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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs5030868

Current Build 157

Released September 3, 2024

Organism
Homo sapiens
Position
chrX:154534419 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
G>A
Variation Type
SNV Single Nucleotide Variation
Frequency
A=0.0014023 (1475/1051813, GnomAD_exomes)
A=0.000559 (148/264690, TOPMED)
A=0.001386 (263/189758, ALFA) (+ 8 more)
A=0.000675 (74/109659, GnomAD_genomes)
A=0.00265 (232/87438, ExAC)
A=0.0008 (4/4805, 1000G_30X)
A=0.0008 (3/3775, 1000G)
A=0.0003 (1/3708, TWINSUK)
A=0.0007 (2/2889, ALSPAC)
A=0.028 (3/108, Qatari)
G=0.3 (2/6, SGDP_PRJ)
Clinical Significance
Reported in ClinVar
Gene : Consequence
G6PD : Missense Variant
Publications
24 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 189758 G=0.998614 A=0.001386 0.997892 0.000664 0.001444 32
European Sub 168480 G=0.998676 A=0.001324 0.998006 0.000653 0.001341 32
African Sub 5090 G=0.9994 A=0.0006 0.998821 0.0 0.001179 0
African Others Sub 178 G=1.000 A=0.000 1.0 0.0 0.0 N/A
African American Sub 4912 G=0.9994 A=0.0006 0.998779 0.0 0.001221 0
Asian Sub 4592 G=1.0000 A=0.0000 1.0 0.0 0.0 N/A
East Asian Sub 3166 G=1.0000 A=0.0000 1.0 0.0 0.0 N/A
Other Asian Sub 1426 G=1.0000 A=0.0000 1.0 0.0 0.0 N/A
Latin American 1 Sub 416 G=1.000 A=0.000 1.0 0.0 0.0 N/A
Latin American 2 Sub 1084 G=1.0000 A=0.0000 1.0 0.0 0.0 N/A
South Asian Sub 288 G=0.983 A=0.017 0.979167 0.013889 0.006944 32
Other Sub 9808 G=0.9967 A=0.0033 0.994698 0.001223 0.004078 32


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
gnomAD v4 - Exomes Global Study-wide 1051813 G=0.9985977 A=0.0014023
gnomAD v4 - Exomes European Sub 882362 G=0.999820 A=0.000180
gnomAD v4 - Exomes South Asian Sub 54137 G=0.98114 A=0.01886
gnomAD v4 - Exomes American Sub 35192 G=0.99997 A=0.00003
gnomAD v4 - Exomes East Asian Sub 30205 G=1.00000 A=0.00000
gnomAD v4 - Exomes African Sub 26401 G=0.99970 A=0.00030
gnomAD v4 - Exomes Ashkenazi Jewish Sub 19381 G=0.99453 A=0.00547
gnomAD v4 - Exomes Middle Eastern sub 4135 G=0.9565 A=0.0435
TopMed Global Study-wide 264690 G=0.999441 A=0.000559
Allele Frequency Aggregator Total Global 189758 G=0.998614 A=0.001386
Allele Frequency Aggregator European Sub 168480 G=0.998676 A=0.001324
Allele Frequency Aggregator Other Sub 9808 G=0.9967 A=0.0033
Allele Frequency Aggregator African Sub 5090 G=0.9994 A=0.0006
Allele Frequency Aggregator Asian Sub 4592 G=1.0000 A=0.0000
Allele Frequency Aggregator Latin American 2 Sub 1084 G=1.0000 A=0.0000
Allele Frequency Aggregator Latin American 1 Sub 416 G=1.000 A=0.000
Allele Frequency Aggregator South Asian Sub 288 G=0.983 A=0.017
gnomAD v4 - Genomes Global Study-wide 109659 G=0.999325 A=0.000675
gnomAD v4 - Genomes European Sub 59114 G=0.99981 A=0.00019
gnomAD v4 - Genomes African Sub 30815 G=0.99987 A=0.00013
gnomAD v4 - Genomes American Sub 10658 G=1.00000 A=0.00000
gnomAD v4 - Genomes East Asian Sub 3528 G=1.0000 A=0.0000
gnomAD v4 - Genomes South Asian Sub 2677 G=0.9851 A=0.0149
gnomAD v4 - Genomes Ashkenazi Jewish Sub 2649 G=0.9940 A=0.0060
gnomAD v4 - Genomes Middle Eastern sub 218 G=0.986 A=0.014
ExAC Global Study-wide 87438 G=0.99735 A=0.00265
ExAC Europe Sub 52284 G=0.99897 A=0.00103
ExAC Asian Sub 16742 G=0.99032 A=0.00968
ExAC American Sub 9297 G=0.9994 A=0.0006
ExAC African Sub 8491 G=0.9996 A=0.0004
ExAC Other Sub 624 G=0.989 A=0.011
1000Genomes_30X Global Study-wide 4805 G=0.9992 A=0.0008
1000Genomes_30X African Sub 1328 G=1.0000 A=0.0000
1000Genomes_30X Europe Sub 961 G=1.000 A=0.000
1000Genomes_30X South Asian Sub 883 G=0.995 A=0.005
1000Genomes_30X East Asian Sub 878 G=1.000 A=0.000
1000Genomes_30X American Sub 755 G=1.000 A=0.000
1000Genomes Global Study-wide 3775 G=0.9992 A=0.0008
1000Genomes African Sub 1003 G=1.0000 A=0.0000
1000Genomes Europe Sub 766 G=1.000 A=0.000
1000Genomes East Asian Sub 764 G=1.000 A=0.000
1000Genomes South Asian Sub 718 G=0.996 A=0.004
1000Genomes American Sub 524 G=1.000 A=0.000
UK 10K study - Twins TWIN COHORT Study-wide 3708 G=0.9997 A=0.0003
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 2889 G=0.9993 A=0.0007
Qatari Global Study-wide 108 G=0.972 A=0.028
SGDP_PRJ Global Study-wide 6 G=0.3 A=0.7
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr X NC_000023.11:g.154534419G>A
GRCh37.p13 chr X fix patch HG1497_PATCH NW_003871103.3:g.1968398G>A
G6PD RefSeqGene NG_009015.2:g.18154C>T
LOC127898544 genomic region NG_147855.1:g.511G>A
GRCh37.p13 chr X NC_000023.10:g.153762634G>A
Gene: G6PD, glucose-6-phosphate dehydrogenase (minus strand)
Molecule type Change Amino acid[Codon] SO Term
G6PD transcript variant 1 NM_000402.4:c.653C>T S [TCC] > F [TTC] Coding Sequence Variant
glucose-6-phosphate 1-dehydrogenase isoform a NP_000393.4:p.Ser218Phe S (Ser) > F (Phe) Missense Variant
G6PD transcript variant 3 NM_001360016.2:c.563C>T S [TCC] > F [TTC] Coding Sequence Variant
glucose-6-phosphate 1-dehydrogenase isoform b NP_001346945.1:p.Ser188Phe S (Ser) > F (Phe) Missense Variant
G6PD transcript variant 2 NM_001042351.3:c.563C>T S [TCC] > F [TTC] Coding Sequence Variant
glucose-6-phosphate 1-dehydrogenase isoform b NP_001035810.1:p.Ser188Phe S (Ser) > F (Phe) Missense Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Allele: A (allele ID: 25407 )
ClinVar Accession Disease Names Clinical Significance
RCV000011086.13 G6PD MEDITERRANEAN Other
RCV000011087.13 G6PD SASSARI Other
RCV000011088.13 G6PD CAGLIARI Other
RCV000079409.60 not provided Pathogenic
RCV000179363.58 Anemia, nonspherocytic hemolytic, due to G6PD deficiency Pathogenic-Likely-Pathogenic
RCV000445579.15 G6PD deficiency Pathogenic
RCV000477810.12 Anemia, nonspherocytic hemolytic, due to G6PD deficiency,Malaria, susceptibility to Pathogenic
RCV000623137.11 Inborn genetic diseases Pathogenic
RCV001250219.9 G6PD deficient hemolytic anemia Pathogenic
RCV001265539.9 Hemolytic anemia, G6PD deficient (favism) Pathogenic
RCV001528124.12 Malaria, susceptibility to Pathogenic
RCV002305806.10 Anemia, nonspherocytic hemolytic, due to G6PD deficiency Uncertain-Significance
RCV002305807.10 Anemia, nonspherocytic hemolytic, due to G6PD deficiency Uncertain-Significance
RCV002305808.10 Anemia, nonspherocytic hemolytic, due to G6PD deficiency Uncertain-Significance
RCV002305849.10 Anemia, nonspherocytic hemolytic, due to G6PD deficiency Likely-Pathogenic
RCV003925095.1 G6PD-related disorder Pathogenic
RCV004584350.1 See cases Likely-Pathogenic
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement G= A
GRCh38.p14 chr X NC_000023.11:g.154534419= NC_000023.11:g.154534419G>A
GRCh37.p13 chr X fix patch HG1497_PATCH NW_003871103.3:g.1968398= NW_003871103.3:g.1968398G>A
G6PD RefSeqGene NG_009015.2:g.18154= NG_009015.2:g.18154C>T
G6PD transcript variant 1 NM_000402.4:c.653= NM_000402.4:c.653C>T
G6PD transcript variant 1 NM_000402.3:c.653= NM_000402.3:c.653C>T
G6PD transcript variant 2 NM_001042351.3:c.563= NM_001042351.3:c.563C>T
G6PD transcript variant 2 NM_001042351.2:c.563= NM_001042351.2:c.563C>T
G6PD transcript variant 2 NM_001042351.1:c.563= NM_001042351.1:c.563C>T
G6PD transcript variant 3 NM_001360016.2:c.563= NM_001360016.2:c.563C>T
G6PD transcript variant 1 NM_001360016.1:c.563= NM_001360016.1:c.563C>T
LOC127898544 genomic region NG_147855.1:g.511= NG_147855.1:g.511G>A
GRCh37.p13 chr X NC_000023.10:g.153762634= NC_000023.10:g.153762634G>A
glucose-6-phosphate 1-dehydrogenase isoform a NP_000393.4:p.Ser218= NP_000393.4:p.Ser218Phe
glucose-6-phosphate 1-dehydrogenase isoform b NP_001035810.1:p.Ser188= NP_001035810.1:p.Ser188Phe
glucose-6-phosphate 1-dehydrogenase isoform b NP_001346945.1:p.Ser188= NP_001346945.1:p.Ser188Phe
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

54 SubSNP, 11 Frequency, 17 ClinVar submissions
No Submitter Submission ID Date (Build)
1 HGBASE ss7986035 Mar 31, 2003 (113)
2 ILLUMINA ss161109713 Dec 01, 2009 (131)
3 OMICIA ss244239881 Aug 29, 2012 (137)
4 OMIM-CURATED-RECORDS ss289479829 Jan 06, 2011 (133)
5 NHLBI-ESP ss342562463 May 09, 2011 (134)
6 ILLUMINA ss483026670 Sep 11, 2015 (146)
7 EXOME_CHIP ss491580924 May 04, 2012 (137)
8 CLINSEQ_SNP ss491955733 May 04, 2012 (137)
9 ILLUMINA ss780769153 Sep 11, 2015 (146)
10 JMKIDD_LAB ss1067612239 Apr 09, 2015 (144)
11 1000GENOMES ss1556698389 Apr 09, 2015 (144)
12 EVA_UK10K_ALSPAC ss1641785217 Apr 09, 2015 (144)
13 EVA_UK10K_TWINSUK ss1684779250 Apr 09, 2015 (144)
14 EVA_EXAC ss1694662764 Apr 09, 2015 (144)
15 ILLUMINA ss1752801563 Sep 11, 2015 (146)
16 ILLUMINA ss1917720703 Feb 17, 2016 (147)
17 WEILL_CORNELL_DGM ss1939852047 Feb 17, 2016 (147)
18 ILLUMINA ss1945981456 Feb 17, 2016 (147)
19 ILLUMINA ss1958229233 Feb 17, 2016 (147)
20 HUMAN_LONGEVITY ss2321325374 Dec 20, 2016 (150)
21 ILLUMINA ss2711191347 Oct 13, 2018 (152)
22 ILLUMINA ss2711191348 Oct 13, 2018 (152)
23 GNOMAD ss2745624974 Oct 13, 2018 (152)
24 GNOMAD ss2746166213 Oct 13, 2018 (152)
25 GNOMAD ss2984756128 Oct 13, 2018 (152)
26 AFFY ss2985493622 Oct 13, 2018 (152)
27 AFFY ss2986139338 Oct 13, 2018 (152)
28 ILLUMINA ss3023047865 Oct 13, 2018 (152)
29 ILLUMINA ss3635263272 Oct 13, 2018 (152)
30 ILLUMINA ss3637012661 Oct 13, 2018 (152)
31 ILLUMINA ss3640970743 Oct 13, 2018 (152)
32 ILLUMINA ss3645020370 Oct 13, 2018 (152)
33 ILLUMINA ss3653606133 Oct 13, 2018 (152)
34 ILLUMINA ss3654261373 Oct 13, 2018 (152)
35 ILLUMINA ss3726710861 Jul 14, 2019 (153)
36 ILLUMINA ss3744602552 Jul 14, 2019 (153)
37 ILLUMINA ss3745563776 Jul 14, 2019 (153)
38 ILLUMINA ss3773055382 Jul 14, 2019 (153)
39 EVA ss3825516068 Apr 27, 2020 (154)
40 SGDP_PRJ ss3892536814 Apr 27, 2020 (154)
41 FSA-LAB ss3984446469 Apr 27, 2021 (155)
42 EVA ss3986888532 Apr 27, 2021 (155)
43 EVA ss6328867542 Nov 02, 2024 (157)
44 GNOMAD ss6473686649 Nov 02, 2024 (157)
45 TOPMED ss8141613124 Nov 02, 2024 (157)
46 1000G_HIGH_COVERAGE ss8314364513 Nov 02, 2024 (157)
47 HUGCELL_USP ss8505716653 Nov 02, 2024 (157)
48 EVA ss8512474061 Nov 02, 2024 (157)
49 1000G_HIGH_COVERAGE ss8623703387 Nov 02, 2024 (157)
50 EVA ss8848241663 Nov 02, 2024 (157)
51 EVA ss8979247984 Nov 02, 2024 (157)
52 EVA ss8979924772 Nov 02, 2024 (157)
53 EVA ss8982064787 Nov 02, 2024 (157)
54 GNOMAD ss10110230410 Nov 02, 2024 (157)
55 1000Genomes NC_000023.10 - 153762634 Oct 13, 2018 (152)
56 1000Genomes_30X NC_000023.11 - 154534419 Nov 02, 2024 (157)
57 The Avon Longitudinal Study of Parents and Children NC_000023.10 - 153762634 Oct 13, 2018 (152)
58 ExAC NC_000023.10 - 153762634 Oct 13, 2018 (152)
59 gnomAD v4 - Exomes NC_000023.11 - 154534419 Nov 02, 2024 (157)
60 gnomAD v4 - Genomes NC_000023.11 - 154534419 Nov 02, 2024 (157)
61 Qatari NC_000023.10 - 153762634 Apr 27, 2020 (154)
62 SGDP_PRJ NC_000023.10 - 153762634 Apr 27, 2020 (154)
63 TopMed NC_000023.11 - 154534419 Apr 27, 2021 (155)
64 UK 10K study - Twins NC_000023.10 - 153762634 Oct 13, 2018 (152)
65 ALFA NC_000023.11 - 154534419 Nov 02, 2024 (157)
66 ClinVar RCV000011086.13 Nov 02, 2024 (157)
67 ClinVar RCV000011087.13 Nov 02, 2024 (157)
68 ClinVar RCV000011088.13 Nov 02, 2024 (157)
69 ClinVar RCV000079409.60 Nov 02, 2024 (157)
70 ClinVar RCV000179363.58 Nov 02, 2024 (157)
71 ClinVar RCV000445579.15 Nov 02, 2024 (157)
72 ClinVar RCV000477810.12 Nov 02, 2024 (157)
73 ClinVar RCV000623137.11 Nov 02, 2024 (157)
74 ClinVar RCV001250219.9 Nov 02, 2024 (157)
75 ClinVar RCV001265539.9 Nov 02, 2024 (157)
76 ClinVar RCV001528124.12 Nov 02, 2024 (157)
77 ClinVar RCV002305806.10 Nov 02, 2024 (157)
78 ClinVar RCV002305807.10 Nov 02, 2024 (157)
79 ClinVar RCV002305808.10 Nov 02, 2024 (157)
80 ClinVar RCV002305849.10 Nov 02, 2024 (157)
81 ClinVar RCV003925095.1 Nov 02, 2024 (157)
82 ClinVar RCV004584350.1 Nov 02, 2024 (157)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss491955733 NC_000023.9:153415827:G:A NC_000023.11:154534418:G:A (self)
84651606, 46612227, 10174611, 21893969, 44553794, 46612227, ss342562463, ss483026670, ss491580924, ss780769153, ss1067612239, ss1556698389, ss1641785217, ss1684779250, ss1694662764, ss1752801563, ss1917720703, ss1939852047, ss1945981456, ss1958229233, ss2711191347, ss2711191348, ss2745624974, ss2746166213, ss2984756128, ss2985493622, ss2986139338, ss3023047865, ss3635263272, ss3637012661, ss3640970743, ss3645020370, ss3653606133, ss3654261373, ss3744602552, ss3745563776, ss3773055382, ss3825516068, ss3892536814, ss3984446469, ss3986888532, ss6328867542, ss8512474061, ss8848241663, ss8979247984, ss8979924772, ss8982064787 NC_000023.10:153762633:G:A NC_000023.11:154534418:G:A (self)
RCV000011086.13, RCV000011087.13, RCV000011088.13, RCV000079409.60, RCV000179363.58, RCV000445579.15, RCV000477810.12, RCV000623137.11, RCV001250219.9, RCV001265539.9, RCV001528124.12, RCV002305806.10, RCV002305807.10, RCV002305808.10, RCV002305849.10, RCV003925095.1, RCV004584350.1, 111229322, 69040187, 638030936, 705219481, 15617270547, ss244239881, ss289479829, ss2321325374, ss3726710861, ss6473686649, ss8141613124, ss8314364513, ss8505716653, ss8623703387, ss10110230410 NC_000023.11:154534418:G:A NC_000023.11:154534418:G:A (self)
ss7986035, ss161109713 NT_167198.1:4680571:G:A NC_000023.11:154534418:G:A (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

24 citations for rs5030868
PMID Title Author Year Journal
1551674 Molecular heterogeneity underlying the G6PD Mediterranean phenotype. Corcoran CM et al. 1992 Human genetics
1972698 Linkage between a PvuII restriction fragment length polymorphism and G6PD A-202A/376G: evidence for a single origin of the common G6PD A- mutation. Beutler E et al. 1990 Human genetics
1978555 Origin and spread of the glucose-6-phosphate dehydrogenase variant (G6PD-Mediterranean) in the Middle East. Kurdi-Haidar B et al. 1990 American journal of human genetics
2503817 G6PD mahidol, a common deficient variant in South East Asia is caused by a (163)glycine----serine mutation. Vulliamy TJ et al. 1989 Nucleic acids research
3393536 Diverse point mutations in the human glucose-6-phosphate dehydrogenase gene cause enzyme deficiency and mild or severe hemolytic anemia. Vulliamy TJ et al. 1988 Proceedings of the National Academy of Sciences of the United States of America
4974311 A new structural variant of glucose-6-phosphate dehydrogenase with a high production rate (G6PD Hektoen). Dern RJ et al. 1969 The Journal of laboratory and clinical medicine
5305539 Characterization of glucose-6-phosphate dehydrogenase variants. I. Occurrence of a G6PD Seattle-like variant in Sardinia and its interaction with the G6PD Mediterranean variant. Lenzerini L et al. 1969 American journal of human genetics
5369703 Hereditary hemolytic anemia associated with glucose-6-phosphate dehydrogenase deficiency (Mediterranean type). Benbassat J et al. 1969 Israel journal of medical sciences
6698555 G6PD Cagliari: a new low activity glucose 6-phosphate dehydrogenase variant characterized by enhanced intracellular lability. Morelli A et al. 1984 Human genetics
7203486 Genetic heterogeneity of glucose 6-phosphate dehydrogenase deficiency in Sardinia. Testa U et al. 1980 Human genetics
9342374 Gilbert syndrome and glucose-6-phosphate dehydrogenase deficiency: a dose-dependent genetic interaction crucial to neonatal hyperbilirubinemia. Kaplan M et al. 1997 Proceedings of the National Academy of Sciences of the United States of America
11445808 Acute hemolysis and severe neonatal hyperbilirubinemia in glucose-6-phosphate dehydrogenase-deficient heterozygotes. Kaplan M et al. 2001 The Journal of pediatrics
12768444 Two cases of glucose-6-phosphate dehydrogenase-deficient Nepalese belonging to the G6PD Mediterranean-type, not India-Pakistan sub-type but Mediterranean-Middle East sub-type. Matsuoka H et al. 2003 Journal of human genetics
14278484 FUNCTIONALLY ABNORMAL GLUCOSE-6-PHOSPHATE DEHYDROGENASES. KIRKMAN HN et al. 1964 Cold Spring Harbor symposia on quantitative biology
19594365 G6PD Mediterranean S188F codon mutation is common among Saudi sickle cell patients and increases the risk of stroke. Hellani A et al. 2009 Genetic testing and molecular biomarkers
21931771 Path to facilitate the prediction of functional amino acid substitutions in red blood cell disorders--a computational approach. B R et al. 2011 PloS one
22906047 Neonatal hyperbilirubinemia in infants with G6PD c.563C > T Variant. Moiz B et al. 2012 BMC pediatrics
23479361 Glucose-6-phosphate dehydrogenase deficient variants are associated with reduced susceptibility to malaria in the Brazilian Amazon. Santana MS et al. 2013 Transactions of the Royal Society of Tropical Medicine and Hygiene
23757202 Free the data: one laboratory's approach to knowledge-based genomic variant classification and preparation for EMR integration of genomic data. Bean LJ et al. 2013 Human mutation
24586352 A population survey of the glucose-6-phosphate dehydrogenase (G6PD) 563C>T (Mediterranean) mutation in Afghanistan. Jamornthanyawat N et al. 2014 PloS one
25326637 Clinical exome sequencing for genetic identification of rare Mendelian disorders. Lee H et al. 2014 JAMA
28067620 Characterisation of the opposing effects of G6PD deficiency on cerebral malaria and severe malarial anaemia. Clarke GM et al. 2017 eLife
34093240 Targeted Next Generation Sequencing and Diagnosis of Congenital Hemolytic Anemias: A Three Years Experience Monocentric Study. Fermo E et al. 2021 Frontiers in physiology
36164570 Prevalence of exposure to pharmacogenetic drugs by the Saudis treated at the health care centers of the Ministry of National Guard. Alshabeeb MA et al. 2022 Saudi pharmaceutical journal
Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post825+45319f0