nih-gov/ncbiinsights.ncbi.nlm.nih.gov/wp-json/wp/v2/posts/7024

{"id":7024,"date":"2021-10-21T09:00:47","date_gmt":"2021-10-21T13:00:47","guid":{"rendered":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/?p=7024"},"modified":"2021-10-21T09:30:10","modified_gmt":"2021-10-21T13:30:10","slug":"gene-ensembl-comparison-expansion","status":"publish","type":"post","link":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/","title":{"rendered":"New NCBI Gene Ensembl Comparison Expansion"},"content":{"rendered":"<p>NCBI Gene has added\u00a0<a class=\"external-link\" title=\"Follow link\" href=\"https:\/\/www.ensembl.info\/2020\/06\/25\/ensembl-rapid-release\/\" target=\"_blank\" rel=\"nofollow noopener\">Ensembl Rapid Releases<\/a>\u00a0to the calculation of matching annotations between NCBI RefSeq and Ensembl. This has resulted in the inclusion of over 60 additional assemblies for a total of 241 organisms represented in the set. Matches are made based on transcript and CDS comparisons, and Ensembl gene, transcript, and protein identifiers for annotations similar to the NCBI RefSeq annotations are reported in NCBI Gene and in the gene2ensembl file on the\u00a0<a class=\"external-link\" title=\"Follow link\" href=\"https:\/\/ftp.ncbi.nlm.nih.gov\/gene\/DATA\/?utm_source=Blog&amp;utm_medium=Referral&amp;utm_content=link2\" target=\"_blank\" rel=\"nofollow noopener\">Gene FTP site<\/a>. The Ensembl annotation is also available in the graphical view and in\u00a0<a class=\"external-link\" title=\"Follow link\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/gdv\/\" target=\"_blank\" rel=\"nofollow noopener\">NCBI&#8217;s Genome Data Viewer<\/a>\u00a0to give you a side-by-side view of how the annotations compare. Check out blue whale\u00a0<a class=\"external-link\" title=\"Follow link\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/gene\/118881917\" target=\"_blank\" rel=\"nofollow noopener\">E2F1\u00a0<\/a>for an example.<\/p>\n<p><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" data-attachment-id=\"7046\" data-permalink=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/gene_ensembl_comp\/\" data-orig-file=\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?fit=1310%2C751&amp;ssl=1\" data-orig-size=\"1310,751\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;,&quot;orientation&quot;:&quot;0&quot;}\" data-image-title=\"gene_ensembl_comp\" data-image-description=\"\" data-image-caption=\"\" data-medium-file=\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?fit=300%2C172&amp;ssl=1\" data-large-file=\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?fit=1024%2C587&amp;ssl=1\" class=\"alignnone size-large wp-image-7046\" src=\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?resize=1024%2C587&#038;ssl=1\" alt=\"\" width=\"1024\" height=\"587\" srcset=\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?resize=1024%2C587&amp;ssl=1 1024w, https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?resize=300%2C172&amp;ssl=1 300w, https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?resize=150%2C86&amp;ssl=1 150w, https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?resize=768%2C440&amp;ssl=1 768w, https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?resize=1200%2C688&amp;ssl=1 1200w, https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?resize=270%2C155&amp;ssl=1 270w, https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp.png?w=1310&amp;ssl=1 1310w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><strong><em>Figure 1. <\/em><\/strong><em>Balaenoptera musculus <\/em><em>E2F transcription factor 1 in <\/em><em>Genome Data Viewer<\/em><\/p>\n","protected":false},"excerpt":{"rendered":"<p>NCBI Gene has added\u00a0Ensembl Rapid Releases\u00a0to the calculation of matching annotations between NCBI RefSeq and Ensembl. This has resulted in the inclusion of over 60 additional assemblies for a total of 241 organisms represented in the set. Matches are made based on transcript and CDS comparisons, and Ensembl gene, transcript, and protein identifiers for annotations &hellip; <a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">New NCBI Gene Ensembl Comparison Expansion<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":42204617,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"NCBI Gene Ensembl Comparison Expansion","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","enabled":false},"version":2}},"categories":[2248],"tags":[9714,27739816],"table_tags":[],"class_list":["post-7024","post","type-post","status-publish","format-standard","hentry","category-whats-new","tag-gene","tag-refseq"],"jetpack_publicize_connections":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>New NCBI Gene Ensembl Comparison Expansion - NCBI Insights<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"New NCBI Gene Ensembl Comparison Expansion - NCBI Insights\" \/>\n<meta property=\"og:description\" content=\"NCBI Gene has added\u00a0Ensembl Rapid Releases\u00a0to the calculation of matching annotations between NCBI RefSeq and Ensembl. This has resulted in the inclusion of over 60 additional assemblies for a total of 241 organisms represented in the set. Matches are made based on transcript and CDS comparisons, and Ensembl gene, transcript, and protein identifiers for annotations &hellip; Continue reading New NCBI Gene Ensembl Comparison Expansion &rarr;\" \/>\n<meta property=\"og:url\" content=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/\" \/>\n<meta property=\"og:site_name\" content=\"NCBI Insights\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/ncbi.nlm\" \/>\n<meta property=\"article:published_time\" content=\"2021-10-21T13:00:47+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2021-10-21T13:30:10+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp-1024x587.png\" \/>\n<meta name=\"author\" content=\"NCBI Staff\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@NCBI\" \/>\n<meta name=\"twitter:site\" content=\"@NCBI\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"NCBI Staff\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/\"},\"author\":{\"name\":\"NCBI Staff\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#\/schema\/person\/4f41ea6a31cea38a9a1b1419c048e50b\"},\"headline\":\"New NCBI Gene Ensembl Comparison Expansion\",\"datePublished\":\"2021-10-21T13:00:47+00:00\",\"dateModified\":\"2021-10-21T13:30:10+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/\"},\"wordCount\":131,\"commentCount\":0,\"publisher\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#organization\"},\"image\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2021\/10\/gene_ensembl_comp-1024x587.png\",\"keywords\":[\"Gene\",\"RefSeq\"],\"articleSection\":[\"What's New\"],\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"CommentAction\",\"name\":\"Comment\",\"target\":[\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/#respond\"]}]},{\"@type\":\"WebPage\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/\",\"url\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2021\/10\/21\/gene-ensembl-comparison-expansion\/\",\"name\":\"New NCBI Gene Ensembl Comparison Expansion - 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