42),
|
|
dbxref-db (43),
|
|
dbxref-tag (44)
|
|
} OPTIONAL,
|
|
|
|
-- any column can be identified by ASN.1 text locator string
|
|
-- with omitted object type.
|
|
-- examples:
|
|
-- "data.gene.locus" for <a href="Seq-feat.html">Seq-feat</a>.data.gene.locus
|
|
-- "data.imp.key" for <a href="Seq-feat.html">Seq-feat</a>.data.imp.key
|
|
-- "qual.qual"
|
|
-- - <a href="Seq-feat.html">Seq-feat</a>.qual is SEQUENCE so several columns are allowed
|
|
-- see also "Q.xxx" special value for shorter qual representation
|
|
-- "ext.type.str"
|
|
-- "ext.data.label.str"
|
|
-- "ext.data.data.int"
|
|
-- see also "E.xxx" special value for shorter ext representation
|
|
-- special values start with capital letter:
|
|
-- "E.xxx" - ext.data.label.str = xxx, ext.data.data = data
|
|
-- - <a href="Seq-feat.html">Seq-feat</a>.ext.data is SEQUENCE so several columns are allowed
|
|
-- "Q.xxx" - qual.qual = xxx, qual.val = data
|
|
-- - <a href="Seq-feat.html">Seq-feat</a>.qual is SEQUENCE so several columns are allowed
|
|
-- "D.xxx" - dbxref.id = xxx, dbxref.tag = data
|
|
-- - <a href="Seq-feat.html">Seq-feat</a>.dbxref is SET so several columns are allowed
|
|
field-name VisibleString OPTIONAL
|
|
}</pre>
|
|
</body>
|
|
</html> |