92 lines
60 KiB
HTML
92 lines
60 KiB
HTML
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/*# sourceURL=/css/ampshared.css*/</style><meta property="og:locale" content="en_US"><meta property="og:type" content="article"><meta property="og:title" content="Now Available! Faster BLAST Searches with New Nucleotide Databases - NCBI Insights"><meta property="og:description" content="NEW in BLAST! We made smaller nucleotide databases to help you find the sequences you need faster and easier. You can now find these databases on the main nucleotide BLAST search page (Figure 1) and even download them (Databases: nt_euk, nt_prok, nt_viruses, nt_others). They are separated by organism type, such as eukaryotes, prokaryotes, viruses, and … Continue reading Now Available! Faster BLAST Searches with New Nucleotide Databases →"><meta property="og:url" content="https://ncbiinsights.ncbi.nlm.nih.gov/2023/05/16/split-nucleotide-databases/"><meta property="og:site_name" content="NCBI Insights"><meta property="article:publisher" content="https://www.facebook.com/ncbi.nlm"><meta property="article:published_time" content="2023-05-16T15:30:52+00:00"><meta property="article:modified_time" content="2023-05-16T15:57:39+00:00"><meta property="og:image" content="https://ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png"><meta property="og:image:width" content="1000"><meta property="og:image:height" content="523"><meta property="og:image:type" content="image/png"><meta name="author" content="NCBI Staff"><meta name="twitter:card" content="summary_large_image"><meta name="twitter:creator" content="@NCBI"><meta name="twitter:site" content="@NCBI"><meta name="twitter:label1" content="Written by"><meta name="twitter:data1" 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<h1 class="amp-wp-title">Now Available! Faster BLAST Searches with New Nucleotide Databases</h1>
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<time datetime="2023-05-16T15:30:52+00:00">
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2 years ago </time>
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<amp-img width="1024" height="535" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?fit=1024%2C535&ssl=1" class="attachment-large size-large wp-post-image amp-wp-enforced-sizes i-amphtml-layout-intrinsic i-amphtml-layout-size-defined" alt="Abstract image with nucleotide sequence letters with text 'New BLAST Nucleotide Databases. Find sequences faster and easier!'" srcset="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?w=1000&ssl=1 1000w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?resize=300%2C157&ssl=1 300w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?resize=150%2C78&ssl=1 150w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?resize=768%2C402&ssl=1 768w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?resize=270%2C141&ssl=1 270w" sizes="auto, (max-width: 1024px) 100vw, 1024px" data-hero-candidate="" layout="intrinsic" disable-inline-width="" data-hero i-amphtml-ssr i-amphtml-layout="intrinsic"><i-amphtml-sizer slot="i-amphtml-svc" class="i-amphtml-sizer"><img alt="" aria-hidden="true" class="i-amphtml-intrinsic-sizer" role="presentation" src="data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjUzNSIgd2lkdGg9IjEwMjQiIHhtbG5zPSJodHRwOi8vd3d3LnczLm9yZy8yMDAwL3N2ZyIgdmVyc2lvbj0iMS4xIi8+"></i-amphtml-sizer><img class="i-amphtml-fill-content i-amphtml-replaced-content" decoding="async" loading="lazy" alt="Abstract image with nucleotide sequence letters with text 'New BLAST Nucleotide Databases. Find sequences faster and easier!'" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?fit=1024%2C535&ssl=1" srcset="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?w=1000&ssl=1 1000w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?resize=300%2C157&ssl=1 300w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?resize=150%2C78&ssl=1 150w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?resize=768%2C402&ssl=1 768w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/BLAST_nt_split-e1684187879813.png?resize=270%2C141&ssl=1 270w" sizes="auto, (max-width: 1024px) 100vw, 1024px"></amp-img> </figure>
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<p><span class="TextRun SCXW173460011 BCX0" lang="EN-US" data-contrast="auto"><span class="NormalTextRun SCXW173460011 BCX0">NEW in BLAST! </span><span class="NormalTextRun SCXW173460011 BCX0">We</span><span class="NormalTextRun SCXW173460011 BCX0"> made smaller nucleotide databases to help you find the sequences you need faster and easier. </span><span class="NormalTextRun SCXW173460011 BCX0">You can now find</span><span class="NormalTextRun SCXW173460011 BCX0"> these databases </span><span class="NormalTextRun SCXW173460011 BCX0">on the </span></span><a class="Hyperlink SCXW173460011 BCX0" href="https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn%20&PAGE_TYPE=BlastSearch&utm_source=ncbi_insights&utm_medium=referral&utm_campaign=blast-split-nt-download-20230516" target="_blank" rel="noreferrer noopener"><span class="TextRun Underlined SCXW173460011 BCX0" lang="EN-US" data-contrast="none"><span class="NormalTextRun SCXW173460011 BCX0" data-ccp-charstyle="Hyperlink">main nucleotide BLAST search page</span></span></a><span class="TextRun SCXW173460011 BCX0" lang="EN-US" data-contrast="auto"><span class="NormalTextRun SCXW173460011 BCX0"> (Figure 1) and even </span></span><a class="Hyperlink SCXW173460011 BCX0" href="https://www.ncbi.nlm.nih.gov/books/NBK569850/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=blast-split-nt-download-20230516" target="_blank" rel="noreferrer noopener"><span class="TextRun Underlined SCXW173460011 BCX0" lang="EN-US" data-contrast="none"><span class="NormalTextRun SCXW173460011 BCX0" data-ccp-charstyle="Hyperlink">download them</span></span></a><span class="TextRun SCXW173460011 BCX0" lang="EN-US" data-contrast="auto"><span class="NormalTextRun SCXW173460011 BCX0"> (</span></span><span class="TextRun SCXW173460011 BCX0" lang="EN-US" data-contrast="none"><span class="NormalTextRun SCXW173460011 BCX0">D</span><span class="NormalTextRun SCXW173460011 BCX0">atabases: </span><span class="SpellingError SCXW173460011 BCX0">nt_euk</span><span class="NormalTextRun SCXW173460011 BCX0">, </span><span class="SpellingError SCXW173460011 BCX0">nt_prok</span><span class="NormalTextRun SCXW173460011 BCX0">, </span><span class="SpellingError SCXW173460011 BCX0">nt_viruses</span><span class="NormalTextRun SCXW173460011 BCX0">, </span><span class="SpellingError SCXW173460011 BCX0">nt_others</span><span class="NormalTextRun SCXW173460011 BCX0">)</span></span><span class="TextRun SCXW173460011 BCX0" lang="EN-US" data-contrast="auto"><span class="NormalTextRun SCXW173460011 BCX0">.</span> <span class="NormalTextRun SCXW173460011 BCX0">The</span><span class="NormalTextRun SCXW173460011 BCX0">y</span><span class="NormalTextRun SCXW173460011 BCX0"> are separated by </span><span class="NormalTextRun SCXW173460011 BCX0">organism type</span><span class="NormalTextRun SCXW173460011 BCX0">, such as eukaryotes, prokaryotes, viruses, and others (including synthetic sequences). </span></span><amp-img class="alignright wp-image-11396 amp-wp-enforced-sizes i-amphtml-layout-intrinsic i-amphtml-layout-size-defined" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=728%2C177&ssl=1" alt="" width="728" height="177" srcset="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?w=1121&ssl=1 1121w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=300%2C73&ssl=1 300w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=1024%2C249&ssl=1 1024w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=150%2C37&ssl=1 150w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=768%2C187&ssl=1 768w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=270%2C66&ssl=1 270w" sizes="auto, (max-width: 728px) 100vw, 728px" layout="intrinsic" disable-inline-width="" data-hero-candidate="" data-hero i-amphtml-ssr i-amphtml-layout="intrinsic"><i-amphtml-sizer slot="i-amphtml-svc" class="i-amphtml-sizer"><img alt="" aria-hidden="true" class="i-amphtml-intrinsic-sizer" role="presentation" src="data:image/svg+xml;base64,PHN2ZyBoZWlnaHQ9IjE3NyIgd2lkdGg9IjcyOCIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIiB2ZXJzaW9uPSIxLjEiLz4="></i-amphtml-sizer><img class="i-amphtml-fill-content i-amphtml-replaced-content" decoding="async" loading="lazy" alt="" src="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=728%2C177&ssl=1" srcset="https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?w=1121&ssl=1 1121w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=300%2C73&ssl=1 300w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=1024%2C249&ssl=1 1024w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=150%2C37&ssl=1 150w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=768%2C187&ssl=1 768w, https://i0.wp.com/ncbiinsights.ncbi.nlm.nih.gov/wp-content/uploads/2023/05/Database_selection.png?resize=270%2C66&ssl=1 270w" sizes="auto, (max-width: 728px) 100vw, 728px"></amp-img></p>
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<p><em>Figure 1. The database selection section of the main nucleotide BLAST page with the ‘Experimental databases’ radio button selected. You can choose one or more of the organism database subsets for your search. </em></p>
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<h5>Features & Benefits</h5>
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<ul>
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<li data-leveltext="" data-font="Symbol" data-listid="1" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="1" data-aria-level="1"><span data-contrast="auto">Focus your search on relevant sequences</span><span data-ccp-props='{"201341983":0,"335559739":160,"335559740":259}'> </span></li>
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<li data-leveltext="" data-font="Symbol" data-listid="1" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="2" data-aria-level="1"><span data-contrast="auto">Download these smaller databases faster</span><span data-ccp-props='{"201341983":0,"335559739":160,"335559740":259}'> </span></li>
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<li data-leveltext="" data-font="Symbol" data-listid="1" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="3" data-aria-level="1"><span data-contrast="auto">Search for nucleotide sequences quickly</span><span data-ccp-props='{"201341983":0,"335559739":160,"335559740":259}'> </span></li>
|
||
<li data-leveltext="" data-font="Symbol" data-listid="1" data-list-defn-props='{"335552541":1,"335559684":-2,"335559685":720,"335559991":360,"469769226":"Symbol","469769242":[8226],"469777803":"left","469777804":"","469777815":"hybridMultilevel"}' aria-setsize="-1" data-aria-posinset="4" data-aria-level="1"><span data-contrast="auto">Search two or more of these databases at the same time</span><span data-ccp-props='{"201341983":0,"335559739":160,"335559740":259}'> </span></li>
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</ul>
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<h5>Stay up to date</h5>
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<p><span data-contrast="none">BLAST is a part of the </span><a href="https://www.ncbi.nlm.nih.gov/comparative-genomics-resource/?utm_source=ncbi_insights&utm_medium=referral&utm_campaign=blast-split-nt-download-20230516"><span data-contrast="none">NIH Comparative Genomics Resource (CGR)</span></a><span data-contrast="none">. CGR facilitates reliable comparative genomics analyses for all eukaryotic organisms through an NCBI Toolkit and community collaboration.</span><span data-ccp-props='{"201341983":0,"335559739":160,"335559740":259}'> </span></p>
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