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<h1 style="text-align: center">NLM DIR Seminar Schedule</h1>
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<h4>UPCOMING SEMINARS</h4>
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<ul class="font-sans-3xs sem-list">
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<li>
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<a href="/seminar/5213/detail/">March 11, 2025 <b>Sofya Garushyants</b></a><br>Tmn – bacterial anti-phage defense system
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</li>
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<li>
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<a href="/seminar/5214/detail/">March 18, 2025 <b>MG Hirsch</b></a><br>TBD
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</li>
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<li>
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<a href="/seminar/5215/detail/">March 25, 2025 <b>Yifan Yang</b></a><br>TBD
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</li>
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<li>
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<a href="/seminar/5216/detail/">April 1, 2025 <b>Roman Kogay</b></a><br>TBD
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</li>
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<li>
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<a href="/seminar/5217/detail/">April 8, 2025 <b>Jaya Srivastava</b></a><br>TBD
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<h4>RECENT SEMINARS</h4>
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<!-- change object_list to recent_sem -->
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<li>
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<a href="/seminar/5212/detail/">March 4, 2025 <b>Sanasar Babajanyan</b></a><br>Evolution of antivirus defense in prokaryotes depending on the environmental virus load
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<!-- change object_list to recent_sem -->
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<li>
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<a href="/seminar/5211/detail/">Feb. 25, 2025 <b>Zhizheng Wang</b></a><br>GeneAgent: Self-verification Language Agent for Gene Set Analysis using Domain Databases
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<!-- change object_list to recent_sem -->
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<li>
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<a href="/seminar/5210/detail/">Feb. 18, 2025 <b>Samuel Lee</b></a><br>Efficient predictions of alternative protein conformations by AlphaFold2-based sequence association
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<!-- change object_list to recent_sem -->
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<li>
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<a href="/seminar/5209/detail/">Feb. 11, 2025 <b>Po-Ting Lai</b></a><br>Enhancing Biomedical Relation Extraction with Directionality
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</li>
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<!-- change object_list to recent_sem -->
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<li>
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<a href="/seminar/5208/detail/">Feb. 4, 2025 <b>Victor Tobiasson</b></a><br>On the dominance of Asgard contributions to Eukaryogenesis
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</li>
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</ul>
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<h2>Scheduled Seminars on Jan. 24, 2023</h2>
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<div class="tablet:grid-col-4"> Speaker</div>
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<div class="tablet:grid-col-8"><strong>Joseph Schafer</strong></div>
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<div class="tablet:grid-col-4"> PI/Lab</div>
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<div class="tablet:grid-col-8"><strong></strong></div>
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<div class="tablet:grid-col-4"> Time</div>
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<div class="tablet:grid-col-8"><strong>11 a.m.</strong></div>
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<div class="tablet:grid-col-4"> Presentation Title</div>
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<div class="tablet:grid-col-8"><strong> Evolutionary selection of proteins with two folds </strong></div>
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<div class="tablet:grid-col-4"> Location</div>
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<div class="tablet:grid-col-8"><strong> Virtual - see link below </strong></div>
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</div>
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<div class="grid-row">
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<p class="padding-left-2">Contact <a href="mailto:NLMDIRSeminarScheduling@mail.nih.gov">NLMDIRSeminarScheduling@mail.nih.gov</a>
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with questions about this seminar.</p>
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<div class="grid-col padding-x-2 padding-bottom-2" id="textalign">
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<h4> Abstract: </h4>
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<p><p>Although most globular proteins fold into a single stable structure, an increasing number have been shown to remodel their secondary and tertiary structures in response to cellular stimuli. State-of-the-art algorithms predict that these fold-switching proteins assume only one stable structure, missing their functionally critical alternative folds. Why these algorithms predict a single fold is unclear, but all of them infer protein structure from coevolved amino acid pairs. Here, we hypothesize that coevolutionary signatures are being missed. Suspecting that single-fold variants could be masking these signatures, we developed an approach to search both highly diverse protein superfamilies–composed of single-fold and fold-switching variants–and protein subfamilies with more fold-switching variants. This approach successfully revealed coevolution of amino acid pairs uniquely corresponding to both conformations of 54 fold-switching proteins from distinct families. Then, using a set of coevolved amino acid pairs predicted by our approach, we successfully biased AlphaFold2 to predict two experimentally consistent conformations of a candidate protein with unsolved structure. The discovery of widespread dual-fold coevolution indicates that fold-switching sequences have been preserved by natural selection, implying that their functionalities provide evolutionary advantage and paving the way for predictions of diverse protein structures from single sequences.</p></p>
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<h4>ARCHIVES</h4>
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<ul class="font-sans-3xs sem-list">
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<li><a href="/archive_seminars/2024/"><b>2024</b> Seminars</a></li>
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<li><a href="/archive_seminars/2023/"><b>2023</b> Seminars</a></li>
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<li><a href="/archive_seminars/2022/"><b>2022</b> Seminars</a></li>
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<li><a href="/archive_seminars/2021/"><b>2021</b> Seminars</a></li>
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<li><a href="/archive_seminars/2020/"><b>2020</b> Seminars</a></li>
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<li><a href="/archive_seminars/2019/"><b>2019</b> Seminars</a></li>
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<li><a href="/archive_seminars/2018/"><b>2018</b> Seminars</a></li>
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<li><a href="/archive_seminars/2017/"><b>2017</b> Seminars</a></li>
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<li><a href="/archive_seminars/2016/"><b>2016</b> Seminars</a></li>
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<li><a href="/archive_seminars/2015/"><b>2015</b> Seminars</a></li>
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<li><a href="/archive_seminars/2014/"><b>2014</b> Seminars</a></li>
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<li><a href="/archive_seminars/2013/"><b>2013</b> Seminars</a></li>
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<li><a href="/archive_seminars/2012/"><b>2012</b> Seminars</a></li>
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<li><a href="/archive_seminars/2011/"><b>2011</b> Seminars</a></li>
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<li><a href="/archive_seminars/2010/"><b>2010</b> Seminars</a></li>
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<li><a href="/archive_seminars/2009/"><b>2009</b> Seminars</a></li>
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</ul>
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