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<title>Systems analyses of RNA-Seq transcriptomic responses in dorsal horn during carrageenan-induced inflammation | NIH Research Festival</title>
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<article><div class="banner banner--gray banner--compact" style="--banner-background-image: url('/sites/default/files/media/image/2021-03/2015.jpg');--banner-background-focus: 50% 50%"><div class="banner__wrapper"><div class="banner__container"><h2 class="banner__heading">NIH Research Festival</h2><div class="banner__content"><p><strong><time datetime="2015-09-16">September 16</time> – <time datetime="2015-09-18">18, 2015</time></strong></p></div></div></div></div></article>
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<div class="section"><div data-drupal-messages-fallback class="hidden"></div></div><main role="main"><div id="main-content" tabindex="-1"></div><div class="section"><div class="content-sidebar"><div class="content-sidebar__main"><div class="content-sidebar__main-content"><div id="block-mainpagecontent-2"><article><h1>Systems analyses of RNA-Seq transcriptomic responses in dorsal horn during carrageenan-induced inflammation</h1><div class="schedule"><div class="schedule__label"><div class="schedule__label-text"><time datetime="2015-09-18">Friday, September 18, 2015</time>
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– Poster Session V
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</div></div><div class="schedule__content"><div class="schedule__item"><div class="schedule__time">2:00 – 3:30 p.m.</div><div class="schedule__description"><p><strong>FAES Terrace</strong></p></div><div class="schedule__description"><p><strong>CC</strong></p></div><div class="schedule__description"><p><strong>NEURO-37</strong></p></div></div></div></div><h2>Authors</h2><ul><li>MR Sapio</li><li>SC Goswami</li><li>JR Gross</li><li>GL Gonnella</li><li>JM Keller</li><li>HD Kominsky</li><li>AJ Mannes</li><li>MJ Iadarola</li></ul><h2>Abstract</h2><p>Persistent pain states are known to engage new gene expression programs in nociceptive circuits in the dorsal horn. Up-regulation of genes coding for the endogenous opioid peptides was demonstrated in the late 1980’s and various techniques have been used to expand the repertoire of nociception-regulated genes. Recently, a new method based on next generation DNA sequencing, called RNA-Seq, has been developed for measuring gene expression. RNA-Seq provides accurate quantitation and comprehensive assessment of transcript levels of all genes expressed in a cell or tissue. We used RNA-Seq to analyze gene expression in the dorsal horn of the spinal cord 2 and 48 hours after experimental peripheral inflammation. Elevated expression of multiple transcription factors occurred at 2hrs with return to control levels by 48 hrs, these included known transcription factors c-Fos and JunB, and 3 paralogs of NGFI-B (nuclear receptor family). Several neuropeptide transcripts displayed long-term increases including prodynorphin, proenkephalin and protachykinin, as expected. A total of fifty-five genes exhibited 1.5-fold increases or higher; lowering the threshold to 1.25-fold garnered another ~150 significantly elevated transcripts. Many of the most highly expressed and highly differential genes are immune-like and are part of the microglial complement system. This induction occurs in the absence of other inflammation markers, and is long-lived. We conclude that neuronal activity is accompanied by complement-dependent synaptic rearrangement by microglia. The data demonstrate that a cadre of state-dependent drivers and downstream effector molecules are induced to control nociceptive primary and secondary sensitization processes that occur in persistent pain states.</p><p><strong>Scientific Focus Area</strong>: Neuroscience</p><p class="updated"><small>This page was last updated on Friday, March 26, 2021</small></p></article>
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