39 lines
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1.7 KiB
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39 lines
No EOL
1.7 KiB
HTML
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<title>PssmWithParameters</title>
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<h3>PssmWithParameters</h3><pre>Defined in file <a href="scoremat.asn.html">scoremat.asn</a>
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C++ class: <a href="../doxyhtml/classCPssmWithParameters.html">CPssmWithParameters</a>
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PssmWithParameters ::= SEQUENCE {
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-- This field is applicable to PSI-BLAST and formatrpsdb.
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-- When both the intermediate and final PSSM data are provided in this
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-- field, the final data (matrix of scores and associated statistical
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-- parameters) takes precedence and that data is used for further
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-- processing. The rationale for this is that the PSSM's scores and
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-- statistical parameters might have been calculated by other applications
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-- and it might not be possible to recreate it by using PSI-BLAST's PSSM
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-- engine.
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pssm <a href="Pssm.html">Pssm</a>,
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-- This field's rpsdbparams is used to specify the values of options
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-- for processing by formatrpsdb. If these are not set, the command
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-- line defaults of formatrpsdb are applied. This field is used
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-- by PSI-BLAST to verify that the underlying scorem matrix used to BUILD
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-- the PSSM is the same as the one being specified through the BLAST
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-- Options API. If this field is omitted, no verification will be
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-- performed, so be careful to keep track of what matrix was used to build
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-- the PSSM or else the results produced by PSI-BLAST will be unreliable.
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params <a href="PssmParameters.html">PssmParameters</a> OPTIONAL
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}</pre>
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