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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs2297595

Current Build 157

Released September 3, 2024

Organism
Homo sapiens
Position
chr1:97699535 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
T>A / T>C
Variation Type
SNV Single Nucleotide Variation
Frequency
C=0.0906999 (127026/1400508, GnomAD_exomes)
C=0.091082 (35755/392558, ALFA)
C=0.068990 (18261/264690, TOPMED) (+ 28 more)
C=0.079889 (11911/149094, GnomAD_genomes)
C=0.086366 (10470/121228, ExAC)
C=0.04560 (3589/78698, PAGE_STUDY)
C=0.01981 (1529/77200, 38KJPN)
C=0.07935 (1032/13006, GO-ESP)
C=0.0142 (103/7232, Korea4K)
C=0.0548 (351/6404, 1000G_30X)
C=0.0565 (283/5008, 1000G)
C=0.1540 (690/4480, Estonian)
C=0.0872 (336/3854, ALSPAC)
C=0.0879 (326/3708, TWINSUK)
C=0.0288 (95/3296, PRJNA289433)
C=0.0137 (40/2922, KOREAN)
C=0.0521 (98/1882, HapMap)
C=0.0136 (25/1832, Korea1K)
C=0.1162 (132/1136, Daghestan)
C=0.090 (90/998, GoNL)
C=0.019 (15/792, PRJEB37584)
C=0.031 (19/612, Vietnamese)
C=0.107 (64/600, NorthernSweden)
C=0.082 (44/534, MGP)
C=0.037 (13/356, PharmGKB)
C=0.211 (64/304, FINRISK)
C=0.111 (24/216, Qatari)
T=0.44 (30/68, SGDP_PRJ)
C=0.20 (8/40, GENOME_DK)
T=0.50 (6/12, Siberian)
C=0.50 (6/12, Siberian)
Clinical Significance
Reported in ClinVar
Gene : Consequence
DPYD : Missense Variant
Publications
28 citations
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315
Population Group Sample Size Ref Allele Alt Allele Ref HMOZ Alt HMOZ HTRZ HWEP
Total Global 392558 T=0.908918 C=0.091082 0.827108 0.009273 0.163619 15
European Sub 331132 T=0.902673 C=0.097327 0.815506 0.010159 0.174335 6
African Sub 16548 T=0.96568 C=0.03432 0.932681 0.001329 0.06599 0
African Others Sub 594 T=0.978 C=0.022 0.959596 0.003367 0.037037 3
African American Sub 15954 T=0.96521 C=0.03479 0.931679 0.001254 0.067068 0
Asian Sub 6978 T=0.9857 C=0.0143 0.971338 0.0 0.028662 0
East Asian Sub 5010 T=0.9860 C=0.0140 0.972056 0.0 0.027944 0
Other Asian Sub 1968 T=0.9848 C=0.0152 0.969512 0.0 0.030488 0
Latin American 1 Sub 1488 T=0.9227 C=0.0773 0.849462 0.004032 0.146505 0
Latin American 2 Sub 7240 T=0.9593 C=0.0407 0.918785 0.000276 0.080939 3
South Asian Sub 5226 T=0.9064 C=0.0936 0.823957 0.011098 0.164945 1
Other Sub 23946 T=0.91815 C=0.08185 0.844149 0.007851 0.148 2


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
gnomAD v4 - Exomes Global Study-wide 1400508 T=0.9093001 C=0.0906999
gnomAD v4 - Exomes European Sub 1164572 T=0.9030648 C=0.0969352
gnomAD v4 - Exomes South Asian Sub 86228 T=0.90998 C=0.09002
gnomAD v4 - Exomes American Sub 44718 T=0.96125 C=0.03875
gnomAD v4 - Exomes East Asian Sub 39678 T=0.98211 C=0.01789
gnomAD v4 - Exomes African Sub 33442 T=0.96744 C=0.03256
gnomAD v4 - Exomes Ashkenazi Jewish Sub 26112 T=0.92333 C=0.07667
gnomAD v4 - Exomes Middle Eastern sub 5758 T=0.8538 C=0.1462
Allele Frequency Aggregator Total Global 392558 T=0.908918 C=0.091082
Allele Frequency Aggregator European Sub 331132 T=0.902673 C=0.097327
Allele Frequency Aggregator Other Sub 23946 T=0.91815 C=0.08185
Allele Frequency Aggregator African Sub 16548 T=0.96568 C=0.03432
Allele Frequency Aggregator Latin American 2 Sub 7240 T=0.9593 C=0.0407
Allele Frequency Aggregator Asian Sub 6978 T=0.9857 C=0.0143
Allele Frequency Aggregator South Asian Sub 5226 T=0.9064 C=0.0936
Allele Frequency Aggregator Latin American 1 Sub 1488 T=0.9227 C=0.0773
TopMed Global Study-wide 264690 T=0.931010 C=0.068990
gnomAD v4 - Genomes Global Study-wide 149094 T=0.920111 C=0.079889
gnomAD v4 - Genomes European Sub 78536 T=0.88888 C=0.11112
gnomAD v4 - Genomes African Sub 41540 T=0.96608 C=0.03392
gnomAD v4 - Genomes American Sub 15252 T=0.93352 C=0.06648
gnomAD v4 - Genomes East Asian Sub 5182 T=0.9838 C=0.0162
gnomAD v4 - Genomes South Asian Sub 4822 T=0.9268 C=0.0732
gnomAD v4 - Genomes Ashkenazi Jewish Sub 3468 T=0.9158 C=0.0842
gnomAD v4 - Genomes Middle Eastern sub 294 T=0.891 C=0.109
ExAC Global Study-wide 121228 T=0.913634 C=0.086366
ExAC Europe Sub 73272 T=0.89018 C=0.10982
ExAC Asian Sub 25150 T=0.93718 C=0.06282
ExAC American Sub 11564 T=0.96671 C=0.03329
ExAC African Sub 10334 T=0.96400 C=0.03600
ExAC Other Sub 908 T=0.905 C=0.095
The PAGE Study Global Study-wide 78698 T=0.95440 C=0.04560
The PAGE Study AfricanAmerican Sub 32514 T=0.96402 C=0.03598
The PAGE Study Mexican Sub 10808 T=0.95633 C=0.04367
The PAGE Study Asian Sub 8318 T=0.9805 C=0.0195
The PAGE Study PuertoRican Sub 7918 T=0.9116 C=0.0884
The PAGE Study NativeHawaiian Sub 4534 T=0.9685 C=0.0315
The PAGE Study Cuban Sub 4230 T=0.9258 C=0.0742
The PAGE Study Dominican Sub 3828 T=0.9321 C=0.0679
The PAGE Study CentralAmerican Sub 2450 T=0.9600 C=0.0400
The PAGE Study SouthAmerican Sub 1982 T=0.9521 C=0.0479
The PAGE Study NativeAmerican Sub 1260 T=0.9270 C=0.0730
The PAGE Study SouthAsian Sub 856 T=0.903 C=0.097
38KJPN JAPANESE Study-wide 77200 T=0.98019 C=0.01981
GO Exome Sequencing Project Global Study-wide 13006 T=0.92065 C=0.07935
GO Exome Sequencing Project European American Sub 8600 T=0.9009 C=0.0991
GO Exome Sequencing Project African American Sub 4406 T=0.9591 C=0.0409
Korean Genome Project 4K KOREAN Study-wide 7232 T=0.9858 C=0.0142
1000Genomes_30X Global Study-wide 6404 T=0.9452 C=0.0548
1000Genomes_30X African Sub 1786 T=0.9709 C=0.0291
1000Genomes_30X Europe Sub 1266 T=0.8894 C=0.1106
1000Genomes_30X South Asian Sub 1202 T=0.9334 C=0.0666
1000Genomes_30X East Asian Sub 1170 T=0.9838 C=0.0162
1000Genomes_30X American Sub 980 T=0.939 C=0.061
1000Genomes Global Study-wide 5008 T=0.9435 C=0.0565
1000Genomes African Sub 1322 T=0.9690 C=0.0310
1000Genomes East Asian Sub 1008 T=0.9821 C=0.0179
1000Genomes Europe Sub 1006 T=0.8807 C=0.1193
1000Genomes South Asian Sub 978 T=0.939 C=0.061
1000Genomes American Sub 694 T=0.937 C=0.063
Genetic variation in the Estonian population Estonian Study-wide 4480 T=0.8460 C=0.1540
The Avon Longitudinal Study of Parents and Children PARENT AND CHILD COHORT Study-wide 3854 T=0.9128 C=0.0872
UK 10K study - Twins TWIN COHORT Study-wide 3708 T=0.9121 C=0.0879
MxGDAR/Encodat-PGx Global Study-wide 3296 T=0.9712 C=0.0288
MxGDAR/Encodat-PGx MxGDAR Sub 3296 T=0.9712 C=0.0288
KOREAN population from KRGDB KOREAN Study-wide 2922 T=0.9863 C=0.0137
HapMap Global Study-wide 1882 T=0.9479 C=0.0521
HapMap American Sub 764 T=0.950 C=0.050
HapMap African Sub 688 T=0.945 C=0.055
HapMap Asian Sub 254 T=0.992 C=0.008
HapMap Europe Sub 176 T=0.886 C=0.114
Korean Genome Project KOREAN Study-wide 1832 T=0.9864 C=0.0136
Genome-wide autozygosity in Daghestan Global Study-wide 1136 T=0.8838 C=0.1162
Genome-wide autozygosity in Daghestan Daghestan Sub 628 T=0.868 C=0.132
Genome-wide autozygosity in Daghestan Near_East Sub 144 T=0.889 C=0.111
Genome-wide autozygosity in Daghestan Central Asia Sub 122 T=0.893 C=0.107
Genome-wide autozygosity in Daghestan Europe Sub 108 T=0.898 C=0.102
Genome-wide autozygosity in Daghestan South Asian Sub 98 T=0.95 C=0.05
Genome-wide autozygosity in Daghestan Caucasus Sub 36 T=0.89 C=0.11
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 T=0.910 C=0.090
CNV burdens in cranial meningiomas Global Study-wide 792 T=0.981 C=0.019
CNV burdens in cranial meningiomas CRM Sub 792 T=0.981 C=0.019
A Vietnamese Genetic Variation Database Global Study-wide 612 T=0.969 C=0.031
Northern Sweden ACPOP Study-wide 600 T=0.893 C=0.107
Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 T=0.918 C=0.082
PharmGKB Aggregated Global Study-wide 356 T=0.963 C=0.037
PharmGKB Aggregated PA149745975 Sub 356 T=0.963 C=0.037
FINRISK Finnish from FINRISK project Study-wide 304 T=0.789 C=0.211
Qatari Global Study-wide 216 T=0.889 C=0.111
SGDP_PRJ Global Study-wide 68 T=0.44 C=0.56
The Danish reference pan genome Danish Study-wide 40 T=0.80 C=0.20
Siberian Global Study-wide 12 T=0.50 C=0.50
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 1 NC_000001.11:g.97699535T>A
GRCh38.p14 chr 1 NC_000001.11:g.97699535T>C
GRCh37.p13 chr 1 NC_000001.10:g.98165091T>A
GRCh37.p13 chr 1 NC_000001.10:g.98165091T>C
DPYD RefSeqGene (LRG_722) NG_008807.2:g.226525A>T
DPYD RefSeqGene (LRG_722) NG_008807.2:g.226525A>G
Gene: DPYD, dihydropyrimidine dehydrogenase (minus strand)
Molecule type Change Amino acid[Codon] SO Term
DPYD transcript variant 2 NM_001160301.1:c. N/A Genic Downstream Transcript Variant
DPYD transcript variant 1 NM_000110.4:c.496A>T M [ATG] > L [TTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform 1 NP_000101.2:p.Met166Leu M (Met) > L (Leu) Missense Variant
DPYD transcript variant 1 NM_000110.4:c.496A>G M [ATG] > V [GTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform 1 NP_000101.2:p.Met166Val M (Met) > V (Val) Missense Variant
DPYD transcript variant X2 XM_005270562.3:c.496A>T M [ATG] > L [TTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform X2 XP_005270619.2:p.Met166Leu M (Met) > L (Leu) Missense Variant
DPYD transcript variant X2 XM_005270562.3:c.496A>G M [ATG] > V [GTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform X2 XP_005270619.2:p.Met166Val M (Met) > V (Val) Missense Variant
DPYD transcript variant X1 XM_017000507.2:c.385A>T M [ATG] > L [TTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform X1 XP_016855996.1:p.Met129Leu M (Met) > L (Leu) Missense Variant
DPYD transcript variant X1 XM_017000507.2:c.385A>G M [ATG] > V [GTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform X1 XP_016855996.1:p.Met129Val M (Met) > V (Val) Missense Variant
DPYD transcript variant X3 XM_047448076.1:c.268A>T M [ATG] > L [TTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform X3 XP_047304032.1:p.Met90Leu M (Met) > L (Leu) Missense Variant
DPYD transcript variant X3 XM_047448076.1:c.268A>G M [ATG] > V [GTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform X3 XP_047304032.1:p.Met90Val M (Met) > V (Val) Missense Variant
DPYD transcript variant X4 XM_047448077.1:c.385A>T M [ATG] > L [TTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform X4 XP_047304033.1:p.Met129Leu M (Met) > L (Leu) Missense Variant
DPYD transcript variant X4 XM_047448077.1:c.385A>G M [ATG] > V [GTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform X4 XP_047304033.1:p.Met129Val M (Met) > V (Val) Missense Variant
DPYD transcript variant X5 XM_006710397.4:c.496A>T M [ATG] > L [TTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform X5 XP_006710460.1:p.Met166Leu M (Met) > L (Leu) Missense Variant
DPYD transcript variant X5 XM_006710397.4:c.496A>G M [ATG] > V [GTG] Coding Sequence Variant
dihydropyrimidine dehydrogenase [NADP(+)] isoform X5 XP_006710460.1:p.Met166Val M (Met) > V (Val) Missense Variant
DPYD transcript variant X6 XR_001737014.2:n.735A>T N/A Non Coding Transcript Variant
DPYD transcript variant X6 XR_001737014.2:n.735A>G N/A Non Coding Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Allele: C (allele ID: 105993 )
ClinVar Accession Disease Names Clinical Significance
RCV000086499.10 not provided Benign
RCV000245015.9 not specified Benign
RCV000276917.7 Dihydropyrimidine dehydrogenase deficiency Conflicting-Interpretations-Of-Pathogenicity
RCV001787915.2 capecitabine response - Toxicity Drug-Response
RCV001787916.2 fluorouracil response - Toxicity Drug-Response
RCV003891588.1 DPYD-related disorder Benign
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement T= A C
GRCh38.p14 chr 1 NC_000001.11:g.97699535= NC_000001.11:g.97699535T>A NC_000001.11:g.97699535T>C
GRCh37.p13 chr 1 NC_000001.10:g.98165091= NC_000001.10:g.98165091T>A NC_000001.10:g.98165091T>C
DPYD RefSeqGene (LRG_722) NG_008807.2:g.226525= NG_008807.2:g.226525A>T NG_008807.2:g.226525A>G
DPYD transcript variant 1 NM_000110.4:c.496= NM_000110.4:c.496A>T NM_000110.4:c.496A>G
DPYD transcript variant 1 NM_000110.3:c.496= NM_000110.3:c.496A>T NM_000110.3:c.496A>G
DPYD transcript variant X5 XM_006710397.4:c.496= XM_006710397.4:c.496A>T XM_006710397.4:c.496A>G
DPYD transcript variant X3 XM_006710397.3:c.496= XM_006710397.3:c.496A>T XM_006710397.3:c.496A>G
DPYD transcript variant X2 XM_006710397.2:c.496= XM_006710397.2:c.496A>T XM_006710397.2:c.496A>G
DPYD transcript variant X3 XM_006710397.1:c.496= XM_006710397.1:c.496A>T XM_006710397.1:c.496A>G
DPYD transcript variant X2 XM_005270562.3:c.496= XM_005270562.3:c.496A>T XM_005270562.3:c.496A>G
DPYD transcript variant X2 XM_005270562.2:c.496= XM_005270562.2:c.496A>T XM_005270562.2:c.496A>G
DPYD transcript variant X2 XM_005270562.1:c.496= XM_005270562.1:c.496A>T XM_005270562.1:c.496A>G
DPYD transcript variant X1 XM_017000507.2:c.385= XM_017000507.2:c.385A>T XM_017000507.2:c.385A>G
DPYD transcript variant X1 XM_017000507.1:c.385= XM_017000507.1:c.385A>T XM_017000507.1:c.385A>G
DPYD transcript variant X6 XR_001737014.2:n.735= XR_001737014.2:n.735A>T XR_001737014.2:n.735A>G
DPYD transcript variant X7 XR_001737014.1:n.735= XR_001737014.1:n.735A>T XR_001737014.1:n.735A>G
DPYD transcript variant X3 XM_047448076.1:c.268= XM_047448076.1:c.268A>T XM_047448076.1:c.268A>G
DPYD transcript variant X4 XM_047448077.1:c.385= XM_047448077.1:c.385A>T XM_047448077.1:c.385A>G
dihydropyrimidine dehydrogenase [NADP(+)] isoform 1 NP_000101.2:p.Met166= NP_000101.2:p.Met166Leu NP_000101.2:p.Met166Val
dihydropyrimidine dehydrogenase [NADP(+)] isoform X5 XP_006710460.1:p.Met166= XP_006710460.1:p.Met166Leu XP_006710460.1:p.Met166Val
dihydropyrimidine dehydrogenase [NADP(+)] isoform X2 XP_005270619.2:p.Met166= XP_005270619.2:p.Met166Leu XP_005270619.2:p.Met166Val
dihydropyrimidine dehydrogenase [NADP(+)] isoform X1 XP_016855996.1:p.Met129= XP_016855996.1:p.Met129Leu XP_016855996.1:p.Met129Val
dihydropyrimidine dehydrogenase [NADP(+)] isoform X3 XP_047304032.1:p.Met90= XP_047304032.1:p.Met90Leu XP_047304032.1:p.Met90Val
dihydropyrimidine dehydrogenase [NADP(+)] isoform X4 XP_047304033.1:p.Met129= XP_047304033.1:p.Met129Leu XP_047304033.1:p.Met129Val
dihydropyrimidine dehydrogenase [NADP(+)] isoform X2 XP_005270619.1:p.Met166= XP_005270619.1:p.Met166Leu XP_005270619.1:p.Met166Val
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

175 SubSNP, 30 Frequency, 6 ClinVar submissions
No Submitter Submission ID Date (Build)
1 YUSUKE ss3242112 Sep 28, 2001 (100)
2 PERLEGEN ss68775101 May 17, 2007 (127)
3 AFFY ss74818500 Aug 16, 2007 (128)
4 ILLUMINA ss74857738 Dec 07, 2007 (129)
5 AFFY ss76456133 Dec 07, 2007 (129)
6 CGM_KYOTO ss76866286 Dec 07, 2007 (129)
7 PHARMGKB_AB_DME ss84156640 Dec 16, 2007 (130)
8 CORNELL ss86240425 Mar 23, 2008 (129)
9 CANCER-GENOME ss86342033 Mar 23, 2008 (129)
10 BCMHGSC_JDW ss87648917 Mar 23, 2008 (129)
11 KRIBB_YJKIM ss104868949 Feb 06, 2009 (130)
12 SNP500CANCER ss105439820 Feb 06, 2009 (130)
13 ENSEMBL ss138043091 Dec 01, 2009 (131)
14 ILLUMINA ss153901421 Dec 01, 2009 (131)
15 ILLUMINA ss159379231 Dec 01, 2009 (131)
16 ILLUMINA ss160532487 Dec 01, 2009 (131)
17 ILLUMINA ss173269396 Jul 04, 2010 (132)
18 BUSHMAN ss198817775 Jul 04, 2010 (132)
19 1000GENOMES ss230651617 Jul 14, 2010 (132)
20 1000GENOMES ss238319989 Jul 15, 2010 (132)
21 GMI ss284103424 Apr 25, 2013 (138)
22 NHLBI-ESP ss341976728 May 09, 2011 (134)
23 ILLUMINA ss480519143 May 04, 2012 (137)
24 ILLUMINA ss480533640 May 04, 2012 (137)
25 ILLUMINA ss481344403 Sep 08, 2015 (146)
26 ILLUMINA ss485056912 May 04, 2012 (137)
27 1000GENOMES ss489753627 May 04, 2012 (137)
28 EXOME_CHIP ss491297130 May 04, 2012 (137)
29 CLINSEQ_SNP ss491598692 May 04, 2012 (137)
30 ILLUMINA ss537073480 Sep 08, 2015 (146)
31 TISHKOFF ss554468374 Apr 25, 2013 (138)
32 SSMP ss648244872 Apr 25, 2013 (138)
33 ILLUMINA ss778491120 Aug 21, 2014 (142)
34 ILLUMINA ss780879373 Aug 21, 2014 (142)
35 ILLUMINA ss782974674 Aug 21, 2014 (142)
36 ILLUMINA ss783564968 Aug 21, 2014 (142)
37 ILLUMINA ss783935944 Aug 21, 2014 (142)
38 ILLUMINA ss832231054 Apr 01, 2015 (144)
39 ILLUMINA ss832891024 Aug 21, 2014 (142)
40 ILLUMINA ss833481854 Aug 21, 2014 (142)
41 ILLUMINA ss833947124 Aug 21, 2014 (142)
42 JMKIDD_LAB ss974436257 Aug 21, 2014 (142)
43 EVA-GONL ss975468994 Aug 21, 2014 (142)
44 JMKIDD_LAB ss1067423568 Aug 21, 2014 (142)
45 JMKIDD_LAB ss1068117749 Aug 21, 2014 (142)
46 1000GENOMES ss1292055562 Aug 21, 2014 (142)
47 HAMMER_LAB ss1397254810 Sep 08, 2015 (146)
48 DDI ss1425907644 Apr 01, 2015 (144)
49 CLINVAR ss1536213428 Dec 17, 2014 (142)
50 EVA_GENOME_DK ss1574261062 Apr 01, 2015 (144)
51 EVA_FINRISK ss1584009487 Apr 01, 2015 (144)
52 EVA_DECODE ss1584846634 Apr 01, 2015 (144)
53 EVA_UK10K_ALSPAC ss1600788744 Apr 01, 2015 (144)
54 EVA_UK10K_TWINSUK ss1643782777 Apr 01, 2015 (144)
55 EVA_EXAC ss1685650354 Apr 01, 2015 (144)
56 EVA_MGP ss1710913168 Apr 01, 2015 (144)
57 EVA_SVP ss1712356208 Apr 01, 2015 (144)
58 ILLUMINA ss1751941303 Sep 08, 2015 (146)
59 ILLUMINA ss1751941304 Sep 08, 2015 (146)
60 ILLUMINA ss1917731627 Feb 12, 2016 (147)
61 WEILL_CORNELL_DGM ss1918669280 Feb 12, 2016 (147)
62 ILLUMINA ss1946002635 Feb 12, 2016 (147)
63 ILLUMINA ss1958296100 Feb 12, 2016 (147)
64 AMU ss1966654231 Feb 12, 2016 (147)
65 JJLAB ss2019855867 Sep 14, 2016 (149)
66 ILLUMINA ss2094783938 Dec 20, 2016 (150)
67 ILLUMINA ss2094968417 Dec 20, 2016 (150)
68 USC_VALOUEV ss2147874692 Dec 20, 2016 (150)
69 HUMAN_LONGEVITY ss2164918398 Dec 20, 2016 (150)
70 ILLUMINA ss2632552101 Nov 08, 2017 (151)
71 ILLUMINA ss2635001452 Nov 08, 2017 (151)
72 GRF ss2697801884 Nov 08, 2017 (151)
73 ILLUMINA ss2710678067 Nov 08, 2017 (151)
74 GNOMAD ss2731657562 Nov 08, 2017 (151)
75 GNOMAD ss2746378627 Nov 08, 2017 (151)
76 GNOMAD ss2758487478 Nov 08, 2017 (151)
77 AFFY ss2984868289 Nov 08, 2017 (151)
78 AFFY ss2985519710 Nov 08, 2017 (151)
79 SWEGEN ss2987285015 Nov 08, 2017 (151)
80 ILLUMINA ss3021112992 Nov 08, 2017 (151)
81 BIOINF_KMB_FNS_UNIBA ss3023691609 Nov 08, 2017 (151)
82 CSIRBIOHTS ss3029637211 Nov 08, 2017 (151)
83 CSHL ss3343589974 Nov 08, 2017 (151)
84 ILLUMINA ss3626162583 Oct 11, 2018 (152)
85 ILLUMINA ss3626162584 Oct 11, 2018 (152)
86 ILLUMINA ss3630586338 Oct 11, 2018 (152)
87 ILLUMINA ss3632902757 Oct 11, 2018 (152)
88 ILLUMINA ss3633597742 Oct 11, 2018 (152)
89 ILLUMINA ss3634338694 Oct 11, 2018 (152)
90 ILLUMINA ss3634338695 Oct 11, 2018 (152)
91 ILLUMINA ss3635291367 Oct 11, 2018 (152)
92 ILLUMINA ss3636016152 Oct 11, 2018 (152)
93 ILLUMINA ss3637041819 Oct 11, 2018 (152)
94 ILLUMINA ss3637774718 Oct 11, 2018 (152)
95 ILLUMINA ss3640046054 Oct 11, 2018 (152)
96 ILLUMINA ss3640046055 Oct 11, 2018 (152)
97 ILLUMINA ss3640984416 Oct 11, 2018 (152)
98 ILLUMINA ss3641278403 Oct 11, 2018 (152)
99 ILLUMINA ss3642784957 Oct 11, 2018 (152)
100 ILLUMINA ss3644498594 Oct 11, 2018 (152)
101 OMUKHERJEE_ADBS ss3646233654 Oct 11, 2018 (152)
102 ILLUMINA ss3651443652 Oct 11, 2018 (152)
103 ILLUMINA ss3651443653 Oct 11, 2018 (152)
104 ILLUMINA ss3653640174 Oct 11, 2018 (152)
105 EGCUT_WGS ss3655368061 Jul 12, 2019 (153)
106 EVA_DECODE ss3687342207 Jul 12, 2019 (153)
107 ILLUMINA ss3725047380 Jul 12, 2019 (153)
108 ACPOP ss3727302596 Jul 12, 2019 (153)
109 ILLUMINA ss3744348655 Jul 12, 2019 (153)
110 ILLUMINA ss3744639666 Jul 12, 2019 (153)
111 ILLUMINA ss3744639667 Jul 12, 2019 (153)
112 EVA ss3746558838 Jul 12, 2019 (153)
113 PAGE_CC ss3770827436 Jul 12, 2019 (153)
114 ILLUMINA ss3772140904 Jul 12, 2019 (153)
115 ILLUMINA ss3772140905 Jul 12, 2019 (153)
116 KHV_HUMAN_GENOMES ss3799559960 Jul 12, 2019 (153)
117 EVA ss3823633602 Apr 25, 2020 (154)
118 EVA ss3825570053 Apr 25, 2020 (154)
119 EVA ss3826320210 Apr 25, 2020 (154)
120 SGDP_PRJ ss3849451918 Apr 25, 2020 (154)
121 KRGDB ss3894526984 Apr 25, 2020 (154)
122 KOGIC ss3945068580 Apr 25, 2020 (154)
123 FSA-LAB ss3983938266 Apr 25, 2021 (155)
124 EVA ss3984447106 Apr 25, 2021 (155)
125 EVA ss3984461567 Apr 25, 2021 (155)
126 EVA ss3986128461 Apr 25, 2021 (155)
127 EVA ss4016927023 Apr 25, 2021 (155)
128 TOPMED ss4460215230 Apr 25, 2021 (155)
129 EVA ss6208443981 Nov 02, 2024 (157)
130 EVA ss6284043809 Nov 02, 2024 (157)
131 EVA ss6322091917 Nov 02, 2024 (157)
132 EVA ss6322917473 Nov 02, 2024 (157)
133 EVA ss6329345284 Nov 02, 2024 (157)
134 YEGNASUBRAMANIAN_LAB ss6334274657 Nov 02, 2024 (157)
135 EVA ss6349481154 Nov 02, 2024 (157)
136 KOGIC ss6352005927 Nov 02, 2024 (157)
137 EVA ss6403965895 Nov 02, 2024 (157)
138 EVA ss6404017298 Nov 02, 2024 (157)
139 GNOMAD ss6407783007 Nov 02, 2024 (157)
140 GNOMAD ss6494987543 Nov 02, 2024 (157)
141 TOMMO_GENOMICS ss8145255979 Nov 02, 2024 (157)
142 EVA ss8236871146 Nov 02, 2024 (157)
143 EVA ss8237270616 Nov 02, 2024 (157)
144 EVA ss8237632442 Nov 02, 2024 (157)
145 1000G_HIGH_COVERAGE ss8243277743 Nov 02, 2024 (157)
146 TRAN_CS_UWATERLOO ss8314396343 Nov 02, 2024 (157)
147 EVA ss8314637195 Nov 02, 2024 (157)
148 EVA ss8320589277 Nov 02, 2024 (157)
149 HUGCELL_USP ss8444234078 Nov 02, 2024 (157)
150 EVA ss8505960462 Nov 02, 2024 (157)
151 EVA ss8512473828 Nov 02, 2024 (157)
152 1000G_HIGH_COVERAGE ss8516094100 Nov 02, 2024 (157)
153 EVA ss8623915369 Nov 02, 2024 (157)
154 EVA ss8623994844 Nov 02, 2024 (157)
155 SANFORD_IMAGENETICS ss8624212923 Nov 02, 2024 (157)
156 SANFORD_IMAGENETICS ss8626107009 Nov 02, 2024 (157)
157 TOMMO_GENOMICS ss8670399619 Nov 02, 2024 (157)
158 EVA ss8799409419 Nov 02, 2024 (157)
159 EVA ss8799493171 Nov 02, 2024 (157)
160 EVA ss8800083418 Nov 02, 2024 (157)
161 YY_MCH ss8800849364 Nov 02, 2024 (157)
162 EVA ss8832354472 Nov 02, 2024 (157)
163 EVA ss8847163606 Nov 02, 2024 (157)
164 EVA ss8847548224 Nov 02, 2024 (157)
165 EVA ss8848266013 Nov 02, 2024 (157)
166 EVA ss8909421455 Nov 02, 2024 (157)
167 EVA ss8935519755 Nov 02, 2024 (157)
168 EVA ss8936510868 Nov 02, 2024 (157)
169 EVA ss8937966047 Nov 02, 2024 (157)
170 EVA ss8979283170 Nov 02, 2024 (157)
171 EVA ss8981422809 Nov 02, 2024 (157)
172 EVA ss8981429236 Nov 02, 2024 (157)
173 LNCC-LABINFO ss8982072045 Nov 02, 2024 (157)
174 EVA ss8982330906 Nov 02, 2024 (157)
175 TOMMO_GENOMICS ss8989744006 Nov 02, 2024 (157)
176 1000Genomes NC_000001.10 - 98165091 Oct 11, 2018 (152)
177 1000Genomes_30X NC_000001.11 - 97699535 Nov 02, 2024 (157)
178 The Avon Longitudinal Study of Parents and Children NC_000001.10 - 98165091 Oct 11, 2018 (152)
179 Genome-wide autozygosity in Daghestan NC_000001.9 - 97937679 Apr 25, 2020 (154)
180 Genetic variation in the Estonian population NC_000001.10 - 98165091 Oct 11, 2018 (152)
181 ExAC NC_000001.10 - 98165091 Oct 11, 2018 (152)
182 FINRISK NC_000001.10 - 98165091 Apr 25, 2020 (154)
183 The Danish reference pan genome NC_000001.10 - 98165091 Apr 25, 2020 (154)
184 gnomAD v4 - Exomes NC_000001.11 - 97699535 Nov 02, 2024 (157)
185 gnomAD v4 - Genomes NC_000001.11 - 97699535 Nov 02, 2024 (157)
186 GO Exome Sequencing Project NC_000001.10 - 98165091 Oct 11, 2018 (152)
187 Genome of the Netherlands Release 5 NC_000001.10 - 98165091 Apr 25, 2020 (154)
188 HapMap NC_000001.11 - 97699535 Apr 25, 2020 (154)
189 KOREAN population from KRGDB NC_000001.10 - 98165091 Apr 25, 2020 (154)
190 Korean Genome Project NC_000001.11 - 97699535 Apr 25, 2020 (154)
191 Korean Genome Project 4K NC_000001.11 - 97699535 Nov 02, 2024 (157)
192 Medical Genome Project healthy controls from Spanish population NC_000001.10 - 98165091 Apr 25, 2020 (154)
193 Northern Sweden NC_000001.10 - 98165091 Jul 12, 2019 (153)
194 The PAGE Study NC_000001.11 - 97699535 Jul 12, 2019 (153)
195 CNV burdens in cranial meningiomas NC_000001.10 - 98165091 Apr 25, 2021 (155)
196 MxGDAR/Encodat-PGx NC_000001.10 - 98165091 Apr 25, 2021 (155)
197 PharmGKB Aggregated NC_000001.11 - 97699535 Apr 25, 2020 (154)
198 Qatari NC_000001.10 - 98165091 Apr 25, 2020 (154)
199 SGDP_PRJ NC_000001.10 - 98165091 Apr 25, 2020 (154)
200 Siberian NC_000001.10 - 98165091 Apr 25, 2020 (154)
201 38KJPN NC_000001.11 - 97699535 Nov 02, 2024 (157)
202 TopMed NC_000001.11 - 97699535 Apr 25, 2021 (155)
203 UK 10K study - Twins NC_000001.10 - 98165091 Oct 11, 2018 (152)
204 A Vietnamese Genetic Variation Database NC_000001.10 - 98165091 Jul 12, 2019 (153)
205 ALFA NC_000001.11 - 97699535 Nov 02, 2024 (157)
206 ClinVar RCV000086499.10 Nov 02, 2024 (157)
207 ClinVar RCV000245015.9 Nov 02, 2024 (157)
208 ClinVar RCV000276917.7 Nov 02, 2024 (157)
209 ClinVar RCV001787915.2 Nov 02, 2024 (157)
210 ClinVar RCV001787916.2 Nov 02, 2024 (157)
211 ClinVar RCV003891588.1 Nov 02, 2024 (157)
Help

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs52827192 Sep 21, 2007 (128)
rs61243782 May 26, 2008 (130)
rs118014431 Aug 16, 2010 (132)
rs199469517 Dec 28, 2011 (136)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
ss8512473828 NC_000001.10:98165090:T:A NC_000001.11:97699534:T:A (self)
16117, ss87648917, ss160532487, ss198817775, ss284103424, ss480519143, ss491598692, ss1397254810, ss1584846634, ss1712356208, ss2635001452, ss3642784957 NC_000001.9:97937678:T:C NC_000001.11:97699534:T:C (self)
2817397, 1553123, 1106309, 4856287, 5948, 1623368, 92236, 673373, 1704378, 29920, 587461, 10879, 107, 711210, 1468898, 391046, 1553123, 334209, ss230651617, ss238319989, ss341976728, ss480533640, ss481344403, ss485056912, ss489753627, ss491297130, ss537073480, ss554468374, ss648244872, ss778491120, ss780879373, ss782974674, ss783564968, ss783935944, ss832231054, ss832891024, ss833481854, ss833947124, ss974436257, ss975468994, ss1067423568, ss1068117749, ss1292055562, ss1425907644, ss1574261062, ss1584009487, ss1600788744, ss1643782777, ss1685650354, ss1710913168, ss1751941303, ss1751941304, ss1917731627, ss1918669280, ss1946002635, ss1958296100, ss1966654231, ss2019855867, ss2094783938, ss2094968417, ss2147874692, ss2632552101, ss2697801884, ss2710678067, ss2731657562, ss2746378627, ss2758487478, ss2984868289, ss2985519710, ss2987285015, ss3021112992, ss3029637211, ss3343589974, ss3626162583, ss3626162584, ss3630586338, ss3632902757, ss3633597742, ss3634338694, ss3634338695, ss3635291367, ss3636016152, ss3637041819, ss3637774718, ss3640046054, ss3640046055, ss3640984416, ss3641278403, ss3644498594, ss3646233654, ss3651443652, ss3651443653, ss3653640174, ss3655368061, ss3727302596, ss3744348655, ss3744639666, ss3744639667, ss3746558838, ss3772140904, ss3772140905, ss3823633602, ss3825570053, ss3826320210, ss3849451918, ss3894526984, ss3983938266, ss3984447106, ss3984461567, ss3986128461, ss4016927023, ss6208443981, ss6284043809, ss6322091917, ss6322917473, ss6329345284, ss6334274657, ss6349481154, ss6403965895, ss8145255979, ss8237270616, ss8314637195, ss8320589277, ss8505960462, ss8512473828, ss8623915369, ss8623994844, ss8624212923, ss8626107009, ss8799409419, ss8799493171, ss8800083418, ss8832354472, ss8847163606, ss8847548224, ss8848266013, ss8935519755, ss8936510868, ss8937966047, ss8979283170, ss8981422809, ss8981429236, ss8982330906 NC_000001.10:98165090:T:C NC_000001.11:97699534:T:C (self)
RCV000086499.10, RCV000245015.9, RCV000276917.7, RCV001787915.2, RCV001787916.2, RCV003891588.1, 3620035, 3081341, 21302328, 133759, 1446581, 1857825, 48905, 322, 7119826, 23821565, 11276338187, ss1536213428, ss2164918398, ss3023691609, ss3687342207, ss3725047380, ss3770827436, ss3799559960, ss3945068580, ss4460215230, ss6352005927, ss6404017298, ss6407783007, ss6494987543, ss8236871146, ss8237632442, ss8243277743, ss8314396343, ss8444234078, ss8516094100, ss8670399619, ss8800849364, ss8909421455, ss8982072045, ss8989744006 NC_000001.11:97699534:T:C NC_000001.11:97699534:T:C (self)
ss3242112, ss68775101, ss74818500, ss74857738, ss76456133, ss76866286, ss84156640, ss86240425, ss86342033, ss104868949, ss105439820, ss138043091, ss153901421, ss159379231, ss173269396 NT_032977.9:68137008:T:C NC_000001.11:97699534:T:C (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

28 citations for rs2297595
PMID Title Author Year Journal
11156223 Clinical implications of dihydropyrimidine dehydrogenase (DPD) deficiency in patients with severe 5-fluorouracil-associated toxicity: identification of new mutations in the DPD gene. van Kuilenburg AB et al. 2000 Clinical cancer research
14635116 Detailed analysis of five mutations in dihydropyrimidine dehydrogenase detected in cancer patients with 5-fluorouracil-related side effects. Gross E et al. 2003 Human mutation
16115930 Analysis of the DPYD gene implicated in 5-fluorouracil catabolism in a cohort of Caucasian individuals. Seck K et al. 2005 Clinical cancer research
19104657 Strong association of a common dihydropyrimidine dehydrogenase gene polymorphism with fluoropyrimidine-related toxicity in cancer patients. Gross E et al. 2008 PloS one
19473056 Influence of dihydropyrimidine dehydrogenase gene (DPYD) coding sequence variants on the development of fluoropyrimidine-related toxicity in patients with high-grade toxicity and patients with excellent tolerance of fluoropyrimidine-based chemotherapy. Kleibl Z et al. 2009 Neoplasma
20803296 Intragenic deletions and a deep intronic mutation affecting pre-mRNA splicing in the dihydropyrimidine dehydrogenase gene as novel mechanisms causing 5-fluorouracil toxicity. van Kuilenburg AB et al. 2010 Human genetics
21498394 Relationship between single nucleotide polymorphisms and haplotypes in DPYD and toxicity and efficacy of capecitabine in advanced colorectal cancer. Deenen MJ et al. 2011 Clinical cancer research
22992668 Pharmacogenomics knowledge for personalized medicine. Whirl-Carrillo M et al. 2012 Clinical pharmacology and therapeutics
23692340 Genetic variation in MKL2 and decreased downstream PCTAIRE1 expression in extreme, fatal primary human microcephaly. Ramos EI et al. 2014 Clinical genetics
23736036 Pharmacogenetic variants in the DPYD, TYMS, CDA and MTHFR genes are clinically significant predictors of fluoropyrimidine toxicity. Loganayagam A et al. 2013 British journal of cancer
24648345 Comparative functional analysis of DPYD variants of potential clinical relevance to dihydropyrimidine dehydrogenase activity. Offer SM et al. 2014 Cancer research
24944790 Screening for 392 polymorphisms in 141 pharmacogenes. Kim JY et al. 2014 Biomedical reports
25110414 Pharmacogenetics research on chemotherapy resistance in colorectal cancer over the last 20 years. Panczyk M et al. 2014 World journal of gastroenterology
25741868 Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Richards S et al. 2015 Genetics in medicine
25782327 DPD and UGT1A1 deficiency in colorectal cancer patients receiving triplet chemotherapy with fluoropyrimidines, oxaliplatin and irinotecan. Falvella FS et al. 2015 British journal of clinical pharmacology
26099996 Clinical validity of a DPYD-based pharmacogenetic test to predict severe toxicity to fluoropyrimidines. Toffoli G et al. 2015 International journal of cancer
26216193 Genotype-phenotype correlations in 5-fluorouracil metabolism: a candidate DPYD haplotype to improve toxicity prediction. Gentile G et al. 2016 The pharmacogenomics journal
26801900 Pharmacogenetics driving personalized medicine: analysis of genetic polymorphisms related to breast cancer medications in Italian isolated populations. Cocca M et al. 2016 Journal of translational medicine
29065426 Dihydropyrimidine dehydrogenase pharmacogenetics for predicting fluoropyrimidine-related toxicity in the randomised, phase III adjuvant TOSCA trial in high-risk colon cancer patients. Ruzzo A et al. 2017 British journal of cancer
32619063 Impact of DPYD, DPYS, and UPB1 gene variations on severe drug-related toxicity in patients with cancer. Yokoi K et al. 2020 Cancer science
33384710 The Co-existence of ADHD With Autism in Saudi Children: An Analysis Using Next-Generation DNA Sequencing. Bogari NM et al. 2020 Frontiers in genetics
33491253 Haplotype structure defines effects of common DPYD variants c.85T > C (rs1801265) and c.496A > G (rs2297595) on dihydropyrimidine dehydrogenase activity: Implication for 5-fluorouracil toxicity. Hamzic S et al. 2021 British journal of clinical pharmacology
33519226 Genetic Diversity of Drug-Related Genes in Native Americans of the Brazilian Amazon. Fernandes MR et al. 2021 Pharmacogenomics and personalized medicine
33767731 Potential Impact of DPYD Variation on Fluoropyrimidine Drug Response in sub-Saharan African Populations. da Rocha JEB et al. 2021 Frontiers in genetics
34621706 Comprehensive analysis of important pharmacogenes in Koreans using the DMET™ platform. Kim B et al. 2021 Translational and clinical pharmacology
34780066 DPYD polymorphisms c.496A>G, c.2194G>A and c.85T>C and risk of severe adverse drug reactions in patients treated with fluoropyrimidine-based protocols. Božina N et al. 2022 British journal of clinical pharmacology
35582139 The use of pharmacogenetics to increase the safety of colorectal cancer patients treated with fluoropyrimidines. De Mattia E et al. 2019 Cancer drug resistance (Alhambra, Calif.)
36980706 Influence of Single-Nucleotide Polymorphisms on Clinical Outcomes of Capecitabine-Based Chemotherapy in Colorectal Cancer Patients: A Systematic Review. Cura Y et al. 2023 Cancers
Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post825+45319f0