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<h1 style="text-align: center">NLM DIR Seminar Schedule</h1>
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<h4>UPCOMING SEMINARS</h4>
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<li>
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<a href="/seminar/5213/detail/">March 11, 2025 <b>Sofya Garushyants</b></a><br>Tmn – bacterial anti-phage defense system
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</li>
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<li>
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<a href="/seminar/5214/detail/">March 18, 2025 <b>MG Hirsch</b></a><br>TBD
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</li>
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<li>
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<a href="/seminar/5215/detail/">March 25, 2025 <b>Yifan Yang</b></a><br>TBD
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</li>
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<li>
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<a href="/seminar/5216/detail/">April 1, 2025 <b>Roman Kogay</b></a><br>TBD
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</li>
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<li>
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<a href="/seminar/5217/detail/">April 8, 2025 <b>Jaya Srivastava</b></a><br>TBD
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<h4>RECENT SEMINARS</h4>
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<a href="/seminar/5212/detail/">March 4, 2025 <b>Sanasar Babajanyan</b></a><br>Evolution of antivirus defense in prokaryotes depending on the environmental virus load
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<!-- change object_list to recent_sem -->
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<a href="/seminar/5211/detail/">Feb. 25, 2025 <b>Zhizheng Wang</b></a><br>GeneAgent: Self-verification Language Agent for Gene Set Analysis using Domain Databases
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<!-- change object_list to recent_sem -->
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<li>
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<a href="/seminar/5210/detail/">Feb. 18, 2025 <b>Samuel Lee</b></a><br>Efficient predictions of alternative protein conformations by AlphaFold2-based sequence association
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<!-- change object_list to recent_sem -->
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<li>
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<a href="/seminar/5209/detail/">Feb. 11, 2025 <b>Po-Ting Lai</b></a><br>Enhancing Biomedical Relation Extraction with Directionality
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<!-- change object_list to recent_sem -->
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<li>
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<a href="/seminar/5208/detail/">Feb. 4, 2025 <b>Victor Tobiasson</b></a><br>On the dominance of Asgard contributions to Eukaryogenesis
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<h2>Scheduled Seminars on April 27, 2023</h2>
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<div class="tablet:grid-col-4"> Speaker</div>
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<div class="tablet:grid-col-8"><strong>Devlina Chakravarty</strong></div>
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<div class="tablet:grid-col-8"><strong></strong></div>
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<div class="tablet:grid-col-4"> Time</div>
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<div class="tablet:grid-col-8"><strong>3 p.m.</strong></div>
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<div class="tablet:grid-col-4"> Presentation Title</div>
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<div class="tablet:grid-col-8"><strong> Identification of a covert evolutionary pathway between two protein folds </strong></div>
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<div class="tablet:grid-col-4"> Location</div>
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<div class="tablet:grid-col-8"><a href=" https://teams.microsoft.com/l/meetup-join/19%3ameeting_NjFlN2E0MzQtZjJlNS00ZDNjLTgyZWQtOTk5ZDY3OTQ5MjYx%40thread.v2/0?context=%7b%22Tid%22%3a%2214b77578-9773-42d5-8507-251ca2dc2b06%22%2c%22Oid%22%3a%22ae960916-9330-4a80-a2e7-7a94d95d1da9%22%7d">Virtual</a> </div>
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<p class="padding-left-2">Contact <a href="mailto:NLMDIRSeminarScheduling@mail.nih.gov">NLMDIRSeminarScheduling@mail.nih.gov</a>
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with questions about this seminar.</p>
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<div class="grid-col padding-x-2 padding-bottom-2" id="textalign">
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<h4> Abstract: </h4>
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<p><p>Although homologous protein sequences are expected to adopt similar structures, some amino acid substitutions can interconvert α-helices and β-sheets. Such fold switching may have occurred over evolutionary history, but supporting evidence has been limited by the: (1) abundance and diversity of sequenced genes, (2) quantity of experimentally determined protein structures, and (3) assumptions underlying the statistical methods used to infer homology. Here, we overcame these barriers by applying multiple statistical methods to a family of ~600,000 bacterial response regulator proteins. We found that their homologous DNA-binding subunits assume divergent structures: helix-turn-helix versus α-helix+β-sheet (winged helix). Phylogenetic analyses, ancestral sequence reconstruction, and AlphaFold2 models indicated that amino acid substitutions facilitated a switch from helix-turn-helix into winged helix. This structural transformation likely expanded DNA-binding specificity. Our approach uncovers an evolutionary pathway between two protein folds and provides methodology to identify secondary structure switching in other protein families.</p></p>
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<h4>ARCHIVES</h4>
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<ul class="font-sans-3xs sem-list">
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<li><a href="/archive_seminars/2024/"><b>2024</b> Seminars</a></li>
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<li><a href="/archive_seminars/2023/"><b>2023</b> Seminars</a></li>
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<li><a href="/archive_seminars/2022/"><b>2022</b> Seminars</a></li>
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<li><a href="/archive_seminars/2021/"><b>2021</b> Seminars</a></li>
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<li><a href="/archive_seminars/2020/"><b>2020</b> Seminars</a></li>
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<li><a href="/archive_seminars/2019/"><b>2019</b> Seminars</a></li>
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<li><a href="/archive_seminars/2018/"><b>2018</b> Seminars</a></li>
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<li><a href="/archive_seminars/2017/"><b>2017</b> Seminars</a></li>
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<li><a href="/archive_seminars/2016/"><b>2016</b> Seminars</a></li>
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<li><a href="/archive_seminars/2015/"><b>2015</b> Seminars</a></li>
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<li><a href="/archive_seminars/2014/"><b>2014</b> Seminars</a></li>
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<li><a href="/archive_seminars/2013/"><b>2013</b> Seminars</a></li>
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<li><a href="/archive_seminars/2012/"><b>2012</b> Seminars</a></li>
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<li><a href="/archive_seminars/2011/"><b>2011</b> Seminars</a></li>
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<li><a href="/archive_seminars/2010/"><b>2010</b> Seminars</a></li>
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<li><a href="/archive_seminars/2009/"><b>2009</b> Seminars</a></li>
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