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HTML
29 lines
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1 KiB
HTML
<!DOCTYPE HTML>
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<title>Parameters</title>
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<h3>Parameters</h3><pre>Defined in file <a href="blastxml.asn.html">blastxml.asn</a>
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C++ class: <a href="../doxyhtml/classCParameters.html">CParameters</a>
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Parameters ::= SEQUENCE {
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matrix VisibleString OPTIONAL , -- <a href="Matrix.html">Matrix</a> used (-M)
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expect REAL , -- Expectation threshold (-e)
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include REAL OPTIONAL , -- Inclusion threshold (-h)
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sc-match INTEGER OPTIONAL , -- match score for NT (-r)
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sc-mismatch INTEGER OPTIONAL , -- mismatch score for NT (-q)
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gap-open INTEGER , -- Gap opening cost (-G)
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gap-extend INTEGER , -- Gap extension cost (-E)
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filter VisibleString OPTIONAL, -- Filtering options (-F)
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pattern VisibleString OPTIONAL, -- PHI-BLAST pattern
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entrez-query VisibleString OPTIONAL -- Limit of request to Entrez query
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}</pre>
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