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{"id":12314,"date":"2023-10-18T11:51:14","date_gmt":"2023-10-18T15:51:14","guid":{"rendered":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/?p=12314"},"modified":"2024-07-01T12:27:24","modified_gmt":"2024-07-01T16:27:24","slug":"ncbi-datasets-access-sequence-data","status":"publish","type":"post","link":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/18\/ncbi-datasets-access-sequence-data\/","title":{"rendered":"NCBI Datasets: Easily Access and Download Sequence Data and Metadata"},"content":{"rendered":"<h3><i><span data-contrast=\"auto\">Effective June 2024, NCBI Datasets will replace legacy Genome and Assembly web resources<\/span><\/i><span data-ccp-props=\"{"201341983":0,"335559739":0,"335559740":240}\">\u00a0<\/span><\/h3>\n<p><span data-contrast=\"none\">As part of our ongoing effort to enhance your experience and modernize our services, NCBI will gradually replace the legacy <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=datasets-sequence-metadata-20221018\">Genome<\/a> and <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/assembly\/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=datasets-sequence-metadata-20221018\">Assembly<\/a> resources with the newly introduced\u202f<\/span><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=datasets-sequence-metadata-20221018\"><span data-contrast=\"none\">NCBI Datasets<\/span><\/a><span data-contrast=\"none\">\u202fresource. NCBI Datasets is a continually evolving platform designed to provide easy and intuitive access to NCBI’s sequence data and metadata.<\/span><span data-ccp-props=\"{"201341983":0,"335559739":0,"335559740":240}\">\u00a0<\/span><\/p>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"1\" data-list-defn-props=\"{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"\uf0b7","469777815":"multilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">The legacy Genome and Assembly web resources will no longer be available after June 2024<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"1\" data-list-defn-props=\"{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"\uf0b7","469777815":"multilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">There will be no changes to how you access the databases using E-Utilities or EDirect\u00a0<\/span><\/li>\n<\/ul>\n<p><!--more--><\/p>\n<h5><b><span data-contrast=\"auto\">Why are we making this change?<\/span><\/b><span data-ccp-props=\"{"201341983":0,"335559739":0,"335559740":240}\">\u00a0<\/span><\/h5>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"\uf0b7","469777815":"hybridMultilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">To provide a streamlined experience that integrates genome, organism, and gene information\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"\uf0b7","469777815":"hybridMultilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"2\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">To help you retrieve large datasets that enable big data analyses\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"\uf0b7","469777815":"hybridMultilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"3\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">To deliver data and metadata together and support better reuse and attribution\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"3\" data-list-defn-props=\"{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"\uf0b7","469777815":"hybridMultilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"4\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">To provide you with a single entry point to genome datasets<\/span><\/li>\n<\/ul>\n<h5><b><span data-contrast=\"auto\">Features & Benefits of NCBI Datasets<\/span><\/b><span data-ccp-props=\"{"201341983":0,"335559739":0,"335559740":240}\">\u00a0<\/span><\/h5>\n<ol>\n<li><span style=\"font-size: 17px;\"><b>Comprehensive Data<\/b>: Access assembled genome sequences, annotations, and metadata, including transcripts and proteins from a single webpage\u00a0<\/span><\/li>\n<li data-leveltext=\"%1.\" data-font=\"Calibri\" data-listid=\"2\" data-list-defn-props=\"{"335552541":0,"335559684":-1,"335559685":720,"335559991":360,"469769242":[65533,0],"469777803":"left","469777804":"%1.","469777815":"multilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><b>Flexible Search Options<\/b>: Easily retrieve data using organism names, assembly, WGS, or BioProject accessions\u00a0<\/span><\/li>\n<li data-leveltext=\"%1.\" data-font=\"Calibri\" data-listid=\"2\" data-list-defn-props=\"{"335552541":0,"335559684":-1,"335559685":720,"335559991":360,"469769242":[65533,0],"469777803":"left","469777804":"%1.","469777815":"multilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><b>Scalable Data Retrieval<\/b>: Request data for multiple genomes and file types in a single request, simplifying and expediting the download of large datasets\u00a0<\/span><\/li>\n<li data-leveltext=\"%1.\" data-font=\"Calibri\" data-listid=\"2\" data-list-defn-props=\"{"335552541":0,"335559684":-1,"335559685":720,"335559991":360,"469769242":[65533,0],"469777803":"left","469777804":"%1.","469777815":"multilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><b>Well-Documented Metadata<\/b>: Metadata is sourced from multiple databases, and metadata schemas are thoroughly documented<\/span><\/li>\n<li data-leveltext=\"%1.\" data-font=\"Calibri\" data-listid=\"2\" data-list-defn-props=\"{"335552541":0,"335559684":-1,"335559685":720,"335559991":360,"469769242":[65533,0],"469777803":"left","469777804":"%1.","469777815":"multilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><b>Interoperable metadata formats<\/b>: Metadata formats are machine-readable and easily converted to human-readable forms<\/span><\/li>\n<li data-leveltext=\"%1.\" data-font=\"Calibri\" data-listid=\"2\" data-list-defn-props=\"{"335552541":0,"335559684":-1,"335559685":720,"335559991":360,"469769242":[65533,0],"469777803":"left","469777804":"%1.","469777815":"multilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><b>Taxonomy-Focused Portal<\/b>: Access genes, genomes, and other NCBI resources through a taxonomy-focused portal<\/span><\/li>\n<li data-leveltext=\"%1.\" data-font=\"Calibri\" data-listid=\"2\" data-list-defn-props=\"{"335552541":0,"335559684":-1,"335559685":720,"335559991":360,"469769242":[65533,0],"469777803":"left","469777804":"%1.","469777815":"multilevel"}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><b>Consistency<\/b>: Enjoy access to consistent data access across web and programmatic interfaces\u00a0<\/span><\/li>\n<\/ol>\n<h5 aria-level=\"5\"><b><span data-contrast=\"none\">Stay up to date<\/span><\/b><span data-ccp-props=\"{"134233117":false,"134233118":false,"201341983":0,"335559738":0,"335559739":0,"335559740":240}\">\u00a0<\/span><\/h5>\n<p><span data-contrast=\"none\">NCBI Datasets is part of the\u202f<\/span><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/comparative-genomics-resource?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=datasets-sequence-metadata-20221018\"><span data-contrast=\"none\">NIH Comparative Genomics Resource (CGR)<\/span><\/a>. <span data-contrast=\"none\">CGR facilitates reliable comparative genomics analyses\u202ffor all eukaryotic organisms through an NCBI Toolkit and community collaboration.\u202f\u202f\u202f\u202f<\/span><span data-ccp-props=\"{"134233117":false,"134233118":false,"201341983":0,"335559738":0,"335559739":0,"335559740":240}\">\u00a0<\/span><\/p>\n<p><a href=\"https:\/\/public.govdelivery.com\/accounts\/USNLMOCPL\/subscriber\/new?topic_id=USNLMOCPL_50%22\"><span data-contrast=\"none\">Join our mailing list<\/span><\/a><span data-contrast=\"none\">\u202fto keep up to date with NCBI Datasets and other CGR news.<\/span><span data-ccp-props=\"{"134233117":false,"134233118":false,"201341983":0,"335559738":0,"335559739":0,"335559740":240}\">\u00a0<\/span><\/p>\n<h5 aria-level=\"5\"><b><span data-contrast=\"none\">Questions?<\/span><\/b><span data-ccp-props=\"{"134233117":false,"134233118":false,"201341983":0,"335559738":0,"335559739":0,"335559740":240}\">\u00a0<\/span><\/h5>\n<p><span data-contrast=\"none\">If you have questions or would like to provide feedback, please reach out to us at <\/span><a href=\"mailto:info@ncbi.nlm.nih.gov\"><span data-contrast=\"none\">info@ncbi.nlm.nih.gov<\/span><\/a><span data-contrast=\"none\">.\u202f\u202f<\/span><span data-ccp-props=\"{"134233117":false,"134233118":false,"201341983":0,"335559738":0,"335559739":0,"335559740":240}\">\u00a0<\/span><\/p>\n<p><span data-ccp-props=\"{"201341983":0,"335559739":0,"335559740":240}\">\u00a0<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Effective June 2024, NCBI Datasets will replace legacy Genome and Assembly web resources\u00a0 As part of our ongoing effort to enhance your experience and modernize our services, NCBI will gradually replace the legacy Genome and Assembly resources with the newly introduced\u202fNCBI Datasets\u202fresource. NCBI Datasets is a continually evolving platform designed to provide easy and intuitive … <a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/18\/ncbi-datasets-access-sequence-data\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">NCBI Datasets: Easily Access and Download Sequence Data and Metadata<\/span> <span class=\"meta-nav\">→<\/span><\/a><\/p>\n","protected":false},"author":42204617,"featured_media":13520,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"NCBI Datasets: Easily Access and Download Sequence Data and Metadata","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","enabled":false},"version":2}},"categories":[2248],"tags":[6595,693060768,26986,693060836],"table_tags":[],"class_list":["post-12314","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-whats-new","tag-assembly","tag-comparative-genomics-resource-cgr","tag-genome","tag-ncbi-datasets"],"jetpack_publicize_connections":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>NCBI Datasets: Easily Access and Download Sequence Data and Metadata - NCBI Insights<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/18\/ncbi-datasets-access-sequence-data\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"NCBI Datasets: Easily Access and Download Sequence Data and Metadata - NCBI Insights\" \/>\n<meta property=\"og:description\" content=\"Effective June 2024, NCBI Datasets will replace legacy Genome and Assembly web resources\u00a0 As part of our ongoing effort to enhance your experience and modernize our services, NCBI will gradually replace the legacy Genome and Assembly resources with the newly introduced\u202fNCBI Datasets\u202fresource. 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