45 lines
No EOL
1.4 KiB
HTML
45 lines
No EOL
1.4 KiB
HTML
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<title>HGVS-Coordinate</title>
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<h3>HGVS-Coordinate</h3><pre>Defined in file <a href="objcoords.asn.html">objcoords.asn</a>
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C++ class: <a href="../doxyhtml/classCHGVS__Coordinate.html">CHGVS_Coordinate</a>
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HGVS-Coordinate ::= SEQUENCE {
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-- actual marker position
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-- this is supplied because this is the position of the marker in the main
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-- sequence's coordinate space; this is different than the mapped
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-- coordinate space.
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marker-pos INTEGER,
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-- pretty-printed name for the object
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-- in general, this should be the "best" seq-id for the product
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-- of a feature represented at a position
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title VisibleString,
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-- the fingerprint of the object in question
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-- this is a complex reversible hash
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object-id VisibleString OPTIONAL,
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-- the mapped position in the object's coordinate space
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-- it's not valid for DNA coordinate in UTR and intergenic region,
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-- while hgvs-position can be meaningful, that is why OPTIONAL.
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pos-mapped INTEGER OPTIONAL,
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-- a label for this position
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-- this shall always be in HGVS nomenclature
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hgvs-position VisibleString,
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-- a sequence for this position
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sequence VisibleString
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}</pre>
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