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105 lines
No EOL
3 KiB
HTML
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<h3>ExchangeSet</h3><pre>Defined in file <a href="docsum.asn.html">docsum.asn</a>
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C++ class: <a href="../doxyhtml/classCExchangeSet.html">CExchangeSet</a>
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ExchangeSet ::= SEQUENCE {
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attlist SET {
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--set-type: full dump; from query; single
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-- refSNP
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setType VisibleString OPTIONAL,
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--content depth: brief XML (only refSNP properties and summary
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-- subSNP element content); full XML (full refSNP, full subSNP content; all
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-- flanking sequences)
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setDepth VisibleString OPTIONAL,
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--version number of docsum.asn/docsum.dtd
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-- specification
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specVersion VisibleString OPTIONAL,
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dbSnpBuild INTEGER OPTIONAL, --build number of database for this export
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generated VisibleString OPTIONAL --Generated date
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},
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sourceDatabase SEQUENCE {
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attlist SET {
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--NCBI taxonomy ID for
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-- variation
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taxId INTEGER,
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--common name for species used as part of database
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-- name.
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organism VisibleString,
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dbSnpOrgAbbr VisibleString OPTIONAL, --organism abbreviation used in dbSNP.
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--organism abbreviation used within NCBI genome
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-- pipeline data dumps.
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gpipeOrgAbbr VisibleString OPTIONAL
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},
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sourceDatabase NULL
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} OPTIONAL,
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rs SEQUENCE OF <a href="Rs.html">Rs</a> OPTIONAL,
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assay <a href="Assay.html">Assay</a> OPTIONAL,
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query SEQUENCE {
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attlist SET {
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date VisibleString OPTIONAL, --yyyy-mm-dd
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--Query terms or search
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-- constraints
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string VisibleString OPTIONAL
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},
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query NULL
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} OPTIONAL,
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summary SEQUENCE {
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attlist SET {
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numRsIds INTEGER OPTIONAL, --Total number of refsnp-ids in this exchange set
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--Total length of exemplar flanking
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-- sequences
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totalSeqLength INTEGER OPTIONAL,
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--Total number of contig locations from
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-- SNPContigLoc
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numContigHits INTEGER OPTIONAL,
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--Total number of locus ids from
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-- SNPContigLocusId
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numGeneHits INTEGER OPTIONAL,
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--Total number of gi hits from
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-- MapLink
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numGiHits INTEGER OPTIONAL,
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--Total number of 3D structures from
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-- SNP3D
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num3dStructs INTEGER OPTIONAL,
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--Total number of allele frequences from
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-- SubPopAllele
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numAlleleFreqs INTEGER OPTIONAL,
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--Total number of STS hits from
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-- SnpInSts
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numStsHits INTEGER OPTIONAL,
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--Total number of unigene cluster ids from
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-- UnigeneSnp
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numUnigeneCids INTEGER OPTIONAL
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},
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summary NULL
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} OPTIONAL,
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baseURL SEQUENCE OF <a href="BaseURL.html">BaseURL</a> OPTIONAL
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}</pre>
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