39 lines
No EOL
1.4 KiB
HTML
39 lines
No EOL
1.4 KiB
HTML
<!DOCTYPE HTML>
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<title>Hsp</title>
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<h3>Hsp</h3><pre>Defined in file <a href="blastxml.asn.html">blastxml.asn</a>
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C++ class: <a href="../doxyhtml/classCHsp.html">CHsp</a>
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Hsp ::= SEQUENCE {
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num INTEGER , -- HSP number
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bit-score REAL , -- score (in bits) of HSP
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score REAL , -- score of HSP
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evalue REAL , -- e-value of HSP
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query-from INTEGER , -- start of HSP in query
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query-to INTEGER , -- end of HSP
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hit-from INTEGER, -- start of HSP in subject
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hit-to INTEGER , -- end of HSP in subject
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pattern-from INTEGER OPTIONAL , -- start of PHI-BLAST pattern
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pattern-to INTEGER OPTIONAL , -- end of PHI-BLAST pattern
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query-frame INTEGER OPTIONAL , -- translation frame of query
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hit-frame INTEGER OPTIONAL , -- translation frame of subject
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identity INTEGER OPTIONAL , -- number of identities in HSP
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positive INTEGER OPTIONAL , -- number of positives in HSP
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gaps INTEGER OPTIONAL , -- number of gaps in HSP
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align-len INTEGER OPTIONAL , -- length of the alignment used
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density INTEGER OPTIONAL , -- score density
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qseq VisibleString , -- alignment string for the query (with gaps)
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hseq VisibleString, -- alignment string for subject (with gaps)
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midline VisibleString OPTIONAL -- formating middle line
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}</pre>
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</body>
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