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<title>Accessing NCBI Biology Resources Using EDirect for Command Line Novices - NCBI Insights</title>
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<meta property="og:description" content="This workshop will give you an introduction to the command line environment before showing you how to use the EDirect suite to access data from several NCBI databases. You do not need to have had prior experience with the command line, but we do recommend that you have some familiarity with NCBI databases get the most of this workshop." />
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<article id="post-11324" class="post-11324 event_listing type-event_listing status-expired has-post-thumbnail hentry event_listing_category-ncbi-education event_listing_type-ncbi-workshop">
|
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<header class="entry-header">
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<h1 class="entry-title">Accessing NCBI Biology Resources Using EDirect for Command Line Novices</h1> </header><!-- .entry-header -->
|
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<div class="wpem-event-single-image"><link rel="image_src" href="https://ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/command_line_workshop4novices.png"/><img data-recalc-dims="1" decoding="async" itemprop="image" content="https://ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/command_line_workshop4novices.png" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/command_line_workshop4novices.png?w=1108&ssl=1" alt="Accessing NCBI Biology Resources Using EDirect for Command Line Novices" /></div>
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<h3 class="wpem-heading-text">Accessing NCBI Biology Resources Using EDirect for Command Line Novices</h3>
|
||
</div>
|
||
<div class="wpem-viewed-event wpem-tooltip wpem-tooltip-bottom"><i class="wpem-icon-eye"></i> 12998 <span class="wpem-tooltiptext">12998 people viewed this event.</span>
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<!-- Event description section start-->
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<p><strong>This workshop concluded on July 18, 2023. The workshop materials are available here, and the video recording will also be made available here about two weeks after the event:</strong> <a class="external-link" href="https://www.nlm.nih.gov/ncbi/workshops/2023-07_intro-to-edirect/workshop-details.html" target="_blank" rel="nofollow noopener">https://www.nlm.nih.gov/ncbi/workshops/2023-07_intro-to-edirect/workshop-details.html</a></p>
|
||
<hr />
|
||
<p>This workshop is for life scientists, including educators and research students, who would like to learn to use the command line for searching and fetching NCBI data. In this workshop, we will begin with an introduction to working in a command line environment and then show you how to use the EDirect suite to access biological data from several NCBI databases. <em>You do not need to have had prior experience with the command line, but we do recommend that you have some familiarity with NCBI databases get the most of this workshop.</em></p>
|
||
<p>In this workshop you will learn how to:</p>
|
||
<ul>
|
||
<li>Write Bash commands with parameters</li>
|
||
<li>Construct search queries using NCBI’s EDirect to search in a specific database</li>
|
||
<li>Download selected data in chosen file formats</li>
|
||
<li>Link to related data in another database</li>
|
||
<li>Combine commands into reproducible workflows</li>
|
||
</ul>
|
||
<p><strong>Note: </strong> This workshop is appropriate for both student researchers themselves as well as educators and mentors who want to help their students learn to use these resources.</p>
|
||
<p>Please see our <a href="https://ncbiinsights.ncbi.nlm.nih.gov/ncbi-outreach-events-faq/">FAQs</a> page for more information and if you still have questions about the NCBI Outreach Events program or this specific workshop, email us at <strong><a href="mailto:workshops@ncbi.nlm.nih.gov">workshops@ncbi.nlm.nih.gov</a> .</strong></p>
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07-18-2023 @ 01:00 PM (EST) </span>
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<span class="wpem-event-date-time-text">07-18-2023 @ 03:00 PM (EST) </span>
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Online event </div>
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<div class="wpem-event-type"><a href="https://ncbiinsights.ncbi.nlm.nih.gov/event_listing_type/ncbi-workshop/"><span class="wpem-event-type-text event-type ncbi-workshop ">NCBI Workshops</span></a></div>
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<div class="wpem-event-category"><a href="https://ncbiinsights.ncbi.nlm.nih.gov/event_listing_category/ncbi-education/"><span class="wpem-event-category-text event-category ncbi-education ">NCBI Education Program</span></a></div>
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