42 lines
No EOL
2.2 KiB
HTML
42 lines
No EOL
2.2 KiB
HTML
<!DOCTYPE HTML>
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<title>Align-annot</title>
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<h3>Align-annot</h3><pre>Defined in file <a href="cdd.asn.html">cdd.asn</a>
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C++ class: <a href="../doxyhtml/classCAlign__annot.html">CAlign_annot</a>
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Align-annot ::= SEQUENCE {
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location <a href="Seq-loc.html">Seq-loc</a>, -- points to a location in one of the
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-- aligned sequences, usually the
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-- master/representative
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description VisibleString OPTIONAL, -- to hold descriptions/names like
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-- "Heme binding site" or "catalytic
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-- triad" etc., something that should
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-- be used for labels in visualization
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evidence SEQUENCE OF <a href="Feature-evidence.html">Feature-evidence</a> OPTIONAL, -- evidence we can
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-- compute with
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type INTEGER OPTIONAL, -- for typing annotated features
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-- 0 .. no type assigned
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-- 1 .. active site
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-- 2 .. polypeptide binding site
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-- 3 .. nucleic acid binding site
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-- 4 .. ion binding site
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-- 5 .. chemical binding site
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-- 6 .. posttranslational modification site
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-- 7 .. structural motif
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aliases SEQUENCE OF VisibleString OPTIONAL, -- adding more names for indexing
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motif VisibleString OPTIONAL, -- to validate mapping of sites
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motifuse INTEGER OPTIONAL -- 0 for validation,
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-- 1 for motif somewhere in seqloc
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-- 2 for multiple motifs in seqloc
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}</pre>
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