40 lines
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1.4 KiB
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40 lines
No EOL
1.4 KiB
HTML
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<title>PssmParameters</title>
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<h3>PssmParameters</h3><pre>Defined in file <a href="scoremat.asn.html">scoremat.asn</a>
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C++ class: <a href="../doxyhtml/classCPssmParameters.html">CPssmParameters</a>
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PssmParameters ::= SEQUENCE {
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-- pseudocount constant used for PSSM. This field corresponds to beta in
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-- equation 2 of Nucleic Acids Res. 2001 Jul 15;29(14):2994-3005.
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pseudocount INTEGER OPTIONAL,
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-- data needed by formatrpsdb to create RPS-BLAST databases. matrixName is
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-- populated by PSI-BLAST
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rpsdbparams <a href="FormatRpsDbParameters.html">FormatRpsDbParameters</a> OPTIONAL,
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-- alignment constraints needed by sequence-structure threader
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-- and other global or local block-alignment algorithms
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constraints <a href="CoreDef.html">CoreDef</a> OPTIONAL,
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-- bit score threshold for specific conserved domain hits
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bitScoreThresh REAL OPTIONAL,
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-- bit score threshold for reporting any conserved domain hits
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bitScoreReportingThresh REAL OPTIONAL,
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-- conserved functional sites with annotations
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annotatedSites <a href="Site-annot-set.html">Site-annot-set</a> OPTIONAL
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}</pre>
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