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68 lines
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4.1 KiB
HTML
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<title>Cdd-descr</title>
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<h3>Cdd-descr</h3><pre>Defined in file <a href="cdd.asn.html">cdd.asn</a>
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C++ class: <a href="../doxyhtml/classCCdd__descr.html">CCdd_descr</a>
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Cdd-descr ::= CHOICE {
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othername VisibleString, -- alternative names for the CDD
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-- if domain has several common names
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category VisibleString, -- intracellular, extracellular, etc.
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-- to record spatial and/or temporal
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-- expression in free-text format
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comment VisibleString, -- this is where descriptions go
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reference <a href="Pub.html">Pub</a>, -- a citation describing the domain
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create-date <a href="Date.html">Date</a>, -- <a href="Date.html">Date</a> of first creation/dump
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tax-source <a href="Org-ref.html">Org-ref</a>, -- holds the highest common tax node
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source VisibleString, -- the database the seeds were created
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-- from, e.g. SMART, PFAM, etc..
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status INTEGER { unassigned(0),
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finished-ok(1), -- a public curated CD
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pending-release(2), -- needs work done, not yet released
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other-asis(3), -- imported as-is, immediate release
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matrix-only(4), -- CD holds a Psi-Blast PSSM only,
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-- does not contain alignment data
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update-running(5), -- has been flagged for
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-- update (in queue)
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auto-updated(6), -- update finished, no
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-- work necessary
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claimed(7), -- is earmarked for curation
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curated-complete(8),-- public curated member of a
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-- completed family
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other(255) }, -- for CD production?
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update-date <a href="Date.html">Date</a>, -- <a href="Date.html">Date</a> of last version change
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scrapbook SEQUENCE OF VisibleString, -- for storing curation notes
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-- those won't make it into public
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-- distributions
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source-id <a href="Cdd-id-set.html">Cdd-id-set</a>, -- for linking back to source db
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repeats <a href="Cdd-repeat.html">Cdd-repeat</a>, -- to record repeat counts
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old-root <a href="Cdd-id-set.html">Cdd-id-set</a>, -- to record short-term history
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curation-status INTEGER { unassigned(0), -- to record curation status
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prein (1), -- when CD is checked out from
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ofc (2), -- the tracking database, for
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iac (3), -- use within curation software
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ofv1 (4),
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iav1 (5),
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ofv2 (6),
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iav2 (7),
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postin (8),
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other (255) },
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readonly-status INTEGER { unassigned(0), -- to record read-only status
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readonly (1), -- when CD is checked out from
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readwrite (2), -- the tracking database, for
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other (255) }, -- use within curation software
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book-ref <a href="Cdd-book-ref.html">Cdd-book-ref</a>, -- links to Entrez/books
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attribution <a href="Pub.html">Pub</a>, -- add citations and/or author names
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title VisibleString -- hold short descriptive text
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}</pre>
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