1032 lines
198 KiB
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1032 lines
198 KiB
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<pre>
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<B>Supplementary material for the paper
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Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members
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Lakshminarayan M. Iyer, Eugene V. Koonin, Detlef D. Leipe and L. Aravind
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Nucleic Acids Research 2005 33(12):3875-3896 </B>
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Notes: Listed below are gis, co-occuring domains, protein length, operon structures and species names and additional descriptions for members
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of the AEP superfamily. Also provided are gis of relevant members of the DNAG superfamily, the T1p09 like ATPases, the UL9 like helicases
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and the SFI-ORF24 like proteins. The operon organization and domain architectures are given for many (not all) proteins. A variety of symbols
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were used to distinguish different domains and genes and are listed below.
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Notations:
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L: DNA ligase
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@: Predicted nuclease
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Ku: Ku protein
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LS: Large subunit of the AEP primases
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MCM: MCM like AAA+ ATPases
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RT: Reverse transcriptase
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DNAB: DNAB like AAA+ ATPase
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$: Primase C-terminal domain 2; PriCT-2
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$': Primase C-terminal domain 1; PriCT-1
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+: UL9 like helicase
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~: D5N domain
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*: D5 like SFIII ATPase
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cys: Cysteine cluster found C-terminal to the AEP primase domain in NCLDV and herpesviruses
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&: Operonic neighbor of D5N+D5
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=: SFI-ORF24 like protein
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II: SFII helicase
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RecA: RecA like ATPase
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Inac: Inactive primase
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T1: Phage T1p09 like AAA ATPase
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A18R: A18R like superfamily II helicase
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|: operonic with a small protein of uncharacterized provenance
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%: N-terminal Primase like finger
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DNAG: DNAG like primase
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1. AEP clade
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^^^^^^^^^^^^^^
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# NHEJ primase family *Primase fused to a ATP dependent DNA ligase at its N-terminus ; @- predicted nuclease note solo version in 21225629
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GI fused domains length operons Species and additional descriptions
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21111054">21111054</a> L @ 1001 Ku Xanthomonas_campestris_pv._campestris_str._atcc_33913
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21229583">21229583</a> L @ 1001 Ku Xanthomonas_campestris_pv._campestris_str._atcc_33913
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48783858">48783858</a> L @ 1001 Ku Burkholderia fungorum LB400
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46324277">46324277</a> L @ 993 Ku Burkholderia cepacia R1808
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53723228">53723228</a> 1159 putative ATP-dependent DNA ligase Burkholderia pseudomallei K96243
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16119283">16119283</a> L @ 941 Ku Agrobacterium_tumefaciens_str._c58_cereon
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=39650568">39650568</a> L @ 914 Ku Rhodopseudomonas palustris CGA009
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=39936712">39936712</a> L 914 Ku Rhodopseudomonas palustris CGA009
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45518437">45518437</a> L @ 901 Ku Ralstonia eutropha JMP134
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48853691">48853691</a> L @ 896 Ku Cytophaga_hutchinsonii
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27381884">27381884</a> L @ 892 Ku Bradyrhizobium_japonicum_usda_110
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17938643">17938643</a> L @ 884 Ku Agrobacterium_tumefaciens_str._c58_u._washington
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13488470">13488470</a> L @ 883 Ku Mesorhizobium_loti
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46193563">46193563</a> L @ 875 Rhodobacter_sphaeroides
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21108669">21108669</a> L 872 Xanthomonas_axonopodis_pv._citri_str._306
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21243148">21243148</a> L @ 872 Xanthomonas_axonopodis_pv._citri_str._306
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47572438">47572438</a> L @ 867 Rubrivivax gelatinosus PM1
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46188919">46188919</a> L @ 866 Ku Pseudomonas_syringae_pv._syringae_b728a
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15966496">15966496</a> L @ 865 Sinorhizobium_meliloti
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28853873">28853873</a> L 851 Ku Pseudomonas_syringae_pv._tomato_str._dc3000
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=36958970">36958970</a> L @ 850 Ku Rhizobium_sp_ngr234
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21113450">21113450</a> L 849 Xanthomonas_campestris_pv._campestris_str._atcc_33913
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21231745">21231745</a> L @ 849 Xanthomonas_campestris_pv._campestris_str._atcc_33913
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48733014">48733014</a> L @ 848 Pseudomonas_fluorescens_pfo-1
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45915696">45915696</a> L @ 845 Ku Mesorhizobium sp. BNC1
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48849545">48849545</a> L @ 843 Ku Novosphingobium aromaticivorans DSM 12444
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9948155">9948155</a> L 840 Pseudomonas_aeruginosa_pao1
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15597334">15597334</a> L @ 840 Pseudomonas_aeruginosa_pao1
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32042242">32042242</a> L @ 840 Pseudomonas_aeruginosa_ucbpp-pa14
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13471944">13471944</a> L @ 833 Ku Mesorhizobium_loti
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=24984896">24984896</a> L 833 Ku Pseudomonas_putida_kt2440
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=26989978">26989978</a> L @ 833 Ku Pseudomonas_putida_kt2440
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13473868">13473868</a> L @ 829 Ku Mesorhizobium_loti
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46447467">46447467</a> L @ 828 Parachlamydia sp. UWE25
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33601821">33601821</a> L @ 820 Ku Bordetella bronchiseptica RB50
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16265140">16265140</a> L @ 818 Ku Sinorhizobium_meliloti
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23114519">23114519</a> L 818 Desulfitobacterium_hafniense
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46131219">46131219</a> L @ 788 Ralstonia eutropha JMP134
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29542491">29542491</a> L 781 Ku Coxiella_burnetii_rsa_493
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29655219">29655219</a> L @ 781 Ku Coxiella_burnetii_rsa_493
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17938321">17938321</a> L @ 771 Ku Agrobacterium_tumefaciens_str._c58_u._washington
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=42523710">42523710</a> L @ 740 Ku Bdellovibrio bacteriovorus HD100
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16264364">16264364</a> L 636 Sinorhizobium_meliloti
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54033199">54033199</a> 882 COG1793: ATP-dependent DNA ligase Polaromonas sp. JS666
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52006132">52006132</a> 846 COG1793: ATP-dependent DNA ligase Thiobacillus denitrificans ATCC 25259
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53686192">53686192</a> 801 COG1793: ATP-dependent DNA ligase Desulfitobacterium hafniense DCB-2
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15890358">15890358</a> 771 Hypothetical protein AGR_L_502 Agrobacterium tumefaciens str. C58
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56479238">56479238</a> 742 ATP-dependent DNA ligase Azoarcus sp. EbN1
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52079887">52079887</a> 616 ATP-dependent DNA ligase Bacillus licheniformis ATCC 14580
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56963366">56963366</a> 602 Hypothetical protein ABC1601 Bacillus clausii KSM-K16
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54022644">54022644</a> 808 Putative ATP-dependent DNA ligase Nocardia farcinica IFM 10152
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=31792127">31792127</a> 759 POSSIBLE ATP DEPENDANT DNA LIGASE (ATP DEPENDANT POLYDEOXYRIBONUCLEOTIDE SYNTHASE) (THERMOSTABLE DNA LIGASE) (ATP DEPENDANT POLYNUCLEOTIDE LIGASE) (SEALASE) (DNA REPAIR ENZYME) (DNA JOINASE) Mycobacterium bovis AF2122/97
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15614772">15614772</a> L 611 Ku Bacillus_halodurans
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16078405">16078405</a> L 611 Ku Bacillus_subtilis_subsp._subtilis_str._168
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23100489">23100489</a> L 595 Ku Oceanobacillus_iheyensis_hte831
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## 14 primase-X-ligase order different primase fused to a predicted nuclease (marked as @)and a DNA ligase
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41406978">41406978</a> @L 764 Ku Mycobacterium avium subsp. paratuberculosis str. k10
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15608078">15608078</a> @L 759 Ku Mycobacterium_tuberculosis_h37rv fused to a DNA ligase
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15840361">15840361</a> @L 759 Ku Mycobacterium_tuberculosis_cdc1551 fused to
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## 3 Primase solo mostly operonic with DNa ligase one case operonic with Reverse transcriptase
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46364634">46364634</a> 341 Kineococcus radiotolerans SRS30216 op with ATP dep. DNA ligase (46364635)
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46365537">46365537</a> 408 Kineococcus radiotolerans SRS30216
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45915588">45915588</a> 301 Mesorhizobium sp. BNC1 island
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49236469">49236469</a> 306 Moorella thermoacetica ATCC 39073 island
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49236486">49236486</a> 312 Moorella thermoacetica ATCC 39073 island
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41406438">41406438</a> 342 Mycobacterium avium subsp. paratuberculosi op with ATP dep. DNA ligase (41406439)
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41409811">41409811</a> 426 Mycobacterium avium subsp. paratuberculosi op with a NarU transporter
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=31791447">31791447</a> 397 Mycobacterium_bovis_subsp._bovis_af2122_97 in the vicinity of a NarU like transporter
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15843351">15843351</a> 346 Mycobacterium_tuberculosis_cdc1551 op with ATP dep. DNA ligase (15843352)
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||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15839650">15839650</a> 394 Mycobacterium_tuberculosis_cdc1551
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15607410">15607410</a> 397 Mycobacterium_tuberculosis_h37rv op with a NarU transporter
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||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29828238">29828238</a> 338 Streptomyces_avermitilis_ma-4680 op with ATP dep. DNA ligase (29828239)
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||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5139565">5139565</a> 341 Streptomyces_coelicolor_a3_2 op with 5139563 (ATP dependent DNA ligase)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21224801">21224801</a> 319 Streptomyces_coelicolor_a3_2 3861430
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||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21225003">21225003</a> 341 Streptomyces_coelicolor_a3_2 op with ATP dep. DNA ligase (21225001)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51892933">51892933</a> 307 Ku Symbiobacterium thermophilum IAM 14863 op with Retron Reverse Transcriptase (51892932) in the vicinity of ATP dependent DNA ligase (51892935) 51892936
|
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<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5139598">5139598</a> 293 Streptomyces_coelicolor_a3_2 operonic with Ku
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21223671">21223671</a> 293 Streptomyces_coelicolor_a3_2 operonic with Ku
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29829488">29829488</a> 293 Streptomyces_avermitilis_ma-4680 operonic with Ku
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15610866">15610866</a> 918 Hypothetical protein Rv3730c Mycobacterium tuberculosis H37Rv
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54024528">54024528</a> 346 Hypothetical protein nfa25590 Nocardia farcinica IFM 10152
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54023332">54023332</a> 333 Hypothetical protein nfa13650 Nocardia farcinica IFM 10152
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54026348">54026348</a> 320 Hypothetical protein nfa43770 Nocardia farcinica IFM 10152
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16262675">16262675</a> 330 Sinorhizobium_meliloti ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16262675">16262675</a>|ref|NP_435468.1| conserved hypothetical protein Sinorhizobium meliloti
|
||
|
||
Archaeo-eukaryotic primase family
|
||
## Eukaryotic primase subfamily
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=31215873">31215873</a> 433 Anopheles_gambiae_str._pest 55238877 408 ENSANGG00000017925_Anga_55238877 Anopheles gambiae str. PEST ENSANGP00000020414
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48098131">48098131</a> 556 Apis_mellifera
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=10177372">10177372</a> 407 Arabidopsis_thaliana
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=40744428">40744428</a> 521 Aspergillus_nidulans_fgsc_a4
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17554400">17554400</a> 410 Caenorhabditis_elegans, F58A4.4
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32452969">32452969</a> 318 Caenorhabditis_elegans 17555268 412 3B492_Ce_17555268 Caenorhabditis_elegans
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=39590788">39590788</a> 411 Caenorhabditis_briggsae
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46444047">46444047</a> 452 Candida_albicans_sc5314
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50293547">50293547</a> 410 Candida glabrata CBS138 49528498 410 CAGL0L09471g_Cgla_49528498 Candida glabrata CBS138 unnamed protein product
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=57092421">57092421</a> 723 Canis familiaris PREDICTED: similar to DNA primase small subunit (DNA primase 49 kDa subunit) (p49)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30984125">30984125</a> 416 Coprinopsis_cinerea 57207862 243 Pri1p_Ccin_57207862 Coprinopsis cinerea DNA primase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=57227461">57227461</a> 429 Cryptococcus neoformans var. neoformans JEC21 conserved hypothetical protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50258107">50258107</a> 429 Cryptococcus neoformans var. neoforman
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54655360">54655360</a> 192 Cryptosporidium hominis small subunit DNA primase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46226731">46226731</a> 402 Cryptosporidium_parvum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41393065">41393065</a> 425 Danio_rerio
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50421069">50421069</a> 440 Debaryomyces hansenii CBS767 49654746 440 DEHA0D15114g_Dhan_49654746 Debaryomyces hansenii CBS767
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54641085">54641085</a> 438 Drosophila pseudoobscura GA20108 -PA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=24660826">24660826</a> 438 Drosophila melanogaster CG7108-PA 17945575 438 DNApol-alpha50_Dm_17945575 Drosophila_melanogaster 666989 438 _Dm_666989 Drosophila_melanogaster 627159 438 _Dm_627159 Drosophila_melanogaster
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19173389">19173389</a> 298 Encephalitozoon_cuniculi ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19173389">19173389</a>|ref|NP_597192.1| DNA POLYMERASE ALPHA COMPLEX Encephalitozoon cuniculi
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56465902">56465902</a> 365 Entamoeba histolytica HM-1:IMSS DNA primase small subunit, putative
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56474331">56474331</a> 372 Entamoeba histolytica HM-1:IMSS DNA primase small subunit, putative
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56467819">56467819</a> 361 Entamoeba histolytica HM-1:IMSS DNA primase small subunit, putative
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45184841">45184841</a> 436 Eremothecium_gossypii 44980450 436 AAR018W_Agos_44980450 Eremothecium_gossypii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50803347">50803347</a> 212 Gallus_gallus ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50803347">50803347</a>|ref|XP_424273.1| PREDICTED: similar to DNA primase small subunit (DNA primase 49 kDa subunit) (p49) Gallus gallus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29246206">29246206</a> 449 Giardia_lamblia_atcc_50803, GLP_228_30110_28761 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29246206">29246206</a>|gb|EAA37812.1| GLP_228_30110_28761 Giardia lamblia ATCC 50803
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=42552113">42552113</a> 498 Gibberella_zeae_ph-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4506051">4506051</a> 420 Homo_sapiens 2353692 50 Homo_sapiens ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2353692">2353692</a>|gb|AAC51726.1| DNA primase 1 Homo sapiens
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50304201">50304201</a> 436 Kluyveromyces lactis NRRL Y-1140
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38102378">38102378</a> 507 Magnaporthe grisea 70-15
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22037275">22037275</a> 441 Moneuplotes_crassus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6679459">6679459</a> 417 Mus_musculus 110830 417 _Mmus_110830 Mus_musculus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32421129">32421129</a> 576 Neurospora_crassa
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=42601437">42601437</a> 391 Oikopleura_dioica
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47777403">47777403</a> 166 Oryza_sativa_japonica_cultivar-group ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47777403">47777403</a>|gb|AAT38037.1| unknown protein Oryza sativa (japonica cultivar-group)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55167985">55167985</a> 166 Oryza sativa (japonica cultivar-group) unknown protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55638287">55638287</a> 820 Pan troglodytes PREDICTED: similar to unactive progesterone receptor, 23 kD; likely ortholog of mouse telomerase binding protein, p23
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56511894">56511894</a> 126 /Plasmodium chabaudi small subunit DNA primase, putative \possibly separated by introns
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56524942">56524942</a> 143 \Plasmodium chabaudi hypothetical protein PC000150.02.0 /
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56486937">56486937</a> 142 Plasmodium berghei hypothetical protein PB301421.00.0
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56501173">56501173</a> 368 Plasmodium berghei small subunit DNA primase, putative
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23509588">23509588</a> 452 Plasmodium_falciparum_3d7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23481440">23481440</a> 435 Plasmodium_yoelii_yoelii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=3676248">3676248</a> 415 Rattus_norvegicus 56789492 296 Prim1_Rnor_56789492 Rattus norvegicus DNA primase, p49 subunit
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6322198">6322198</a> 409 Saccharomyces_cerevisiae 4225 409 _Sc_4225 Saccharomyces_cerevisiae
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2440193">2440193</a> 454 Schizosaccharomyces_pombe 19114677 454 SPAC6B12.10c_Sp_19114677 Schizosaccharomyces_pombe
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45708855">45708855</a> 420 Silurana_tropicalis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47182664">47182664</a> 145 Tetraodon_nigroviridis ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47182664">47182664</a>|emb|CAG14143.1| unnamed protein product Tetraodon nigroviridis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19920257">19920257</a> 394 Trypanosoma_cruzi
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46098969">46098969</a> 492 Ustilago_maydis_521
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29612475">29612475</a> 420 Xenopus_laevis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50546577">50546577</a> 441 Yarrowia lipolytica CLIB99 49646624 441 YALI0B11396g_Ylip_49646624 Yarrowia lipolytica CLIB99
|
||
|
||
## Archaeal primase subfamily --Done , Most common neighbors L44, S27, eIF2 (superoperon members)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2649873">2649873</a> 360 Archaeoglobus_fulgidus_dsm_4304
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11498348">11498348</a> 360 Archaeoglobus_fulgidus_dsm_4304
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34395917">34395917</a> 335 Archaeoglobus_fulgidus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34395815">34395815</a> 333 Thermoplasma_volcanium
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13541952">13541952</a> 332 Thermoplasma_volcanium
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16082576">16082576</a> 327 Thermoplasma_acidophilum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=10640290">10640290</a> 322 Thermoplasma_acidophilum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=18313779">18313779</a> 312 Pyrobaculum_aerophilum_str._im2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34395977">34395977</a> 391 Halobacterium_sp_nrc-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15790470">15790470</a> 424 Halobacterium_sp_nrc-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21227913">21227913</a> 414 Methanosarcina_mazei_goe1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=20906332">20906332</a> 414 Methanosarcina_mazei_goe1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=20089535">20089535</a> 414 Methanosarcina_acetivorans_c2a
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41719040">41719040</a> 390 Methanococcoides burtonii DSM 6242
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48840381">48840381</a> 414 Methanosarcina barkeri str. fusaro
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48852137">48852137</a> 374 Ferroplasma_acidarmanus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48477874">48477874</a> 370 Picrophilus torridus DSM 9790
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15897915">15897915</a> 330 Sulfolobus_solfataricus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15921179">15921179</a> 323 Sulfolobus_tokodaii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=14600710">14600710</a> 353 Aeropyrum_pernix
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47169421">47169421</a> 366 Pyrococcus_horikoshii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11360907">11360907</a> 357 Thermophilic_archaeon_bonch-osmolovskaya
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=18976482">18976482</a> 347 Pyrococcus_furiosus_dsm_3638
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=14590130">14590130</a> 346 Pyrococcus_horikoshii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=14520400">14520400</a> 345 Pyrococcus_abyssi
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2621663">2621663</a> 323 Methanothermobacter_thermautotrophicus_str._delta_h
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15678613">15678613</a> 323 Methanothermobacter_thermautotrophicus_str._delta_h
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45047194">45047194</a> 357 Methanococcus_maripaludis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45357634">45357634</a> 357 Methanococcus maripaludis S2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2128540">2128540</a> 355 Methanocaldococcus_jannaschii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15669029">15669029</a> 350 Methanocaldococcus_jannaschii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=3342819">3342819</a> 357 Thermophilic archaeon 'Bonch-Osmolovskaya'
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41615183">41615183</a> LS 393 Nanoarchaeum equitans Kin4-M fused to the large subunit ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41615183">41615183</a>|ref|NP_963681.1| NEQ395 Nanoarchaeum equitans Kin4-M
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19886998">19886998</a> 316 Methanopyrus_kandleri_av19
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34395795">34395795</a> 296 Methanopyrus_kandleri
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1522639">1522639</a> 441 Methanocaldococcus_jannaschii plasmid, operonic with MCM different from above ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1522639">1522639</a>|gb|AAC37065.1| M. jannaschii predicted coding region MJECS07 Methanococcus jannaschii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56295568">56295568</a> 400 Eukaryotic type DNA primase, small subunit uncultured archaeon
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55377204">55377204</a> 392 Eukaryotic-type DNA primase small subunit Haloarcula marismortui ATCC 43049
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=57160050">57160050</a> 346 Eukaryotic-type DNA primase, small subunit Thermococcus kodakaraensis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=14325383">14325383</a> 333 Thermoplasma volcanium GSS1 DNA primase 49 KD subunit
|
||
---Versions closer to Archaeal versions-----
|
||
# 33 fused to an MCM and large primase subunit
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29895550">29895550</a> LS MCM 1028 Bacillus_cereus_atcc_14579 Bacteriophage phBC6A51 primase fused to an MCM like AAA+ ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30020005">30020005</a> LS MCM 1028 Bacillus cereus ATCC 14579 MCM domain family protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=42524098">42524098</a> RT 1572 Bdellovibrio bacteriovorus HD100 primase fused to a reverse transcriptase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32477383">32477383</a> 322 DNAB pirellula_sp, operonic with DNAB ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32477383">32477383</a>|ref|NP_870377.1| hypothetical protein Pirellula sp.
|
||
|
||
# 2 Lef1 like primase family Baculovirus primase - Lef-1 -done
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9630822">9630822</a> 270 Bombyx_mori_nuclear_polyhedrosis_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23476523">23476523</a> 267 Rachiplusia_ou_multiple_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1170750">1170750</a> 266 Autographa_californica_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46309390">46309390</a> 253 Agrotis_segetum_granulovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11036850">11036850</a> 251 Plutella_xylostella_granulovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15213136">15213136</a> 251 Epiphyas_postvittana_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=37574038">37574038</a> 251 Choristoneura_fumiferana_def_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30387246">30387246</a> 246 Choristoneura_fumiferana_mnpv
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=8745504">8745504</a> 245 Helicoverpa_armigera_nuclear_polyhedrosis_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15426381">15426381</a> 245 Helicoverpa_armigera_nuclear_polyhedrosis_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=18028698">18028698</a> 245 Helicoverpa_zea_single_nucleocapsid_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1911259">1911259</a> 243 Orgyia_pseudotsugata_multicapsid_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=37039664">37039664</a> 242 Ecotropis_obliqua_nuclear_polyhedrosis_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6175726">6175726</a> 238 Xestia_c-nigrum_granulovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=14591829">14591829</a> 235 Cydia_pomonella_granulovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33622266">33622266</a> 235 Cryptophlebia_leucotreta_granulovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=3822358">3822358</a> 234 Lymantria_dispar_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21637047">21637047</a> 233 Phthorimaea_operculella_granulovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32526756">32526756</a> 233 Adoxophyes_orana_granulovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15553333">15553333</a> 231 Spodoptera_litura_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29567209">29567209</a> 226 Adoxophyes_honmai_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6960474">6960474</a> 216 Spodoptera_exigua_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=20043308">20043308</a> 215 Mamestra_configurata_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22476611">22476611</a> 215 Mamestra_configurata_nucleopolyhedrovirus_b
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33331746">33331746</a> 215 Mamestra_configurata_nucleopolyhedrovirus_a
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22138092">22138092</a> 159 Spodoptera_littoralis_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48843694">48843694</a> 211 Neodiprion lecontei nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48843602">48843602</a> 190 Neodiprion_sertifer_nucleopolyhedrovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15278301">15278301</a> 235 Culex_nigripalpus_baculovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=3745841">3745841</a> 270 Bombyx mori nuclear polyhedrosis virus LEF-1=AcMNPV orf14
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=57233517">57233517</a> 90 Antheraea pernyi nucleopolyhedrovirus late expression factor 1
|
||
--------------------------------------------------------------------------------------------------------------------
|
||
2. NCLDV/Herpesvirus primase clade
|
||
----
|
||
# $ fused to PriCT2, + UL9 like helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9366817">9366817</a> $ 1249 Trypanosoma_brucei
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5852135">5852135</a> $ 679 Leishmania_major
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=3063549">3063549</a> $ 633 Trypanosoma_cruzi
|
||
# 10 D5 like primase ~: D5N * : fused to a D5 ATPase, + fused to a UL9 like helicase, $, PriCT2, cys fused to the cysteine cluster
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19773719">19773719</a> ~*$ 921 Infectious_spleen_and_kidney_necrosis_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13358409">13358409</a> ~*$ 874 Lymphocystis_disease_virus_1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51870034">51870034</a> ~*$ 865 Lymphocystis disease virus - isolate China
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=37722513">37722513</a> ~*$ 975 Ambystoma tigrinum stebbensi virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49237319">49237319</a> ~*$ 973 Frog_virus_3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2738452">2738452</a> ~*$ 971 Chilo_iridescent_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9628179">9628179</a>$ ~*$ 962 African_swine_fever_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=42517401">42517401</a> ~*$ 968 Singapore grouper iridovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55819086">55819086</a> $ 582 Mimivirus (apparent neighbor of D5 ATPase)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9628155">9628155</a> + cys 1055 African_swine_fever_virus fused to a UL9 like helicase, 420401 1102 african_swine_fever_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55818889">55818889</a> + cys 1052 55818889 helicase similar to origin binding protein Mimivirus C-terminal cysteine cluster
|
||
cys 55818882 + 795 N-terminal Cys cluster Mimivirus fused to a UL9 helicase and a mimivirus specific alpha helical domain at the C
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41057504">41057504</a> cys~* 788 Bovine_papular_stomatitis_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19718057">19718057</a> cys~* 785 Camelpox_virus_cms
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=18483018">18483018</a> cys~* 785 Camelpox_virus_m-96
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=40556020">40556020</a> cys~* 794 Canarypox_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=20153103">20153103</a> cys~* 785 Cowpox_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30519484">30519484</a> cys~* 785 Cowpox_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22123840">22123840</a> cys~* 785 Ectromelia_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=61228">61228</a> cys~* 791 Fowlpox_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22595618">22595618</a> cys~* 786 Lumpy_skin_disease_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22595776">22595776</a> cys~* 786 Lumpy_skin_disease_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1492037">1492037</a> cys~* 791 Molluscum_contagiosum_virus_subtype_1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17529882">17529882</a> cys~* 785 Monkeypox_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6523935">6523935</a> cys~* 786 Myxoma_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41023349">41023349</a> cys~* 791 Fowlpox virus (isolate HP-438 Munich )
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30230665">30230665</a> cys~* 781 Orf_virus , FRAGmenT:924983 30 Orf virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41018555">41018555</a> cys~* 787 Orf_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41057131">41057131</a> cys~* 787 Orf_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6578610">6578610</a> cys~* 786 Rabbit_fibroma_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=320288">320288</a> cys~* 786 Rabbit_fibroma_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46402000">46402000</a> cys~* 785 Rabbitpox_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21492536">21492536</a> cys~* 786 Sheeppox_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=18448573">18448573</a> cys~* 786 Swinepox_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9791038">9791038</a> cys~* 785 Vaccinia_virus 12831533 Vaccinia virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2772775">2772775</a> cys~* 785 Vaccinia_virus, 938301 60 Vaccinia virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29692216">29692216</a> cys~* 785 Vaccinia_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6969760">6969760</a> cys~* 785 Vaccinia_virus_strain_tian_tan
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5830656">5830656</a> cys~* 785 Variola_minor_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2120039">2120039</a> cys~* 785 Variola_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9627616">9627616</a> cys~* 785 Variola_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=12056242">12056242</a> cys~* 786 Yaba-like_disease_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38000516">38000516</a> cys~* 786 Yaba_monkey_tumor_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4049849">4049849</a> cys~* 834 Melanoplus_sanguinipes_entomopoxvirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9964401">9964401</a> cys~* 726 Amsacta_moorei_entomopoxvirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13876693">13876693</a> cys 84 Lumpy_skin_disease_virus
|
||
|
||
# Solo primases the D5, ATPases of these viruses are fused to a D5N domain
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55819407">55819407</a> cys 470 Mimivirus, 55819085 (Mimivirus D5 has a D5N), MIMI_L537
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55819660">55819660</a> cys 364 Mimivirus hypothetical protein MIMI_L794 Mimivirus ,MIMI_L794
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38683693">38683693</a> cys 586 Feldmannia irregularis virus a
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13177327">13177327</a> cys 566 Ectocarpus_siliculosus_virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1620139">1620139</a> cys 443 A468R Paramecium bursaria Chlorella virus 1, In PBCV A456L is the D5 ATPase
|
||
|
||
# 11 D5 like Eukaryotic primase, C-terminal cysteine cluster
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22749373">22749373</a> cys 560 Homo_sapiens
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50746467">50746467</a> cys 557 Gallus_gallus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47564100">47564100</a> cys 537 Mus_musculus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34878429">34878429</a> cys 499 Rattus_norvegicus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47219988">47219988</a> cys 443 Tetraodon_nigroviridis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=26326769">26326769</a> cys 328 Mus_musculus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=10177094">10177094</a> cys 618 Arabidopsis_thaliana
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50509466">50509466</a> cys 612 Oryza_sativa_japonica_cultivar-group
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23509271">23509271</a> cys 1025 Plasmodium_falciparum_3d7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23483897">23483897</a> cys 815 Plasmodium_yoelii_yoelii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46228152">46228152</a> cys 502 Cryptosporidium_parvum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48098405">48098405</a> cys 405 Apis_mellifera
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28829960">28829960</a> cys 140 Dictyostelium_discoideum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48696728">48696728</a> + cys 1181 Ostreid herpesvirus 1 fused to a UL9 like SF II helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48696769">48696769</a> + cys 1138 Ostreid herpesvirus 1 fused to a UL9 like SF II helicase
|
||
|
||
# 12 Herpesvirus primase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48696782">48696782</a> Ostreid herpesvirus 1 ORF66
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=40787874">40787874</a> cys 1085 Bovine_herpesvirus_5 40787874 UL52 component of DNA helicase/primase complex Bovine herpesvirus 5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2653295">2653295</a> cys 1074 Bovine_herpesvirus_type_1.1 2653295 component of DNA helicase/primase complex Bovine herpesvirus type 1.1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28804689">28804689</a> cys 1058 Cercopithecine_herpesvirus_1 28804689 component of DNA helicase-primase complex Cercopithecine herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30844295">30844295</a> cys 1058 Cercopithecine_herpesvirus_1 30844295 component of helicase-primase complex Cercopithecine herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11036606">11036606</a> cys 1081 Cercopithecine_herpesvirus_7 11036606 AF275348_56 DNA helicase-primase complex component Cercopithecine herpesvirus 7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50313248">50313248</a> cys 1081 Equine_herpesvirus_1 50313248 ORF 7 Equid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9629799">9629799</a> cys 1080 Equine_herpesvirus_4 9629799 7 Equid herpesvirus 4
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4115414">4115414</a> cys 1071 Gallid_herpesvirus_1 4115414 UL52 protein Gallid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9635087">9635087</a> cys 1075 Gallid_herpesvirus_2 9635087 UL52 Gallid herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=10180758">10180758</a> cys 1074 Gallid_herpesvirus_2 10180758 AF243438_61 UL52 DNA helicase-primase-like protein associated protein Gallid herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=59552">59552</a> cys 1058 Human_herpesvirus_1 59552 UL52 Human herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1869876">1869876</a> cys 1066 Human_herpesvirus_2 1869876 UL52 Human herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9625881">9625881</a> cys 1083 Human_herpesvirus_3 9625881 primase Human herpesvirus 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11095886">11095886</a> cys 1078 Meleagrid_herpesvirus_1 11095886 AF282130_56 UL52 DNA helicase/primase complex protein Meleagrid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=993017">993017</a> cys 958 Pseudorabies_virus 993017 UL52 Suid herpesvirus 1 strain Kaplan
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51557488">51557488</a> cys 962 Pseudorabies_virus 51557488 UL52 protein; primase subunit of the heterotrimeric UL5/UL8/UL52 helicase-primase complex Suid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2338019">2338019</a> cys 837 Alcelaphine_herpesvirus_1 primase Alcelaphine herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4019283">4019283</a> cys 835 Ateline_herpesvirus_3 primase Ateline herpesvirus 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=12802583">12802583</a> cys 843 Bovine_herpesvirus_4 3 AF318573_55 DNA replication protein Bovine herpesvirus 4
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=24943142">24943142</a> cys 840 Callitrichine_herpesvirus_3 2 ORF50 Callitrichine herpesvirus 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51518033">51518033</a> cys 874 Cercopithecine_herpesvirus_15 3 BSLF1 Cercopithecine herpesvirus 15
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9628059">9628059</a> cys 884 Equine_herpesvirus_2 DNA helicase-primase complex component Equid herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9625608">9625608</a> cys 874 Human_herpesvirus_4 DNA helicase-primase complex component Human herpesvirus 4
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2246489">2246489</a> cys 843 Human_herpesvirus_8 DNA replication protein Human herpesvirus 8
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=18653862">18653862</a> cys 828 Macaca_mulatta_rhadinovirus 2 DNA replication protein Cercopithecine herpesvirus 17
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9629585">9629585</a> cys 835 Murid_herpesvirus_4 DNA replication protein Murid herpesvirus 4
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30348560">30348560</a> cys 835 Saimiriine_herpesvirus_2 0 primase Saimiriine herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6689295">6689295</a> cys 543 Saimiriine_herpesvirus_2 hypothetical protein Saimiriine herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9626011">9626011</a> cys 835 Saimiriine_herpesvirus_2 ORF 56~EDRF4~sim. to other HV Saimiriine herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1780848">1780848</a> cys 1062 Human_herpesvirus_5 HCMVUL70 Human herpesvirus 5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19881089">19881089</a> cys 984 Chimpanzee_cytomegalovirus AF480884_61 DNA helicase-primase complex protein UL70 chimpanzee cytomegalovirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=14210752">14210752</a> cys 970 Tupaia_herpesvirus T70 Tupaia herpesvirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=291528">291528</a> cys 964 Mouse_cytomegalovirus_1 helicase/primase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=31377976">31377976</a> cys 950 Rhesus_cytomegalovirus_strain_68-1 rh100 Rhesus cytomegalovirus strain 68-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27808796">27808796</a> cys 946 Human_herpesvirus_5 TPA: UL70 Human herpesvirus 5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=39842080">39842080</a> cys 946 Human_herpesvirus_5 UL70 Human herpesvirus 5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=44903282">44903282</a> cys 946 Human_herpesvirus_5 UL70 Human herpesvirus 5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9845352">9845352</a> cys 936 Rat_cytomegalovirus pR70 Murid herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51874265">51874265</a> cys 861 Human_herpesvirus_7 primase Human herpesvirus 7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=405161">405161</a> cys 860 Human_herpesvirus_6b U43 Human herpesvirus 6B
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9628345">9628345</a> cys 860 Human_herpesvirus_6 helicase /primase complex Human herpesvirus 6
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34500205">34500205</a> cys 1293 Psittacid_herpesvirus_1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6065853">6065853</a> cys 1110 Gallid_herpesvirus_1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11878253">11878253</a> cys 312 Pseudorabies_virus_ea
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11527594">11527594</a> cys 220 Marek_s_disease_herpesvirus_strain_ga
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=138079">138079</a> cys 662 Ictalurid_herpesvirus_1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1857421">1857421</a> cys 494 Gallid_herpesvirus_1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1311489">1311489</a> cys 262 Phocid_herpesvirus_2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1066182">1066182</a> cys 144 Canine_herpesvirus
|
||
|
||
3. Prim-pol clade
|
||
|
||
A. Primpol family
|
||
## Primase-polymerases, next to CopG
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1930088">1930088</a>C *~ 979 Sulfolobus_islandicus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=3059074">3059074</a> ~* 909 Acidianus_ambivalens
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1345114">1345114</a> ~* 904 Sulfolobus_islandicus, 42543570: sulfolobus_islandicus (pdb:1RNI), 42543572: sulfolobus_islandicus (pdb: 1RO2)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15921192">15921192</a> ~* 902 Sulfolobus_tokodaii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11137542">11137542</a> ~* 896 Sulfolobus_islandicus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15920509">15920509</a> ~* 862 Sulfolobus_tokodaii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=7288084">7288084</a> ~* 699 Sulfolobus_islandicus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15897097">15897097</a> 405 Sulfolobus_solfataricus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48853281">48853281</a> ~* 980 Ferroplasma_acidarmanus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48477428">48477428</a> ~* 1004 Picrophilus torridus DSM 9790, pass 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=31983840">31983840</a> 896 RepA protein Sulfolobus islandicus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56562187">56562187</a> 866 Sulfolobus neozealandicus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49188486">49188486</a> 915 Sulfolobus solfataricus
|
||
|
||
# Primase solo domain that is usually fused to D5 in other proteins and is a neighbor of D5 in these,
|
||
$': PRICT-1, &:Neighbor of D5 ATPase that is usually fused to D5N, operonic with "=" SFI-ORF24 like protein and a II: SFII helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=18266757">18266757</a> $' 292 Staphylococcus_aureus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=31616151">31616151</a> $' 290 Staphylococcus_aureus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11094389">11094389</a> $' 289 Staphylococcus_aureus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15625519">15625519</a> $' 289 & Staphylococcus_aureus neighbor of 15625518: D5 like AAA+ ATPase, (note distinct nature of AAA+)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15923780">15923780</a> 289 & Staphylococcus_aureus_subsp._aureus_mu50 neighbor of 15923781: D5 like AAA+
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15925012">15925012</a> 289 Staphylococcus_aureus_subsp._aureus_mu50
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49482607">49482607</a> $' 289 Staphylococcus aureus subsp. aureus MRSA252
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=14246559">14246559</a> $' 289 Staphylococcus aureus subsp. aureus Mu50 Hypothetical protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15927597">15927597</a> 289 Staphylococcus aureus subsp. aureus N315 Hypothetical protein SA1829
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=57284355">57284355</a> 289 Staphylococcus aureus subsp. aureus COL Pathogenicity island protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15675883">15675883</a> 285 & Streptococcus_pyogenes_m1_gas, neighbor of 15675884 D5N, D5 like AAA+ ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50915162">50915162</a> $' 285 & Streptococcus pyogenes MGAS10394, neighbor of 50915163: D5N D5 like AAA+ ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=455527">455527</a> $' 271 & Streptococcus_thermophilus_bacteriophage_sfi18, neighbor of 455527: D5 like AAA+ ATPase 455528 277 Streptococcus thermophilus bacteriophage SFi18 no primase, D5N 455528 277 Streptococcus thermophilus bacteriophage SFi18 no primase, D5N
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4530171">4530171</a> 271 &II Streptococcus_thermophilus_bacteriophage_dt1, neighbor 4530172: D5 like AAA+ ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5524054">5524054</a> $' 271 II&= Streptococcus_thermophilus_bacteriophage_sfi21, neigbor 5524055:D5 like AAA+ and D5N (trunc)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=7523555">7523555</a> $' 271 &=II Streptococcus_thermophilus_bacteriophage_sfi11 neighbor of 7523556: D5N D5 like AAA+ ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28895435">28895435</a> $' 270 II Streptococcus_pyogenes_ssi-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2444092">2444092</a> $' 269II = Streptococcus_thermophilus_temperate_bacteriophage_o1205
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9885250">9885250</a> $' 268&= II Lactococcus_bacteriophage_phi31, neighbor of 9885251: D5N D5 like AAA+ ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50591499">50591499</a> $' 268 &= Streptococcus suis 89/1591 , neighbor of 50591498: D5 like AAA+ ATPase, D5N
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28876423">28876423</a> $' 267 &=II Streptococcus_pyogenes_phage_315.5, neighbor of 28876421: D5 like AAA+ ATPase and 28876422: D5N solo, op with 28876424 =
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32481504">32481504</a> $' 236 Streptococcus_suis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28895807">28895807</a> $' 195 & II Streptococcus_pyogenes_ssi-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50590369">50590369</a> $' 259 & Streptococcus suis 8 neighbor of 50590370: D5N D5 like AAA+ ATpase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27764346">27764346</a> $' 287 Streptococcus thermophilus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19746259">19746259</a> $' 293 =II Streptococcus_pyogenes_mgas8232 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19746259">19746259</a>|ref|NP_607395.1| hypothetical phage protein Streptococcus pyogenes MGAS8232
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55822743">55822743</a> $' 286 Replication protein, phage-plasmid associated Streptococcus thermophilus CNRZ1066
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56808602">56808602</a> $' 285 Hypothetical protein SpyoM01000395 Streptococcus pyogenes M49 591
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9632451">9632451</a> $' 271 = Hypothetical protein DT1p35 Streptococcus thermophilus bacteriophage DT1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48825867">48825867</a> $' 282 Enterococcus_faecium neighbor of 48825866 (D5 like AAA+ ATPase), pass 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=971479">971479</a> $' 318 & Lactobacillus delbrueckii neighbor of 971480: D5N, D5 like AAA+ ATpase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28379720">28379720</a> $' 259 & Lactobacillus_plantarum_wcfs1, neighbor of 28379719 D5N D5 like AAA+ ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28379033">28379033</a> $' 266 Lactobacillus_plantarum_wcfs1, pass 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15672012">15672012</a> $' 264 Lactococcus_lactis_subsp._lactis , neigbor of 15672011: D5N, D5 like AAA+ ATpase, pass 4
|
||
## fused to D5 like AAA+, operonic with "=" possible origin binding protein, and a SFII helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22855035">22855035</a> ~* 806 = Bacteriophage phi-105
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48858577">48858577</a> $ 843 ** Distinct AAA+ clostridium_thermocellum_atcc_27405 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48858577">48858577</a>|ref|ZP_00312528.1| COG4983: Uncharacterized conserved protein Clostridium thermocellum ATCC 27405
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48890249">48890249</a> $ 498 Trichodesmium erythraeum IMS101
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56963140">56963140</a> Bacteriophage phi-105
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52005139">52005139</a> ~* 805 Bacillus licheniformis ATCC 14580 , 52787314 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52787314">52787314</a>|ref|YP_093143.1| hypothetical protein BLi03629 Bacillus licheniformis DSM 13
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6599326">6599326</a> ~* 770 =II Lactobacillus casei bacteriophage A2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5730280">5730280</a> ~* 771 = Lactobacillus bacteriophage phi adh
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16801649">16801649</a> ~* 757 =II Listeria innocua Clip11262 op with 16801650 (A little protein)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17402460">17402460</a> ~* 757 =II Bacteriophage PSA op with =
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15789518">15789518</a> $~ 857 Halobacterium_sp_nrc-1 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15789518">15789518</a>|ref|NP_279342.1| Vng<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=0215">0215</a>c Halobacterium sp. NRC-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15674737">15674737</a> $ 757 II Streptococcus_pyogenes_m1_gas ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15674737">15674737</a>|ref|NP_268911.1| hypothetical protein, phage associated Streptococcus pyogenes
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=20090414">20090414</a> $' 729 Methanosarcina_acetivorans_c2a ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=20090414">20090414</a>|ref|NP_616489.1| hypothetical protein (multi-domain) Methanosarcina acetivorans str. C2A
|
||
## fused to a D5 like AAA+
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50914497">50914497</a> $'~* 761 II Streptococcus pyogenes MGAS10394, op with a SWI/SNF2 like SFII helicase 50914495
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50843066">50843066</a> $'~*C 752 II Propionibacterium acnes KPA171202 , operonic with a SWI/SNF2 like SFII helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23003015">23003015</a> $' 749 lactobacillus_gasseri, 52857990 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52857990">52857990</a>|ref|ZP_00046685.2| COG3378: Predicted ATPase Lactobacillus gasseri
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52857990">52857990</a> 788 Lactobacillus gasseri
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=57233571">57233571</a> $' 757 Dehalococcoides ethenogenes 195
|
||
##
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29374967">29374967</a> 812 II Enterococcus faecalis V583, operonic with a SFII helicase 29374969
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49483702">49483702</a> 815 II Staphylococcus aureus subsp. aureus MRSA252 49483700 SWI/SNFII like SFII helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21283137">21283137</a> 815 II Staphylococcus aureus subsp. aureus MW2 , 21283134 SWI/SNFII like SF II helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49485832">49485832</a> 815 II Staphylococcus aureus subsp. aureus MSSA476, op with a SWI/SFII helicase 49485834
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28876472">28876472</a> 794 II Streptococcus pyogenes phage 315.6, 28895335: 28876470: SWI/SF II helicase putative DNA primase (phage associated) Streptococcus pyogenes SSI-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=42779465">42779465</a> 788 II Bacillus cereus ATCC 10987 , op with a SFII helicase, 42779467
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29377412">29377412</a> ~ 794 Enterococcus faecalis V583
|
||
## fused to a D5 like AAA+, or in the neighborhood ###conserved cysteine cluster -1###
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48857652">48857652</a> $' 281 Clostridium_thermocellum_atcc_27405
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48858879">48858879</a> ~*$' 717 Clostridium_thermocellum_atcc_27405
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48857599">48857599</a> $' 266 Clostridium_thermocellum_atcc_27405
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48857606">48857606</a> ~*$' 715 Clostridium_thermocellum_atcc_27405 , pass 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48857210">48857210</a> $' 240 Clostridium_thermocellum_atcc_27405 , pass 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48857378">48857378</a> ~*$' 717 Clostridium_thermocellum_atcc_27405, 48859006 94 clostridium_thermocellum_atcc_27405, pass 4 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48859006">48859006</a>|ref|ZP_00312948.1| hypothetical protein Chte02001732 Clostridium thermocellum ATCC 27405
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48860540">48860540</a> ~*C 624 = Clostridium thermocellum ATCC 27405 operonic with 48860542 (RAD52), 48860541 (DNA polymerase B subunit)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48857371">48857371</a> 225 Clostridium_thermocellum_atcc_27405 , pass 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29830757">29830757</a> $' 305 Streptomyces avermitilis_ma-4680, 29607870 29607870
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23978907">23978907</a> $' 250 Streptomyces laurentii plasmid pSLS neighbor of T1oorf9 like ATPase 23978907 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23978907">23978907</a>|dbj|BAC21270.1| hyphotheical protein Streptomyces laurentii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46198964">46198964</a> $' 293 & Thermus thermophilus HB27 operonic with D5 46198964 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46198964">46198964</a>|ref|YP_004631.1| hypothetical protein TTC0656 Thermus thermophilus HB27
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21222404">21222404</a> $' 291 Streptomyces coelicolor_a3_2, 13122165 13122165
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21223967">21223967</a> $'~ 756 Streptomyces coelicolor_a3_2 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21223967">21223967</a>|ref|NP_629746.1| putative ATP binding protein Streptomyces coelicolor A3(2)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21223001">21223001</a> 283 & Streptomyces coelicolor A3(2), 10129714 pass 4, operonic with D5 like AAA+ no $' 10129714
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29830255">29830255</a> 286 & Streptomyces avermitilis MA-4680 operonic with D5 like AAA+ 29607366, pass 4 29607366
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23014441">23014441</a> $' 286 & Magnetospirillum_magnetotacticum, operonic with 46201836 D5N, D5 like AAA+ ATPase, good starting point, pass 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56708874">56708874</a> $' RecA 603 Silicibacter pomeroyi DSS-3 hypothetical protein SPOA0086 , pass 4 fused to **DNAB/RecA**
|
||
## Inactive versions, modifications in the DxD motif ### conserved cysteine cluster, but lost $' , inac: inactive primase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29830771">29830771</a> 221 inac Streptomyces avermitilis MA-4680, 29607884 29607884
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29829195">29829195</a> 220 inac Streptomyces avermitilis MA-4680 29606301
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29830394">29830394</a> 217 inac Streptomyces avermitilis MA-4680 29607505
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29831782">29831782</a> 215 inac Streptomyces avermitilis MA-4680 29608899
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29831239">29831239</a> 233 inac Streptomyces avermitilis MA-4680 29608354
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29832465">29832465</a> 242 inac streptomyces_avermitilis_ma-4680, 29609584 29609584
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21224022">21224022</a> 152 Streptomyces coelicolor A3(2) 3413305
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21222376">21222376</a> 221 inac Streptomyces coelicolor A3(2) 15021255
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21221803">21221803</a> 233 inac Streptomyces coelicolor A3(2) 4585606
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21222788">21222788</a> 217 inac Streptomyces coelicolor A3(2), 8894748 8894748
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21221269">21221269</a> 204 Streptomyces coelicolor A3(2) 14799965
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21223937">21223937</a> 223 inac Streptomyces coelicolor A3(2) 4007740
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21220748">21220748</a> 243 inac Streptomyces_coelicolor_a3_2 6469264, pass 7 6469264
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29425605">29425605</a> 219 Mycobacteriophage_omega 29425605 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29425605">29425605</a>|gb|AAN12787.1| gp145 Mycobacteriophage Omega
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48836009">48836009</a> 202 inac Thermobifida_fusca, pass 5 48836009
|
||
## fused to D5 and PriCT-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29425808">29425808</a> ~*$' 916 Mycobacteriophage_barnyard fused to D5 and PriCT, pass 4
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29425031">29425031</a> *$' 786 Mycobacteriophage_corndog , pass 3 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29425031">29425031</a>|gb|AAN01954.1| gp22 Mycobacteriophage Corndog
|
||
## Fused to PriCT-2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=58220032">58220032</a> $ T1 815 Listonella pelagia phage phiHSIC next to RAD52 like SSB
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48696649">48696649</a> $* 762 Vibriophage VP2 Primase (1-446) fused to a D5 like AAA+ ATPase , operonic with polI and SSB pass 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48696691">48696691</a> $ 762 Vibriophage VP5 , pass 3 operonic with PolI and SSB
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=37626154">37626154</a> *$ 791 Vibrio parahaemolyticus phage VP16T, pass 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=37626216">37626216</a> *$ 791 Vibrio parahaemolyticus phage VP16C, pass 3
|
||
# SPy0671 family Primase fused to **DNAB/RecA**,
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29424972">29424972</a> $' RecA 920 II Mycobacteriophage_rosebush operonic with a SF II helicase, pass 3 fused to **DNAB/RecA**
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33334077">33334077</a> $' RecA 915 Mycobacteriophage PG1, pass 4 fused to **DNAB/RecA**
|
||
|
||
b) # E. coli Z1568-like family, some of them are fused to a A18R/RAD25 like superfamily II helicase/phage T5/ A18R (Repair)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23474120">23474120</a> A18R 799 Desulfovibrio_desulfuricans_g<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=20">20</a>
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15801056">15801056</a> A18R 794 Escherichia_coli_o157:h7_edl933
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15830559">15830559</a> A18R 786 Escherichia_coli_o157:h7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=12514445">12514445</a> 794 Escherichia coli O157:H7 AE005307_1 putative helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52548725">52548725</a> 716 uncultured archaeon GZfos18F2 DNA or RNA helicases of superfamily II
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19552783">19552783</a> A18R 783 Corynebacterium_glutamicum_atcc_13032
|
||
A18R Corynebacterium_glutamicum_atcc_13032 missing primase domain 21324339 * 543
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53714233">53714233</a> A18 970 Bacteroides fragilis YCH46 probable helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54295402">54295402</a> A18R 925 Legionella pneumophila str. Lens hypothetical protein lpl2488
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15900484">15900484</a> 276 Streptococcus_pneumoniae_tigr4, neighbor of RAD25/A18 like SFII helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15902543">15902543</a> 355 Streptococcus_pneumoniae_r6, next to transposases
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48861895">48861895</a> 175 microbulbifer_degradans_2-40 , 48861894 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48861895">48861895</a>|ref|ZP_00315794.1| COG4951: Uncharacterized protein conserved in bacteria Microbulbifer degradans 2-40
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48861894">48861894</a> 100 microbulbifer_degradans_2-40 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48861894">48861894</a>|ref|ZP_00315793.1| COG4951: Uncharacterized protein conserved in bacteria Microbulbifer degradans 2-40
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46311299">46311299</a> $* 666 Burkholderia cepacia R18194 Burkholderia Primase fused to a D5 like AAA+ ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48697236">48697236</a> ~$* 888 Burkholderia cepacia complex phage BcepC6B , check grouping ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48697236">48697236</a>|ref|YP_024966.1| putative primase/helicase protein Burkholderia cepacia complex phage BcepC6B
|
||
# 20 Primases that share a C-terminal region, best hits, primases fused to A18R/RAD25 , plasmid encoded
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23127101">23127101</a> 744 Nostoc_punctiforme, pass 7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17227422">17227422</a> 655 Nostoc_sp_pcc_7120, pass 8 pCC7120gamma plasmid, next to TraG
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17158795">17158795</a> 731 Nostoc_sp_pcc_7120 plasmid pCC7120beta, MinD , transposase ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17158795">17158795</a>|ref|NP_478306.1| ORF_ID:all7659~unknown protein Nostoc sp. PCC 7120
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53763964">53763964</a> 733 Anabaena variabilis ATCC 29413 operonic with MinD and a transposase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38505794">38505794</a> 575 Synechocystis sp. PCC 6803 plasmid encoded
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38505793">38505793</a> 530 Synechocystis sp. PCC 6803
|
||
##
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=57241810">57241810</a> 170 Campylobacter lari RM2100 conserved hypothetical protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15791770">15791770</a> 181 campylobacter_jejuni_subsp._jejuni_nctc_11168
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32267163">32267163</a> 181 helicobacter_hepaticus_atcc_51449
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34556539">34556539</a> 181 Wolinella succinogenes DSM 1740
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15611242">15611242</a> 180 helicobacter_pylori_j99
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15644813">15644813</a> 180 helicobacter_pylori_26695
|
||
|
||
|
||
c) # D. radiodurans DR0530-like family $: PriCT-2, Phages
|
||
missing Histidine, characteristic histidine downstream
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6118000">6118000</a> $* 752 Acyrthosiphon_pisum_bacteriophage_apse-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45580773">45580773</a> ~$* 854 Bordetella phage BIP-1 , pass 3 , op with methylase and cI repressor ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45580773">45580773</a>|ref|NP_996639.1| primase Bordetella phage BIP-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34304558">34304558</a> $ 719 Burkholderia cepecia phage BcepNazgul, pass 6 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34304558">34304558</a>|gb|AAQ63375.1| conserved hypothetical protein Burkholderia cepecia phage BcepNazgul
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27383370">27383370</a> 223 Bradyrhizobium japonicum USDA 110,solo primase operonic with 27383368 ~ 475 , pass 7 (D5N + AAA) Bradyrhizobium japonicum USDA 110
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48697531">48697531</a> $~* 919 Burkholderia cenocepacia phage BcepB1A riC + D5N+ D5 ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15805557">15805557</a> * 891 Deinococcus_radiodurans, 6458224 pass 5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46202140">46202140</a> *$ 1185 Magnetospirillum_magnetotacticum PriCT + D5 ATPase, pass 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54029731">54029731</a> $* Polaromonas sp. JS666 fused to D5Predicted ATPase , pass 4
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=39937604">39937604</a> $ RecA 770 Rhodopseudomonas palustris CGA009 fused to a RecA like ATPase , pass 7 39651463 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=39937604">39937604</a>|ref|NP_949880.1| hypothetical protein RPA4546 Rhodopseudomonas palustris CGA009
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48832477">48832477</a> $ T1 765 = Magnetococcus_sp_mc-1 , fused to a phage T1 like helicase in the neighborhood of a SFII helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17158691">17158691</a> $ 332 /Nostoc_sp_pcc_7120, pass 6 , in the vicinity of RepS HTH plasmid pCC7120beta
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45506180">45506180</a> $ 332 \Anabaena variabilis ATCC 29413 , possible plasmid pass 6 , neighbor of RepS HTH
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46118046">46118046</a> $ 280 Synechocystis_sp_wh_8501 , pass 5, possible plasmid
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46119288">46119288</a> $ T1 956 Synechocystis_sp_wh_8501 fused to a T1 phage ATPase, pass 5, op with a HTH
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=247792">247792</a> $+UL9 876 Synechococcus_sp_pcc_7942, plasmid pUH24 32455419 fused to a UL9 like SF II helicase pass 4
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46118335">46118335</a> $ 372 Synechocystis_sp_wh_8501 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46118335">46118335</a>|ref|ZP_00174977.2| hypothetical protein Cwat03006182 Crocosphaera watsonii WH 8501
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33865636">33865636</a> * 688 Synechococcus sp. WH 8102 fused to D5N
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33864892">33864892</a> * 656 Synechococcus_sp_wh_8102 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33864892">33864892</a>|ref|NP_896451.1| conserved hypothetical protein Synechococcus sp. WH 8102
|
||
--------------------
|
||
|
||
d) # all3500<30>like family Primase + Primase type finger + distinct T1 phage ATPase Atpase (The primase type finger is usually fused N-terminal to the DNAG like primase)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17230992">17230992</a> 1025 Anabaena sp. PCC 7120 : Run more searches (1d0q investigate)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45509658">45509658</a> 947 Anabaena variabilis ATCC 29413
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45526009">45526009</a> 1169 Crocosphaera watsonii WH 8501 COG0419: ATPase involved in DNA repair
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17132633">17132633</a> 1025 Nostoc sp. PCC 7120 all3500 , fused to D5 25382357
|
||
## 1 fused to a D5 like ATPase PriCT1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23128476">23128476</a> $'* 761 Nostoc punctiforme
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53765479">53765479</a> $'* 697 Anabaena variabilis ATCC 29413
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53763381">53763381</a> * 662 Anabaena variabilis ATCC 29413
|
||
## neighbor of **DNAB/RecA**
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33865721">33865721</a> $ 304 DNAB Synechococcus_sp_wh_8102 neighbor of 33865720 RadA/RecA like ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33866108">33866108</a> $ 204 DNAB Synechococcus_sp_wh_8102 + 33866107
|
||
## PriCT-primase-RecA like helicase : Note inversion of order of PriCT and primase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13621860">13621860</a> $ RecA 757 Streptococcus pyogenes M1 GAS hypothetical protein, phage associated
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56694890">56694890</a> $ RecA22 740 Bacillus clarkii bacteriophage BCJA1c
|
||
------------------
|
||
|
||
e) #bll5242 family
|
||
#** Phages fused to a D5 ATPase (this divergent D5 is in turn fused to a DNAG primase and polI like polymerase in 48697456)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46192876">46192876</a> ?* 895 Rhodobacter sphaeroides fused to a divergent ATPase that is most likely D5, Clp protease in the neighborhood have a domain C-terminal to the primase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27380353">27380353</a> ?* 1064 Bradyrhizobium japonicum USDA 110
|
||
48697456: <a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48697456">48697456</a>|ref|YP_024841.1| PDNAG primase + ATPase + Polymerase I is fused to the divergent ATPase and PolI
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47842852">47842852</a> * 873 Burkholderia cepacia phage Bcep43
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38638662">38638662</a> * 824 Burkholderia cenocepacia phage Bcep1 in the neighborhood of an SFII helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23752361">23752361</a> * 873 Burkholderia cepacia phage Bcep781 in the neighborhood of an SFII helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51244030">51244030</a> 305 Desulfotalea psychrophila LSv54 operonic with 51244031 D5N, not divergent D5 652
|
||
-----------------------
|
||
f) ---ColE2 like Rep family
|
||
# 37 Plasmid ColE2 like RepA primases fused to a HTH at the C-terminus, Most common neighbors ParA like MinD, TnpR Resolvase, TnpA transposase (conjugative transpostion/aided by replication)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32186821">32186821</a> $' 328 h Aeromonas salmonicida subsp. salmonicida
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32186812">32186812</a> $' 335 h Aeromonas salmonicida subsp. salmonicida
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23897240">23897240</a> $' 324 h Aeromonas salmonicida subsp. salmonicida
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23194418">23194418</a> $' 303 Bifidobacterium longum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23336702">23336702</a> 307 Bifidobacterium longum DJO10A
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1212783">1212783</a> $' 306 Bifidobacterium longum biovar Longum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1903030">1903030</a> $' 317 Brevibacterium linens
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1079742">1079742</a> $' 310 Brevibacterium linens
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9957871">9957871</a> $' 320 Brevibacterium linens
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=421594">421594</a> $' 248 Corynebacterium glutamicum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=10956613">10956613</a> 247 Corynebacterium glutamicum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=10957081">10957081</a> $' 313 Edwardsiella ictaluri
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=809495">809495</a> $' 311 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=809494">809494</a> $' 311 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=809498">809498</a> $' 308 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=809493">809493</a> $' 311 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=78571">78571</a> $' 304 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=78570">78570</a> $' 297 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=809497">809497</a> $' 304 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=809496">809496</a> $' 304 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19718322">19718322</a> $' 339 RepSalmonella enteritidis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48868970">48868970</a> $' 272 Haemophilus influenzae 86-028NP
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=42630609">42630609</a> 296 Haemophilus influenzae R2866
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4803669">4803669</a> $' 278 Halomonas elongata
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=20514398">20514398</a> 289 Klebsiella sp. KCL-2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19070667">19070667</a> $' 289 Klebsiella sp. KCL2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=37726746">37726746</a> $' 305 Moraxella catarrhalis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=58219331">58219331</a> $' 296 Vibrio cholerae O1 replicase Vibrio cholerae O1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=149985">149985</a> $' 177 Mycobacterium fortuitum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5921539">5921539</a> $' 297 Plesiomonas shigelloides
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=7635901">7635901</a> 302 Propionibacterium jensenii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11095365">11095365</a> $' 295 Rhodococcus erythropolis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=7262573">7262573</a> $' 306 Rhodococcus rhodochrous
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2460013">2460013</a> $' 310 Rhodococcus erythropolis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32128474">32128474</a> $' 296 Rhodococcus sp. B264-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19526576">19526576</a> 339 h Salmonella enteritidis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=809524">809524</a> $' 308 Shigella sonnei
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=809525">809525</a> $' 308 Shigella sonnei
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=809523">809523</a> $' 296 Shigella sonnei
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4138626">4138626</a> $' 341 h Thiobacillus sp.
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32455922">32455922</a> $' 491 Micrococcus sp. 28 C-terminal low complexity
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28856040">28856040</a> $' 457 Pseudomonas syringae pv. tomato str. DC3000 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28856040">28856040</a>|gb|AAO59096.1| RepA protein, putative Pseudomonas syringae pv. tomato str. DC3000
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2664218">2664218</a> $' 437 Pseudomonas syringae ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2664218">2664218</a>|emb|CAA10908.1| Replication protein Pseudomonas syringae
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4456753">4456753</a> $' 437 Pseudomonas syringae pv. tomato ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4456753">4456753</a>|emb|CAB37316.1| RepA Pseudomonas syringae pv. tomato
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13926125">13926125</a> $' 437 Pseudomonas syringae pv. maculicola ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13926125">13926125</a>|gb|AAK49536.1|AF359557_1 replicase Pseudomonas syringae pv. maculicola
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28855972">28855972</a> $' 437 Pseudomonas syringae pv. tomato str. DC3000 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28855972">28855972</a>|gb|AAO59029.1| replication protein RepA Pseudomonas syringae pv. tomato str. DC3000
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38257033">38257033</a> $' 437 Pseudomonas syringae pv. syringae ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38257033">38257033</a>|ref|NP_940687.1| major replication protein Pseudomonas syringae pv. syringae
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49188521">49188521</a> 436 Pseudomonas syringae pv. maculicola ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49188521">49188521</a>|ref|YP_025619.1| replication protein Pseudomonas syringae pv. maculicola
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49188572">49188572</a> 433 Pseudomonas syringae pv. maculicola ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=49188572">49188572</a>|ref|YP_025669.1| replication protein Pseudomonas syringae pv. maculicola
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21264244">21264244</a> $' 406 Xanthomonas axonopodis pv. citri str. 306 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21264244">21264244</a>|ref|NP_644744.1| replication protein A Xanthomonas axonopodis pv. citri str. 306
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27358692">27358692</a> $' 392 Vibrio vulnificus CMCP6 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27358692">27358692</a>|gb|AAO07641.1|AE016810_144 Conserved hypothetical protein Vibrio vulnificus CMCP6
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=557211">557211</a> $' 320 Thiobacillus intermedius K12 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=557211">557211</a>|gb|AAC12677.1| putative replication protein Thiobacillus intermedius K12
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578552">56578552</a> $' 437 Pseudomonas syringae pv. aesculi RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578554">56578554</a> $' 437 Pseudomonas syringae pv. aesculi RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578556">56578556</a> $' 437 Pseudomonas savastanoi RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578558">56578558</a> $' 437 Pseudomonas savastanoi RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578560">56578560</a> $' 437 Pseudomonas savastanoi RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578562">56578562</a> $' 437 Pseudomonas savastanoi RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578564">56578564</a> $' 437 Pseudomonas syringae pv. maculicola RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578566">56578566</a> $' 437 Pseudomonas savastanoi RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578568">56578568</a> $' 437 Pseudomonas syringae pv. maculicola RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578570">56578570</a> $' 437 Pseudomonas syringae pv. maculicola RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578572">56578572</a> $' 437 Pseudomonas syringae pv. tabaci RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578574">56578574</a> $' 437 Pseudomonas syringae pv. syringae RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578576">56578576</a> $' 437 Pseudomonas syringae pv. syringae RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578578">56578578</a> $' 437 Pseudomonas syringae pv. tomato RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56578580">56578580</a> $' 437 Pseudomonas syringae pv. syringae RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55275347">55275347</a> $' 398 replicase uncultured bacterium
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27367124">27367124</a> $' 392 Vibrio vulnificus CMCP6 hypothetical protein VV20706
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51492514">51492514</a> 459 Aeromonas punctata putative replication protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23494823">23494823</a> 547 Corynebacterium efficiens conserved hypothetical protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27657780">27657780</a> 542 Corynebacterium glutamicum RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=14141962">14141962</a> 524 Corynebacterium jeikeium RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32455772">32455772</a> 524 Corynebacterium jeikeium RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15278131">15278131</a> 521 Corynebacterium jeikeium AF401314_1 RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30349475">30349475</a> 521 Corynebacterium jeikeium RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19482140">19482140</a> 519 Corynebacterium jeikeium RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19848305">19848305</a> 516 Corynebacterium jeikeium RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30349353">30349353</a> 516 Corynebacterium jeikeium RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9945803">9945803</a> 514 Corynebacterium striatum RepB
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=20502470">20502470</a> 492 Corynebacterium efficiens replication initiation protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17059601">17059601</a> 489 Corynebacterium glutamicum RepA protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54400285">54400285</a> 486 Corynebacterium glutamicum Rep protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6705943">6705943</a> 485 Corynebacterium glutamicum REP
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23577983">23577983</a> 485 Corynebacterium efficiens hypothetical protein CE2P013
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23577975">23577975</a> 484 Corynebacterium efficiens hypothetical protein CE2P005
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4583394">4583394</a> 482 Corynebacterium glutamicum AF121000_5 replicase RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9836711">9836711</a> 479 Corynebacterium glutamicum AF164956_7 replicase RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4958941">4958941</a> 464 Corynebacterium glutamicum replication protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=580988">580988</a> 332 Corynebacterium glutamicum Rep
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=37993852">37993852</a> 296 Arcanobacterium pyogenes RepA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=44003918">44003918</a> $' 302 Propionibacterium jensenii putative theta replicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53690296">53690296</a> $' 293 Bifidobacterium longum DJO10A hypothetical protein Blon03001888
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55978436">55978436</a> $' 387 Thermus thermophilus HB8 putative RepA protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45368403">45368403</a> *$' 417 Thermus thermophilus fused to a HTH
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55378248">55378248</a> Haloarcula marismortui ATCC 43049
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11036629">11036629</a> $' 303 Propionibacterium freudenreichii
|
||
|
||
-----------------
|
||
g) # RepE/RepS family fusea to a wHTH most common neighbors: ParA, transposases, occasionally TopoI
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=18450352">18450352</a> 549 pA > Listeria innocua <a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=18450352">18450352</a>|ref|NP_569223.1| pli0070 Listeria innocua
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47093912">47093912</a> $' 549 pA Listeria monocytogenes str. 4b H7858 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47093912">47093912</a>|ref|ZP_00231652.1| plasmid replication protein Listeria monocytogenes str. 4b H7858
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4884028">4884028</a> $' 513 pA Bacillus thuringiensis ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4884028">4884028</a>|emb|CAB43191.1| replication protein Rep63A Bacillus thuringiensis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6470189">6470189</a> $' 512 pA Bacillus anthracis ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6470189">6470189</a>|gb|AAF13643.1|AF188935_41 pXO2-38 Bacillus anthracis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29377894">29377894</a> $' 501 pA Enterococcus faecalis V583 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29377894">29377894</a>|ref|NP_817021.1| repS protein, putative Enterococcus faecalis V583
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48826595">48826595</a> $' 499 Enterococcus faecium ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48826595">48826595</a>|ref|ZP_00287783.1| hypothetical protein Efae03000059 Enterococcus faecium
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=25011064">25011064</a> $' 497 Streptococcus agalactiae NEM316 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=25011064">25011064</a>|ref|NP_735459.1| Unknown Streptococcus agalactiae NEM316
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48825803">48825803</a> $' 497 pA Enterococcus faecium ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48825803">48825803</a>|ref|ZP_00287041.1| hypothetical protein Efae03000933 Enterococcus faecium
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=12956991">12956991</a> $' 496 Enterococcus faecalis ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=12956991">12956991</a>|emb|CAC29162.1| putative RepS protein Enterococcus faecalis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29377853">29377853</a> $' 496 Enterococcus faecalis V583 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29377853">29377853</a>|ref|NP_816981.1| repE protein Enterococcus faecalis V583
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34558753">34558753</a> $' 496 Shuttle vector pMSP3535-RT ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34558753">34558753</a>|gb|AAQ75109.1| RepE Shuttle vector pMSP3535-RT
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38707197">38707197</a> $' 496 pA Streptococcus pyogenes ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38707197">38707197</a>|gb|AAR27207.1| RepS Streptococcus pyogenes
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17227197">17227197</a> $' 524 pA Staphylococcus aureus Staphylococcus aureus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2127285">2127285</a> $' 510 Bacillus thuringiensis Bacillus thuringiensis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56899916">56899916</a> $' 518 pA Bacillus thuringiensis serovar konkukian str. 97-27 replication protein Bacillus thuringiensis serovar konkukian str. 97-27
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=10956428">10956428</a> $' 512 pA Bacillus anthracis pxo2-38 Bacillus anthracis
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16415853">16415853</a> $' 549 Listeria innocua Listeria innocua pli0070 Listeria innocua
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6690327">6690327</a> 151 Staphylococcus aureus incomplete AF117258_1 replication protein RepE Staphylococcus aureus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48696458">48696458</a> 537 Staphylococcus phage K putative Rep protein Staphylococcus phage K
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=809763">809763</a> 61 Streptococcus pyogenes fragment protein Rep(19035) Streptococcus pyogenes
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=12383034">12383034</a> 481 Treponema denticola Rep Treponema denticola
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34328038">34328038</a> 453 Staphylococcus sciuri putative replication protein Staphylococcus sciuri
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51209437">51209437</a> 382 Campylobacter coli repa Campylobacter coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=57505192">57505192</a> 343 Campylobacter coli RM2228 replication protein Campylobacter coli RM2228
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=152676">152676</a> 303 Selenomonas ruminantium ORF A
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=321984">321984</a> 303 Selenomonas ruminantium JQ1751 hypothetical 35.5K protein - Selenomonas ruminantium plasmid pJDB23
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28208757">28208757</a> 462 Clostridium tetani AF528097_45 putative replication protein Clostridium tetani
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28208716">28208716</a> 461 Clostridium tetani AF528097_1 putative replication protein Clostridium tetani
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56410441">56410441</a> 439 Geobacillus kaustophilus HTA426 replication protein Geobacillus kaustophilus HTA426
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=14278873">14278873</a> 432 Bacillus sp. KSM-KP43 replication protein Bacillus sp. KSM-KP43
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48859983">48859983</a> 464 Clostridium thermocellum ATCC 27405 COG1961: Site-specific recombinases, DNA invertase Pin homologs Clostridium thermocellum ATCC 27405
|
||
--------------------------------
|
||
|
||
# BT4734 family *fused to a D5 like ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53714955">53714955</a> $' 719 inactive Bacteroides fragilis YCH46 53714955 Probably hypothetical protein BF3670 Bacteroides fragilis YCH46
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53715570">53715570</a> 667 inactive Bacteroides fragilis YCH46 53715570 Probably putative helicase Bacteroides fragilis YCH46
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29340700">29340700</a> 696 inactive Bacteroides thetaiotaomicron VPI-5482 29348794 Probably hypothetical protein BT3385 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29340087">29340087</a> 702 inactive Bacteroides thetaiotaomicron VPI-5482 29348184 Probably putative helicase Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29341829">29341829</a> 651 inactive Bacteroides thetaiotaomicron VPI-5482 29349918 Probably putative helicase Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29341610">29341610</a> 697 inactive Bacteroides thetaiotaomicron VPI-5482 29349700 Probably hypothetical protein BT4292 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29341480">29341480</a> 692 inactive Bacteroides thetaiotaomicron VPI-5482 29349570 Probably hypothetical protein BT4162 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29342054">29342054</a> 688 Bacteroides thetaiotaomicron VPI-5482 29350142 hypothetical protein BT4734 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=60494363">60494363</a> 719 Bacteroides fragilis NCTC 9343 conserved hypothetical protein Bacteroides fragilis NCTC 9343
|
||
Fused to or in the vicinity of a a T1-phage like ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=60493694">60493694</a> 791 Bacteroides fragilis NCTC 9343 conserved hypothetical protein Bacteroides fragilis NCTC 9343
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53714065">53714065</a> $' 767 Bacteroides fragilis YCH46 53714065 hypothetical protein BF2773 Bacteroides fragilis YCH46
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29339297">29339297</a> 811 Bacteroides thetaiotaomicron VPI-5482 29347397 hypothetical protein BT1987 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29339010">29339010</a> 208 Bacteroides thetaiotaomicron VPI-5482 29347112 hypothetical protein BT1702 Bacteroides thetaiotaomicron VPI-5482 29339011: $: vicinity of T1 ATPase and PriCT-2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29338945">29338945</a> 208 Bacteroides thetaiotaomicron VPI-5482 29347047 hypothetical protein BT1637 Bacteroides thetaiotaomicron VPI-5482 29338946 $: vicinity of T1- ATPase fused to PriCT-2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29338013">29338013</a> $' 791 Bacteroides thetaiotaomicron VPI-5482 29346119 hypothetical protein BT0709 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29337707">29337707</a> $' 775 Bacteroides thetaiotaomicron VPI-5482 29345814 hypothetical protein BT0404 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29341939">29341939</a> 199 Bacteroides thetaiotaomicron VPI-5482 29350027 hypothetical protein BT4619 Bacteroides thetaiotaomicron VPI-5482 29341940: vicinity of T1-ATPase
|
||
------------------------------ No primase 29345692 431 Probably inactive hypothetical protein BT0282 Bacteroides thetaiotaomicron VPI-5482
|
||
|
||
#1 ~ fused to D5N and AAA+ closely related to versions that do not have Primase such as 21234191
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4336104">4336104</a> ~ 867 Mycobacteriophage TM4
|
||
|
||
#Tail
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38423817">38423817</a> 530 Synechocystis_sp_pcc_6803 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38423817">38423817</a>|dbj|BAD02026.1| sll8018 Synechocystis sp. PCC 6803
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15922049">15922049</a> 430 Sulfolobus_tokodaii ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15922049">15922049</a>|ref|NP_377718.1| 430aa long hypothetical protein Sulfolobus tokodaii
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2648218">2648218</a> 280 Archaeoglobus_fulgidus_dsm_4304 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2648218">2648218</a>|gb|AAB88954.1| conserved hypothetical protein Archaeoglobus fulgidus DSM 4304
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13310498">13310498</a> 105 Shigella_flexneri ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13310498">13310498</a>|gb|AAK18322.1|AF348706_11 orf, hypothetical Shigella flexneri
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27657769">27657769</a> 622 Corynebacterium_glutamicum, pass 3 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27657769">27657769</a>|gb|AAO18199.1| hypothetical protein Corynebacterium glutamicum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16120092">16120092</a> 294 Halobacterium_sp_nrc-1 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16120092">16120092</a>|ref|NP_395680.1| Vng<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6142">6142</a>c Halobacterium sp. NRC-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23012376">23012376</a> 543 Magnetospirillum_magnetotacticum, pass 7 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23012376">23012376</a>|ref|ZP_00052477.1| hypothetical protein Magnetospirillum magnetotacticum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48788632">48788632</a> 412 Burkholderia fungorum LB400 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48788632">48788632</a>|ref|ZP_00284611.1| COG2141: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases Burkholderia fungorum LB400
|
||
#Singletons
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21282480">21282480</a> ~ 790 Staphylococcus aureus subsp. aureus MW2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13470708">13470708</a> * 780 Mesorhizobium loti MAFF303099 (Does not have D5N)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48853306">48853306</a> 324 Ferroplasma acidarmanus , pass 7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13541532">13541532</a> 180 Thermoplasma volcanium GSS1 neighbor of 13541531 (solo D5N) , pass 7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2642194">2642194</a> 157 Pseudomonas sp. PyR19 neighbor of 2642195 $ PriCT 239 Pseudomonas sp. PyR19 unknown protein Pseudomonas sp. PyR19
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46916864">46916864</a> 125 Photobacterium profundum
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29830764">29830764</a> 118 Streptomyces avermitilis MA-4680 , 29607877
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=41057063">41057063</a> 545 Clostridium difficile Divergent RepA essential for plasmid replication.
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30043995">30043995</a> 461 Bacteriophage RM 378 Divergent primase hypothetical protein Rm378p005
|
||
#tail
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38423818">38423818</a> $ 575 Synechocystis_sp_pcc_6803 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38423818">38423818</a>|dbj|BAD02027.1| sll8019 Synechocystis sp. PCC 6803
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33603114">33603114</a> $ 700 Bordetella bronchiseptica ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33603114">33603114</a>|ref|NP_890674.1| phage-related hypothetical protein Bordetella bronchiseptica
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=25028716">25028716</a> $' 293 Corynebacterium_efficiens_ys-314 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=25028716">25028716</a>|ref|NP_738770.1| conserved hypothetical protein Corynebacterium efficiens YS-314
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23015921">23015921</a> $'~ 796 Magnetospirillum magnetotacticum divergent the D5 ATPase is close in sequence to the P4 Primase ATPase
|
||
# 22 **fused to a GntR like wHTH (solo in 46205616) ,
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=25169161">25169161</a> 653 Arthrobacter_nicotinovorans plasmid="pAO1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=42558833">42558833</a> 623 Arthrobacter_aurescens, plasmid="pAA1, 42558835: MinD
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=54027812">54027812</a> 622 Nocardia farcinica IFM 10152, plasmid pNF2, neighbor of 54027811: MinD ATPase
|
||
|
||
|
||
Proteins that do not contain the AEP primase but of interest
|
||
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
|
||
#
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45527516">45527516</a> 268 Crocosphaera watsonii WH 8501 53735978 solo D5N
|
||
Solo PriCT
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48857332">48857332</a> $' 102 Clostridium_thermocellum_atcc_27405 solo PriCT ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48857332">48857332</a>|ref|ZP_00311348.1| hypothetical protein Chte02003491 Clostridium thermocellum ATCC 27405
|
||
-------------------------
|
||
# 15 $: DNAG like primase Fused to PriCT + D5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48781924">48781924</a> $ 644 Burkholderia fungorum LB400
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48787622">48787622</a> $ 621 Burkholderia fungorum LB400
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48781315">48781315</a> $ 620 Burkholderia fungorum LB400
|
||
|
||
#
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46578606">46578606</a> ~ 561 Desulfovibrio vulgaris subsp. vulgaris str
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46581285">46581285</a> ~ 561 Desulfovibrio vulgaris subsp. vulgaris str
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51245423">51245423</a> ~* 593 primase domain Desulfotalea psychrophila LSv54
|
||
## 8 DNAG like Primase fused to a D5 like ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22997884">22997884</a> ~* 849 Xylella fastidiosa Ann-1, 52856540 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52856540">52856540</a>|ref|ZP_00042163.2| COG3378: Predicted ATPase Xylella fastidiosa Ann-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22997962">22997962</a> ~* 848 Xylella fastidiosa Ann-1 52856579 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52856579">52856579</a>|ref|ZP_00042097.2| COG3378: Predicted ATPase Xylella fastidiosa Ann-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22994076">22994076</a> ~* 847 Xylella fastidiosa Dixon, 53800954 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53800954">53800954</a>|ref|ZP_00038597.2| COG3378: Predicted ATPase Xylella fastidiosa Dixon
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22996303">22996303</a> ~* 847 Xylella fastidiosa Ann-1 52857421 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52857421">52857421</a>|ref|ZP_00040564.2| COG3378: Predicted ATPase Xylella fastidiosa Ann-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15837307">15837307</a> ~* 845 Xylella fastidiosa 9a5c
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15839095">15839095</a> ~* 819 Xylella fastidiosa 9a5c
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28199007">28199007</a> ~* 819 Xylella fastidiosa Temecula1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22993619">22993619</a> 585 Xylella fastidiosa Dixon, 53801199 - no ATPase ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53801199">53801199</a>|ref|ZP_00038186.2| COG3378: Predicted ATPase Xylella fastidiosa Dixon
|
||
--------------------
|
||
|
||
D5N solos or in non-primase contexts
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=13541531">13541531</a> 117 Thermoplasma volcanium
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28876422">28876422</a> 184 = D5N solo neighbor of D5 and Primase op with = Streptococcus pyogenes phage 315.5 , 28895808 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28895808">28895808</a>|ref|NP_802158.1| putative primase Streptococcus pyogenes SSI-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53688781">53688781</a> 715 Nostoc punctiforme PCC 73102
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55819085">55819085</a> 391 D5N + AAA ATPase helicase III/ VV D5-type ATPase (C-term) Mimivirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55822742">55822742</a> 500 D5N + AAA ATPase phage associated Streptococcus thermophilus CNRZ1066
|
||
#1 DNAG +D5N (other members of the N-terminal domain fused to UL9 like helicase: eg see Unknown DNAG-Ul9 46134466)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45526817">45526817</a> ~ 912 Unknown N-terminal domain + DNAG + D5N+ D5 ATPase + unknown C Crocosphaera watsonii WH 8501, fused to D5 53735500 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53735500">53735500</a>|ref|ZP_00178019.2| COG3378: Predicted ATPase Crocosphaera watsonii WH 8501
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46119657">46119657</a> ~ 514 DNAG + D5N Crocosphaera watsonii WH 8501
|
||
|
||
|
||
# 3 D5N, AAA No primase at N,
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=26247364">26247364</a> ~ 584 Escherichia coli CFT073
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30062663">30062663</a> ~ 582 Shigella flexneri 2a str. 2457T
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=24112536">24112536</a> ~ 535 Shigella flexneri 2a str. 301
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6739647">6739647</a> ~ 589 Haemophilus influenzae
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23467851">23467851</a> ~ 636 Haemophilus somnus 129PT
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15830836">15830836</a> 321 Escherichia coli O157:H7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=14531026">14531026</a> 96 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16421291">16421291</a> 689 Salmonella typhimurium LT2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15603647">15603647</a> 725 Pasteurella multocida subsp. multocida str. Pm70
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53728330">53728330</a> 729 Haemophilus somnus 2336
|
||
# 13 D5N- AAA+, No primase, | operonic with a small protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=24575142">24575142</a> ~* 511 | Streptomyces globisporus op with 24575141
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=24575081">24575081</a> ~* 509 | Streptomyces globisporus op with 24575080
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21234191">21234191</a> ~* 506 | Streptomyces coelicolor A3(2) op with 21234192
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30698439">30698439</a> ~* 485 | Streptomyces rochei op with 24575138 op with 30698438
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27383368">27383368</a> ~* 475 | Bradyrhizobium japonicum USDA 110, operonic with 27383370 (solo primase) 223 Bradyrhizobium japonicum USDA 110
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=24575137">24575137</a> ~* 474 | Streptomyces globisporus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15843066">15843066</a> ~* 472 Mycobacterium tuberculosis CDC1551
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=15608720">15608720</a> ~* 471 Mycobacterium tuberculosis H37Rv
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30698434">30698434</a> ~* 471 | Streptomyces rochei op with 30698432
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=31792768">31792768</a> ~* 471 Mycobacterium bovis AF212
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46192392">46192392</a> ~* 429 Rhodobacter sphaeroides
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6960323">6960323</a> * 426 Streptomyces coelicolor A3(2)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46323887">46323887</a> ~* 365 Burkholderia cepacia R1808
|
||
#
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53803176">53803176</a> 755 ~ $$$$$ fused to a DNAG like primase prophage LambdaMc01, DNA primase, P4 family Methylococcus capsulatus str. Bath , D5N, AAA+
|
||
|
||
#1 no primase domain
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21226253">21226253</a> ~ 628 Methanosarcina mazei Go1
|
||
|
||
|
||
------------DNAG like primases in similar contexts------------
|
||
|
||
# 3 ~: DNAG like primase + D5N region
|
||
25532010 ~*! 1097 Nostoc sp. !! C-term domain shared with ( Nostoc, similar configuration with a DNAG primase) and 17232888 (solo) 17227468 ><a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17227468">17227468</a>|ref|NP_478650.1| ORF_ID:all9003~unknown protein Nostoc sp. PCC 7120
|
||
23129343 ~* 1019 Nostoc punctiforme
|
||
23129742 ~* 1002 Nostoc punctiforme
|
||
17232892 ~*! 836 Anabaena sp. PCC 7120
|
||
|
||
# 1 PriCT-DNAG-D5 or distinct AAA+
|
||
46321344 $ 953 Burkholderia cepacia R1808
|
||
|
||
|
||
# DNAG primase + D5 specific region + D5N + AAA+ ATPase, %: Primase type finger at N-terminus
|
||
29243104 %~* 808 Bacteriophage phi-BT1 (1-67 finger) run searches with this fellow to find more like him
|
||
40313246 %~* 805 Bacteriophage phi-C31
|
||
432620 ~* 519 Bacteriophage phi-C31
|
||
46580593 %~* 830 Desulfovibrio vulgaris subsp. vulgaris str
|
||
23129552 * 733 Nostoc punctiforme
|
||
51597435 %~* 763 Yersinia pseudotuberculosis IP 32953
|
||
15799978 %~ 796 Escherichia coli O157:H7 EDL933
|
||
15829557 %~* 777 Escherichia coli O157:H7
|
||
45443313 %~* 763 Yersinia pestis biovar Medievalis str. 91001
|
||
22127140 ~* 697 Yersinia pestis KIM
|
||
29143025 %~* 777 Salmonella enterica subsp. enterica serova
|
||
93819 %~* 777 Bacteriophage phi-R73
|
||
17545558 ~* 765 Ralstonia solanacearum GMI1000
|
||
9627512 %~* 777 Bacteriophage P4 fused to D5N
|
||
16763293 %~* 777 Salmonella enterica subsp. enterica serova
|
||
17547948 ~* 759 Ralstonia solanacearum GMI1000
|
||
50121678 %~* 868 Erwinia caratovora
|
||
|
||
|
||
DNAG primase fused to a UL9 like helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=42718151">42718151</a> 1239 putative replication protein RepA Bacteriophage VP882
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33770544">33770544</a> 1330 relication protein RepA Bacteriophage PY54
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46402121">46402121</a> 1328 Gp35 Bacteriophage phiKO2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=3192713">3192713</a> 1324 gp37 Bacteriophage N15
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2529380">2529380</a> 1228 primase Bacteriophage N15
|
||
|
||
------------------------SFI-ORF24, RAD52-like origin binding protein------------------
|
||
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16801650">16801650</a> 160 Listeria innocua Clip11262
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17402459">17402459</a> 161 Bacteriophage PSA
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2444091">2444091</a> 151 Streptococcus thermophilus temperat
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9632450">9632450</a> 151 Streptococcus thermophilus bacteriophage DT1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5524019">5524019</a> 151 Streptococcus thermophilus bacteriophage Sfi19
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5524053">5524053</a> 151 Streptococcus thermophilus bacteriophage Sfi21
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=7523554">7523554</a> 151 Streptococcus thermophilus bacteriophage Sfi11
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9885249">9885249</a> 150 Lactococcus bacteriophage phi31
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28876424">28876424</a> 152 Streptococcus pyogenes phage 315.5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50591500">50591500</a> 156 Streptococcus suis 8 op with a Sf II helicase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5730278">5730278</a> 175 Lactobacillus bacteriophage phi adh
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=19746261">19746261</a> 160 Streptococcus pyogenes MGAS8232
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2120163">2120163</a> 158 Lactococcus phage mi7-9
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48697289">48697289</a> **** 185 Bacteriophage phi AT3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=6599325">6599325</a> 180 Lactobacillus casei bacteriophage A2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2352438">2352438</a> 124 Streptococcus thermophilus bacteriophage Sfi21
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=22855034">22855034</a> 145 Bacteriophage phi-105
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52081929">52081929</a> 145 Bacillus licheniformis ATCC 14580
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23455784">23455784</a> 224 Bacteriophage phig<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1">1</a>e
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=28379003">28379003</a> 221 Lactobacillus plantarum WCFS1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48832482">48832482</a> 172 Magnetococcus sp. MC-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23475268">23475268</a> 157 Desulfovibrio desulfuricans G20
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48866342">48866342</a> 114 Oenococcus oeni PSU-1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48860542">48860542</a> 152 Clostridium thermocellum ATCC 27405 op with DNA polymerase elongation subunit 48860541, 48860543: RecB exonuclease
|
||
|
||
|
||
--------------------------------------------
|
||
UL9 like helicases: AEP: Fused to AEP, DNAG: Fused to DNAG , Nt: unknown N-terminal domain
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2529380">2529380</a> DNAG 1228 primase Bacteriophage N15
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=3192713">3192713</a> DNAG 1324 gp37 Bacteriophage N15
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46402121">46402121</a> DNAG 1328 Gp35 Bacteriophage phiKO2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33770544">33770544</a> DNAG 1330 relication protein RepA Bacteriophage PY54
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=42718151">42718151</a> DNAG 1239 putative replication protein RepA Bacteriophage VP882
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=26891737">26891737</a> 857 ORF4 Vibrio harveyi bacteriophage VHML
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=45507489">45507489</a> 1039 COG5008: Tfp pilus assembly protein, ATPase PilU Anabaena variabilis ATCC 29413
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46134762">46134762</a> 1227 hypothetical protein Avar03005489 Anabaena variabilis ATCC 29413
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17233243">17233243</a> 1210 hypothetical protein all7227 Nostoc sp. PCC 7120
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17133059">17133059</a> 987 alr3925 Nostoc sp. PCC 7120
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53688634">53688634</a> 973 COG0621: 2-methylthioadenine synthetase Nostoc punctiforme PCC 73102
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=23128374">23128374</a> 1157 hypothetical protein Npun02004018 Nostoc punctiforme PCC 73102
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53688214">53688214</a> 1239 hypothetical protein Npun02003175 Nostoc punctiforme PCC 73102
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17233046">17233046</a> 1132 hypothetical protein all7030 Nostoc sp. PCC 7120
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=38505705">38505705</a> 958 hypothetical protein Synechocystis sp. PCC 6803
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=47060312">47060312</a> 999 pANL1 Synechococcus elongatus PCC 7942
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21230917">21230917</a> 1187 phage-related protein Xanthomonas campestris pv. campestris str. ATCC 33913
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=21107852">21107852</a> 1181 phage-related protein Xanthomonas axonopodis pv. citri str. 306
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32470517">32470517</a> 943 hypothetical protein Synechococcus sp. PCC 7002
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53734852">53734852</a> 1412 COG1156: Archaeal/vacuolar-type H+-ATPase subunit B Crocosphaera watsonii WH 8501
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48891251">48891251</a> 1011 COG1112: Superfamily I DNA and RNA helicases and helicase subunits Trichodesmium erythraeum IMS101
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46134466">46134466</a> Nt 1065 COG1198: Primosomal protein N' (replication factor Y) - superfamily II helicase Anabaena variabilis ATCC 29413
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=16332075">16332075</a> 1036 hypothetical protein slr0554 Synechocystis sp. PCC 6803
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46117606">46117606</a> 691 hypothetical protein Cwat03007438 Crocosphaera watsonii WH 8501
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46119958">46119958</a> 959 COG0556: Helicase subunit of the DNA excision repair complex Crocosphaera watsonii WH 8501
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51512046">51512046</a> 928 putative DEAD/DEAH box helicase Bacteriophage T5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46401844">46401844</a> 928 putative replication origin binding protein Bacteriophage T5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=247792">247792</a> AEP 876 247792 repA Synechococcus sp. PCC 7942
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1709433">1709433</a> 787 OBP_HHV7J Replication origin binding protein (OBP)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=51874295">51874295</a> 787 origin-binding protein Human herpesvirus 7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=420401">420401</a> AEP 1102 S35617probable origin-binding protein - African swine fever virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9628155">9628155</a> AEP 1055 helicase African swine fever virus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55818889">55818889</a> AEP 1052 helicase similar to origin binding protein Acanthomoeba polyphaga mimivirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=2653339">2653339</a> 859 replication origin binding protein Bovine herpesvirus type 1.1 (strain Cooper)
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=40787918">40787918</a> 823 UL9 origin-binding protein Bovine herpesvirus 5
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=325513">325513</a> 703 origin-binding protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9628375">9628375</a> 780 originbinding protein Human herpesvirus 6
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=46119153">46119153</a> 609 COG0552: Signal recognition particle GTPase Crocosphaera watsonii WH 8501
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=4996061">4996061</a> 780 originbinding protein Human herpesvirus 6B
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=405176">405176</a> 780 U73 Human herpesvirus 6B
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=50313294">50313294</a> 887 origin-binding protein Equid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9629781">9629781</a> 887 53 Equid herpesvirus 4
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=32455419">32455419</a> 876 hypothetical protein Synechococcus elongatus PCC 7942
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=27363868">27363868</a> 832 Phage-related protein Vibrio vulnificus CMCP6
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9629278">9629278</a> 867 UL9 Human herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=30844251">30844251</a> 874 Ori binding protein Cercopithecine herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9629389">9629389</a> 851 UL9 Human herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=56694731">56694731</a> 879 origin binding protein Cercopithecine herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=662096">662096</a> 659 replication origin-binding protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=7385024">7385024</a> 835 AF206304_3 ORF51 Human herpesvirus 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9625924">9625924</a> 835 helicase Human herpesvirus 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=743484">743484</a> 834 2012335ADNA replication origin-binding protein
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=12025120">12025120</a> 839 AF291866_13 UL9 Ori binding protein Meleagrid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=10180713">10180713</a> 841 AF243438_16 UL9 ori binding protein-like protein Gallid herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=9635044">9635044</a> 841 OBP Gallid herpesvirus 2
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11095841">11095841</a> 839 AF282130_11 origin of replication binding protein Meleagrid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=971247">971247</a> 841 UL9 homolog Gallid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=52551078">52551078</a> 830 UL9 Fibropapilloma-associated turtle herpesvirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=1478256">1478256</a> 843 UL9 Suid herpesvirus 1 strain Kaplan
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=11036597">11036597</a> 816 AF275348_47 origin binding protein Cercopithecine herpesvirus 7
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=5708117">5708117</a> 892 origin-binding protein Gallid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=10834878">10834878</a> 875 UL9 protein Gallid herpesvirus 3
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34500254">34500254</a> 880 ICP9 Psittacid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=55818882">55818882</a> 795 replication origin binding protein Acanthomoeba polyphaga mimivirus
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48696728">48696728</a> AEP 1181 ORF7 Ostreid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48696783">48696783</a> 596 ORF67 Ostreid herpesvirus 1
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=48696728">48696728</a> 1181 ORF49 Ostreid herpesvirus 1
|
||
-------------------------------------
|
||
Phage T1p09 like ATPase
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29341940">29341940</a> 380 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29338946">29338946</a> 615 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29339011">29339011</a> 612 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29339297">29339297</a> 811 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53714065">53714065</a> 767 Bacteroides fragilis YCH46
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=60493694">60493694</a> 791 Bacteroides fragilis NCTC 9343
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29337707">29337707</a> 775 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29338013">29338013</a> 791 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=60494935">60494935</a> 490 Bacteroides fragilis NCTC 9343
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=53715554">53715554</a> 499 Bacteroides fragilis YCH46
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34396954">34396954</a> 458 Porphyromonas gingivalis W83
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=29337532">29337532</a> 452 Bacteroides thetaiotaomicron VPI-5482
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=17983721">17983721</a> 509 Brucella melitensis 16M
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=57545655">57545655</a> 500 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=57434420">57434420</a> 494 Escherichia coli
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=26249487">26249487</a> 502 Escherichia coli CFT073
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=33865879">33865879</a> 806 Synechococcus sp. WH 8102
|
||
<a target=hotgi_overjumps href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&dopt=GenPept&uid=34102556">34102556</a> 469 Chromobacterium violaceum ATCC 12472
|
||
|
||
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX END OF SUPPLEMENTARY MATERIAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXx</pre>
|
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