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<title>NCBI Insights</title>
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<title>New Ranks in NCBI Taxonomy: Domain & Realm</title>
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<link>https://ncbiinsights.ncbi.nlm.nih.gov/2025/02/27/new-ranks-ncbi-taxonomy/</link>
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<dc:creator><![CDATA[NCBI Staff]]></dc:creator>
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<pubDate>Thu, 27 Feb 2025 15:07:31 +0000</pubDate>
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<category><![CDATA[What's New]]></category>
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<category><![CDATA[NCBI Datasets]]></category>
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<description><![CDATA[As previously announced, NCBI continues to make improvements to our Taxonomy resource. There have been recent updates to the International Code of Nomenclature of Prokaryotes (ICNP) and proposals by the International Committee on Taxonomy of Viruses (ICTV). As a result, NCBI Taxonomy has discontinued the use of rank “superkingdom” to classify organisms into Archaea, Bacteria, Eukaryota, … <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2025/02/27/new-ranks-ncbi-taxonomy/" class="more-link">Continue reading <span class="screen-reader-text">New Ranks in NCBI Taxonomy: Domain & Realm</span> <span class="meta-nav">→</span></a>]]></description>
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<post-id xmlns="com-wordpress:feed-additions:1">14432</post-id> </item>
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<title>New! Introducing the Multiple Comparative Genome Viewer (MCGV) Beta Release</title>
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<link>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/16/new-mcgv-beta-release/</link>
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<dc:creator><![CDATA[NCBI Staff]]></dc:creator>
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<pubDate>Thu, 16 Jan 2025 15:12:44 +0000</pubDate>
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<category><![CDATA[What's New]]></category>
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<category><![CDATA[Comparative Genome Viewer (CGV)]]></category>
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<category><![CDATA[Multiple Comparative Genome Viewer (MCGV)]]></category>
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<description><![CDATA[NLM’s NCBI is excited to introduce the Multiple Comparative Genome Viewer (MCGV), a new tool in active development that allows you to visualize an alignment of multiple eukaryotic genomes. While our existing Comparative Genome Viewer (CGV) allows you to compare pairs of eukaryotic assemblies, the new MCGV tool can help you analyze multiple assemblies in … <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/16/new-mcgv-beta-release/" class="more-link">Continue reading <span class="screen-reader-text">New! Introducing the Multiple Comparative Genome Viewer (MCGV) Beta Release</span> <span class="meta-nav">→</span></a>]]></description>
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<post-id xmlns="com-wordpress:feed-additions:1">14384</post-id> </item>
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<title>An updated bacterial and archaeal reference genome collection is available!</title>
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<link>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/14/updated-bacterial-and-archaeal-reference-genome-collection-2/</link>
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<comments>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/14/updated-bacterial-and-archaeal-reference-genome-collection-2/#respond</comments>
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<dc:creator><![CDATA[NCBI Staff]]></dc:creator>
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<pubDate>Tue, 14 Jan 2025 16:40:55 +0000</pubDate>
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<category><![CDATA[What's New]]></category>
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<category><![CDATA[Basic Local Alignment Search Tool (BLAST)]]></category>
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<category><![CDATA[RefSeq]]></category>
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<guid isPermaLink="false">https://ncbiinsights.ncbi.nlm.nih.gov/?p=14373</guid>
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<description><![CDATA[Download the updated bacterial and archaeal reference genome collection! We built this collection of 21,258 genomes by selecting the “best” genome assembly for each species among the 400,000+ prokaryotic genomes in RefSeq. What’s new? As previously announced, we updated our release process: There is now an incremental process. In addition to quarterly releases, there will … <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/14/updated-bacterial-and-archaeal-reference-genome-collection-2/" class="more-link">Continue reading <span class="screen-reader-text">An updated bacterial and archaeal reference genome collection is available!</span> <span class="meta-nav">→</span></a>]]></description>
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<title>NCBI Resources Highlighted in 2025 Nucleic Acids Research Database Issue</title>
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<link>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/13/ncbi-resources-2025-nucleic-acids-research-database-issue/</link>
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<comments>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/13/ncbi-resources-2025-nucleic-acids-research-database-issue/#respond</comments>
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<dc:creator><![CDATA[NCBI Staff]]></dc:creator>
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<pubDate>Mon, 13 Jan 2025 15:09:27 +0000</pubDate>
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<category><![CDATA[What's New]]></category>
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<category><![CDATA[ClinVar]]></category>
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<category><![CDATA[Clusters of Orthologous Genes (COG)]]></category>
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<category><![CDATA[Comparative Genomics Resource (CGR)]]></category>
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<guid isPermaLink="false">https://ncbiinsights.ncbi.nlm.nih.gov/?p=14318</guid>
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<description><![CDATA[The 2025 Nucleic Acids Research Database Issue features papers from NCBI staff on ClinVar, PubChem, GenBank, RefSeq, and more. The citations are available in PubMed with full-text available in PubMed Central (PMC). To read an article, click on the PMCID number listed below. Database resources of the National Center for Biotechnology Information in 2025 PMCID: PMC11701734 NCBI provides online … <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/13/ncbi-resources-2025-nucleic-acids-research-database-issue/" class="more-link">Continue reading <span class="screen-reader-text">NCBI Resources Highlighted in 2025 Nucleic Acids Research Database Issue</span> <span class="meta-nav">→</span></a>]]></description>
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<title>RefSeq Release 228 is Available!</title>
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<link>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/10/refseq-release-228/</link>
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<comments>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/10/refseq-release-228/#respond</comments>
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<dc:creator><![CDATA[NCBI Staff]]></dc:creator>
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<pubDate>Fri, 10 Jan 2025 15:45:37 +0000</pubDate>
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<category><![CDATA[What's New]]></category>
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<category><![CDATA[Comparative Genomics Resource (CGR)]]></category>
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<category><![CDATA[Eukaryotic genome annotation]]></category>
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<category><![CDATA[NCBI Datasets]]></category>
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<category><![CDATA[RefSeq]]></category>
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<guid isPermaLink="false">https://ncbiinsights.ncbi.nlm.nih.gov/?p=14345</guid>
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<description><![CDATA[Check out RefSeq release 228, now available online and from the FTP site. You can access RefSeq data through NCBI Datasets. The release is provided in several directories as a complete dataset and also as divided by logical groupings. What’s included in this release? As of January 3, 2025, this full release incorporates genomic, transcript, and protein data containing: … <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/10/refseq-release-228/" class="more-link">Continue reading <span class="screen-reader-text">RefSeq Release 228 is Available!</span> <span class="meta-nav">→</span></a>]]></description>
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<post-id xmlns="com-wordpress:feed-additions:1">14345</post-id> </item>
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<item>
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<title>Access Avian Influenza A (H5N1) Virus Sequences from the Current Outbreak at NCBI</title>
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<link>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/08/avian-influenza-a-h5n1-virus-sequences-from-ncbi/</link>
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<comments>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/08/avian-influenza-a-h5n1-virus-sequences-from-ncbi/#respond</comments>
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<dc:creator><![CDATA[NCBI Staff]]></dc:creator>
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<pubDate>Wed, 08 Jan 2025 16:20:46 +0000</pubDate>
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<category><![CDATA[What's New]]></category>
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<category><![CDATA[GenBank]]></category>
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<category><![CDATA[Influenza]]></category>
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<category><![CDATA[NCBI Datasets]]></category>
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<category><![CDATA[NCBI Nucleotide]]></category>
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<category><![CDATA[NCBI Virus]]></category>
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<guid isPermaLink="false">https://ncbiinsights.ncbi.nlm.nih.gov/?p=14337</guid>
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<description><![CDATA[The U.S. Centers for Disease Control and Prevention (CDC) has been monitoring the ongoing outbreak of the avian influenza A (H5N1) virus. This is widespread globally in wild birds, and has led to sporadic outbreaks in poultry, cows, several species of wild animals, and has been detected in exposed humans. The CDC recently sequenced the … <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/08/avian-influenza-a-h5n1-virus-sequences-from-ncbi/" class="more-link">Continue reading <span class="screen-reader-text">Access Avian Influenza A (H5N1) Virus Sequences from the Current Outbreak at NCBI</span> <span class="meta-nav">→</span></a>]]></description>
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<slash:comments>0</slash:comments>
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<post-id xmlns="com-wordpress:feed-additions:1">14337</post-id> </item>
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<item>
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<title>Top of 2024: A Look at the NCBI Insights Blog </title>
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<link>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/06/top-of-2024-ncbi-insights-blog/</link>
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<comments>https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/06/top-of-2024-ncbi-insights-blog/#respond</comments>
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<dc:creator><![CDATA[NCBI Staff]]></dc:creator>
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<pubDate>Mon, 06 Jan 2025 15:21:49 +0000</pubDate>
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<category><![CDATA[What's New]]></category>
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<category><![CDATA[Basic Local Alignment Search Tool (BLAST)]]></category>
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<category><![CDATA[ClinicalTrials.gov]]></category>
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<category><![CDATA[Database of Genotypes and Phenotypes (dbGaP)]]></category>
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<category><![CDATA[Gene]]></category>
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<category><![CDATA[NCBI Datasets]]></category>
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<category><![CDATA[NCBI Taxonomy]]></category>
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<category><![CDATA[Nucleotide BLAST (blastn)]]></category>
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<category><![CDATA[PubMed Central (PMC)]]></category>
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<guid isPermaLink="false">https://ncbiinsights.ncbi.nlm.nih.gov/?p=14303</guid>
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<description><![CDATA[As we begin a new year, let’s look back at the top NCBI Insights Blog posts of 2024 based on number of views. In case you missed any of these, check them out: Learn more The NCBI Insights Blog is intended to help you better understand NCBI and our resources, explore issues of scientific interest … <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2025/01/06/top-of-2024-ncbi-insights-blog/" class="more-link">Continue reading <span class="screen-reader-text">Top of 2024: A Look at the NCBI Insights Blog </span> <span class="meta-nav">→</span></a>]]></description>
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<post-id xmlns="com-wordpress:feed-additions:1">14303</post-id> </item>
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<item>
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<title>GenBank Release 264.0 Now Available!</title>
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<link>https://ncbiinsights.ncbi.nlm.nih.gov/2024/12/23/genbank-release-264-0-now-available/</link>
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<comments>https://ncbiinsights.ncbi.nlm.nih.gov/2024/12/23/genbank-release-264-0-now-available/#respond</comments>
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<dc:creator><![CDATA[NCBI Staff]]></dc:creator>
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<pubDate>Mon, 23 Dec 2024 17:00:48 +0000</pubDate>
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<category><![CDATA[What's New]]></category>
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<category><![CDATA[GenBank]]></category>
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<guid isPermaLink="false">https://ncbiinsights.ncbi.nlm.nih.gov/?p=14271</guid>
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<description><![CDATA[GenBank release 264.0 (12/19/2024) is now available on the NCBI FTP site. This release has 38.97 trillion bases and 5.36 billion records. The current release has: 254,365,075 traditional records containing 5,085,904,976,338 base pairs of sequence data 3,957,195,833 WGS records containing 32,983,029,087,303 base pairs of sequence data 957,403,887 bulk-oriented TSA records containing 820,128,973,511 base pairs of … <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2024/12/23/genbank-release-264-0-now-available/" class="more-link">Continue reading <span class="screen-reader-text">GenBank Release 264.0 Now Available!</span> <span class="meta-nav">→</span></a>]]></description>
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<post-id xmlns="com-wordpress:feed-additions:1">14271</post-id> </item>
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<item>
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<title>Now Available! NCBI Hidden Markov Models (HMM) Release 17.0</title>
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<link>https://ncbiinsights.ncbi.nlm.nih.gov/2024/12/18/ncbi-hidden-markov-models-release-17-0/</link>
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<comments>https://ncbiinsights.ncbi.nlm.nih.gov/2024/12/18/ncbi-hidden-markov-models-release-17-0/#respond</comments>
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|
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<dc:creator><![CDATA[NCBI Staff]]></dc:creator>
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<pubDate>Wed, 18 Dec 2024 15:53:08 +0000</pubDate>
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<category><![CDATA[What's New]]></category>
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<category><![CDATA[Hidden Markov Models (HMM)]]></category>
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<category><![CDATA[HMMER]]></category>
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<category><![CDATA[Protein Family Model]]></category>
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<category><![CDATA[RefSeq]]></category>
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<guid isPermaLink="false">https://ncbiinsights.ncbi.nlm.nih.gov/?p=14263</guid>
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<description><![CDATA[Download release 17.0 of the NCBI protein profile Hidden Markov models (HMMs) used by the Prokaryotic Genome Annotation Pipeline (PGAP). Search this collection against your favorite prokaryotic proteins to identify their function using the HMMER sequence analysis package. What’s New? Release 17.0 contains: 17,433 HMMs maintained by NCBI 386 new HMMs since release 16.0 You can search … <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2024/12/18/ncbi-hidden-markov-models-release-17-0/" class="more-link">Continue reading <span class="screen-reader-text">Now Available! NCBI Hidden Markov Models (HMM) Release 17.0</span> <span class="meta-nav">→</span></a>]]></description>
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<slash:comments>0</slash:comments>
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<post-id xmlns="com-wordpress:feed-additions:1">14263</post-id> </item>
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<item>
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<title>NCBI Taxonomy: Upcoming Changes to Viruses</title>
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||
<link>https://ncbiinsights.ncbi.nlm.nih.gov/2024/12/11/ncbi-taxonomy-changes-to-viruses/</link>
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||
<comments>https://ncbiinsights.ncbi.nlm.nih.gov/2024/12/11/ncbi-taxonomy-changes-to-viruses/#respond</comments>
|
||
|
||
<dc:creator><![CDATA[NCBI Staff]]></dc:creator>
|
||
<pubDate>Wed, 11 Dec 2024 19:31:51 +0000</pubDate>
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||
<category><![CDATA[What's New]]></category>
|
||
<category><![CDATA[Basic Local Alignment Search Tool (BLAST)]]></category>
|
||
<category><![CDATA[GenBank]]></category>
|
||
<category><![CDATA[Influenza]]></category>
|
||
<category><![CDATA[NCBI Datasets]]></category>
|
||
<category><![CDATA[NCBI Taxonomy]]></category>
|
||
<category><![CDATA[NCBI Virus]]></category>
|
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<category><![CDATA[Sequence Read Archive (SRA)]]></category>
|
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<guid isPermaLink="false">https://ncbiinsights.ncbi.nlm.nih.gov/?p=14249</guid>
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<description><![CDATA[To reflect changes to the International Code of Virus Classification and Nomenclature (ICVCN) made by the International Committee on Taxonomy of Viruses (ICTV), NCBI will add binomial species names to about 3000 viruses. These updates to NCBI Taxonomy are planned for spring 2025, but you can view the changes now in the ICTV’s Virus Metadata Resource. We recognize that the former … <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2024/12/11/ncbi-taxonomy-changes-to-viruses/" class="more-link">Continue reading <span class="screen-reader-text">NCBI Taxonomy: Upcoming Changes to Viruses</span> <span class="meta-nav">→</span></a>]]></description>
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