343 lines
12 KiB
HTML
343 lines
12 KiB
HTML
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<li><a href="/dashboard/">Home</a></li>
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<li class='active'>Sample CTCF validation</li>
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<!-- Overridden analysis/detail_action.html -->
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<h2>
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<span>Sample CTCF validation</span>
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<div class='dropdown pull-right'>
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<a class='btn btn-primary' href="/dashboard/analysis/905-sample-ctcf-validation/visual/" >
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<i class="fa fa-download fa-fw"></i> Download zip (requires login)</a></li>
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</h2>
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<table class='table table-condensed'>
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<tbody>
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<tr>
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<th style='width: 15%'>Description</th>
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<td style='width: 85%'>
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Sample validation of CTCF ChIP-seq data. For the test dataset, a validated CTCF ChIP-seq dataset in ES-Bruce4 cells generated by the Ren Lab for the ENCODE project was used. The test data was then run against all other CTCF ChIP-seq datasets hosted on ORIO. RefSeq TSSs were used as the feature list.
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</td>
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</tr>
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<tr>
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<th>Anchor</th>
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<td>center</td>
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</tr>
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<tr>
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<th>Bin start</th>
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<td>-2500</td>
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</tr>
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<tr>
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<th>Number of bins</th>
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<td>50</td>
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</tr>
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<tr>
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<th>Bin size</th>
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<td>100</td>
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</tr>
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<tr>
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<th>Public</th>
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<td><i class='fa fa-check-square-o' title'checked'></i></td>
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</tr>
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<tr>
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<th>Validated</th>
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<td><i class='fa fa-check-square-o' title'checked'></i></td>
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</tr>
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<tr>
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<th>Genome assembly</th>
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<td>mm9</td>
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</tr>
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<tr>
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<th>Date created</th>
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<td>Dec. 13, 2016, 3:53 p.m.</td>
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</tr>
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<tr>
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<th>Date updated</th>
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<td>Dec. 16, 2016, 10:37 a.m.</td>
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</tr>
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<tr>
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<th>Feature list</th>
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<td>
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<span>mm9_RefSeq_TSSs</span>
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</td>
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</tr>
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<tr>
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<th>Sort vector</th>
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<td>
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<span><i><none></i></span>
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</td>
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</tr>
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<tr>
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<th>User datasets</th>
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<td>
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<ul>
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<li><span>RenLab-CTCF-mESC</span></li>
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</ul>
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</td>
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</tr>
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<tr>
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<th>ENCODE datasets</th>
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<td>
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<ul>
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<li>wgEncodeLicrTfbsCbellumCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsBmarrowCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsLimbCtcfUE14halfC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsThymusCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsEsb4CtcfME0C57bl6StdSig</li>
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<li>wgEncodePsuTfbsG1eer4e2CtcfME0S129InputRepSignalRep2</li>
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<li>wgEncodeLicrTfbsLungCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsHeartCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsWbrainCtcfUE14halfC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsOlfactCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsSmintCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodePsuTfbsG1eer4e2CtcfME0S129InputRepSignalRep1</li>
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<li>wgEncodeLicrTfbsTestisCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsMelCtcfMImmortalC57bl6StdSig</li>
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<li>wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputRepSignalRep1</li>
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<li>wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputSig</li>
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<li>wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputRepSignalRep2</li>
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<li>wgEncodeLicrTfbsBmdmCtcfFAdult8wksC57bl6StdSig</li>
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<li>wgEncodePsuTfbsG1eCtcfME0S129InputRepSignalRep1</li>
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<li>wgEncodeLicrTfbsKidneyCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodePsuTfbsMelCtcfMImmortalC57bl6InputRepSignalRep2</li>
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<li>wgEncodeLicrTfbsCortexCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsSpleenCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeLicrTfbsMefCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodePsuTfbsG1eCtcfME0S129InputSig</li>
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<li>wgEncodePsuTfbsG1eCtcfME0S129InputRepSignalRep2</li>
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<li>wgEncodePsuTfbsMelCtcfMImmortalC57bl6InputSig</li>
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<li>wgEncodePsuTfbsMelCtcfMImmortalC57bl6InputRepSignalRep1</li>
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<li>wgEncodeLicrTfbsLiverCtcfMAdult8wksC57bl6StdSig</li>
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<li>wgEncodeCaltechTfbsC2c12CtcfFCntrl32bPcr2xSigRep1</li>
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<li>wgEncodePsuTfbsG1eer4e2CtcfME0S129InputSig</li>
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</ul>
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</td>
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</tr>
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</tbody>
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</table>
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