Entry - #604273 - MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, NUCLEAR TYPE 1; MC5DN1 - OMIM
# 604273

MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, NUCLEAR TYPE 1; MC5DN1


Alternative titles; symbols

MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, ATPAF2 TYPE


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
17p11.2 ?Mitochondrial complex V (ATP synthase) deficiency, nuclear type 1 604273 AR 3 ATPAF2 608918
Clinical Synopsis
 
Phenotypic Series
 

INHERITANCE
- Autosomal recessive
GROWTH
Height
- Short stature
Other
- Failure to thrive
HEAD & NECK
Head
- Microcephaly
Face
- Retrognathia
Ears
- Low-set ears
Nose
- Prominent nasal bridge
CARDIOVASCULAR
Heart
- Hypertrophic cardiomyopathy
ABDOMEN
Liver
- Hepatomegaly
GENITOURINARY
External Genitalia (Male)
- Hypospadias
- Cryptorchidism
MUSCLE, SOFT TISSUES
- Hypotonia
- ATP synthase deficiency
NEUROLOGIC
Central Nervous System
- Psychomotor retardation
- Ataxia
METABOLIC FEATURES
- Lactic acidosis
LABORATORY ABNORMALITIES
- Decreased ATP synthase in muscle, heart, liver, and brain
- Increased serum lactate
- Intermittent 3-methylglutaconic aciduria
- Hyperammonemia
MISCELLANEOUS
- Onset in infancy
- Early death may occur
MOLECULAR BASIS
- Caused by mutation in the transmembrane protein 70 gene (TMEM70, 612418.0001)
- Caused by mutation in the ATP synthase F1 complex assembly factor-2 gene (ATPAF2, 608918.0001)

TEXT

A number sign (#) is used with this entry because of evidence that mitochondrial complex V (ATP synthase) deficiency nuclear type 1 (MC5DN1) is caused by homozygous mutation in the ATPAF2 gene (608918) on chromosome 17p11. One such patient has been reported.


Description

A distinct group of inborn defects of complex V (ATP synthase) is represented by the enzyme deficiency due to nuclear genome mutations characterized by a selective inhibition of ATP synthase biogenesis. Biochemically, the patients show a generalized decrease in the content of ATP synthase complex which is less than 30% of normal. Most cases present with neonatal-onset hypotonia, lactic acidosis, hyperammonemia, hypertrophic cardiomyopathy, and 3-methylglutaconic aciduria. Many patients die within a few months or years (summary by Mayr et al., 2010).

Genetic Heterogeneity of Mitochondrial Complex V Deficiency

Other nuclear types of mitochondrial complex V deficiency include MC5DN2 (614052), caused by mutation in the TMEM70 gene (612418) on chromosome 8q21; MC5DN3 (614053), caused by mutation in the ATP5E gene (ATP5F1E; 606153) on chromosome 20q13; MC5DN4A (620358) and MC5DN4B (615228), both caused by mutation in the ATP5A1 gene (ATP5F1A; 164360) on chromosome 18q; MC5DN5 (618120), caused by mutation in the ATP5D gene (ATP5F1D; 603150) on chromosome 19p13; MC5DN6 (618683), caused by mutation in the USMG5 gene (ATP5MD; 615204) on chromosome 10q24; and MC5DN7 (620359), caused by mutation in the ATP5PO gene (600828) on chromosome 21q22.

Mutations in the mitochondrial-encoded MTATP6 (516060) and MTATP8 (516070) genes can also cause mitochondrial complex V deficiency (see, e.g., 500015).


Clinical Features

Houstek et al. (1999) reported a male patient with ATPase deficiency who was born of healthy first-cousin parents. He was born at term with oligohydramnios, birth weight less than the 5th percentile, and length of 45 cm. Dysmorphic features included frontal bossing, short philtrum, micrognathia, low-set ears, and hypospadias. He had progressive hypotonia, severe lactic acidosis, cardiomegaly, and hepatomegaly, and died from heart failure on day 2. The mother had been pregnant 8 times, with 1 miscarriage. Three boys were healthy, but 2 girls died in the first week of life, probably due to severe metabolic acidosis. One boy with a congenital heart defect died at the age of 3 years due to failure to thrive and progressive psychomotor retardation. Three children of the mother's sister died within the first week of life without any metabolic investigations. Analysis of mtDNA in studies of the proband's fibroblasts and derived transmitochondrial cybrids revealed the nuclear origin of the defect. Because of the selectivity of the defect, Houstek et al. (1999) suggested that some assembly factor for ATPase biosynthesis might be missing.

De Meirleir et al. (2004) reported a girl, born of consanguineous Moroccan parents, with mitochondrial ATPase deficiency. She had a birth weight of 2.55 kg and head circumference of 30.5 cm, and presented with dysmorphic features, including a large mouth, prominent nasal bridge, micrognathia, rocker-bottom feet, and flexion contractures of the limbs associated with camptodactyly. She was hypertonic and had an enlarged liver and hypoplastic kidneys. Urinary, plasma, and CSF lactate levels were elevated, and she had increased urinary 3-methylglutaconic acid, a marker of inner mitochondrial membrane dysfunction. Cerebral MRI revealed marked cortical-subcortical atrophy, dysgenesis of the corpus callosum with absent anterior genu and rostrum, and hypoplasia of white matter. She had severe developmental delay with seizures and failure to thrive, and died at 14 months of age from intercurrent infection.

De Meirleir et al. (2004) reported a second unrelated male infant with complex V deficiency. At birth, he had an enlarged liver, respiratory insufficiency, and lactic acidosis. He had multiple cardiac arrests, and died from cardiac arrest on day 3.

Sperl et al. (2006) reported 14 patients with an isolated deficiency of mitochondrial ATP synthase (7 to 30% of control) presumably caused by nuclear genetic defects. Seven patients had previously been reported (e.g., Houstek et al., 1999; De Meirleir et al., 2004). Only 1 of the 14 patients, a female reported by De Meirleir et al. (2004), had been found to have a mutation (see MOLECULAR GENETICS). All patients had neonatal onset of lactic acidemia, variable failure to thrive, hypotonia, and respiratory insufficiency. Many had dysmorphic features, including microcephaly, low-set ears, retrognathia, and prominent nasal bridge. Eleven patients had hypertrophic cardiomyopathy, and all had psychomotor retardation. Laboratory studies showed intermittent 3-methylglutaconic aciduria, which appeared to be a marker for deranged mitochondrial energy metabolism. Seven patients died in infancy.

Wortmann et al. (2009) reported 3 females from a large Roma family with neonatal cardiomyopathy. The first girl presented with severe failure to thrive, hypertension, cardiomyopathy, and Wolf-Parkinson-White syndrome at age 3 years. A maternal cousin had hypertrophic cardiomyopathy with aortic and pulmonary valve stenosis. The third girl had feeding problems, hypertrophic cardiomyopathy, and aortic stenosis. Two patients had occasional extrasystoles. None had hypotonia, and all showed nearly normal psychomotor development at ages 3, 5, and 9 years. Laboratory studies showed very low ATP production, severe complex V deficiency, and moderate 3-methylglutaconic aciduria.


Molecular Genetics

In a female infant with decreased complex V activity, De Meirleir et al. (2004) identified homozygosity for a missense mutation in the ATPAF2 gene (W94R; 608918.0001). The consanguineous Moroccan parents and a healthy sib were heterozygous for the mutation, which was not found in 50 healthy Moroccan controls.

In a male infant with complex V deficiency, De Meirleir et al. (2004) screened for mutations in genes coding for ATP synthase subunits alpha (ATP5A; 164360), beta (ATP5B; 102910), and gamma (ATP5C; 108729) of F1 and assembly genes ATPAF1 (608917) and ATPAF2 but did not identify any mutations.


REFERENCES

  1. De Meirleir, L., Seneca, S., Lissens, W., De Clercq, I., Eyskens, F., Gerlo, E., Smet, J., Van Coster, R. Respiratory chain complex V deficiency due to a mutation in the assembly gene ATP12. J. Med. Genet. 41: 120-124, 2004. [PubMed: 14757859, related citations] [Full Text]

  2. Houstek, J., Klement, P., Floryk, D., Antonicka, H., Hermanska, J., Kalous, M., Hansikova, H., Houst'kova, H., Chowdhury, S. K. R., Rosipal, S., Kmoch, S., Stratilova, L., Zeman, J. A novel deficiency of mitochondrial ATPase of nuclear origin. Hum. Molec. Genet. 8: 1967-1974, 1999. [PubMed: 10484764, related citations] [Full Text]

  3. Mayr, J. A., Havlickova, V., Zimmermann, F., Magler, I., Kaplanova, V., Jesina, P., Pecinova, A., Nuskova, H., Koch, J., Sperl, W., Houstek, J. Mitochondrial ATP synthase deficiency due to a mutation in the ATP5E gene for the F1 epsilon subunit. Hum. Molec. Genet. 19: 3430-3439, 2010. [PubMed: 20566710, related citations] [Full Text]

  4. Sperl, W., Jesina, P., Zeman, J., Mayr, J. A., DeMeirleir, L., VanCoster, R., Pickova, A., Hansikova, H., Houstkova, H., Krejcik, Z., Koch, J., Smet, J., Muss, W., Holme, E., Houstek, J. Deficiency of mitochondrial ATP synthase of nuclear genetic origin. Neuromusc. Disord. 16: 821-829, 2006. [PubMed: 17052906, related citations] [Full Text]

  5. Wortmann, S. B., Rodenburg, R. J. T., Jonckheere, A., de Vries, M. C., Huizing, M., Heldt, K., van den Heuvel, L. P., Wendel, U., Kluijtmans, L. A., Engelke, U. F., Wevers, R. A., Smeitink, J. A. M., Morava, E. Biochemical and genetic analysis of 3-methylglutaconic aciduria type IV: a diagnostic strategy. Brain 132: 136-146, 2009. [PubMed: 19015156, related citations] [Full Text]


George E. Tiller - updated : 6/13/2011
Cassandra L. Kniffin - updated : 3/23/2010
Cassandra L. Kniffin - updated : 11/19/2008
Marla J. F. O'Neill - updated : 9/21/2004
Creation Date:
Victor A. McKusick : 11/1/1999
alopez : 05/04/2023
ckniffin : 05/03/2023
carol : 07/01/2022
carol : 12/02/2019
ckniffin : 11/30/2019
carol : 02/11/2019
carol : 09/14/2018
ckniffin : 09/13/2018
carol : 08/17/2017
joanna : 06/24/2016
alopez : 5/14/2013
ckniffin : 5/13/2013
terry : 6/21/2011
carol : 6/21/2011
carol : 6/13/2011
ckniffin : 4/1/2010
wwang : 3/26/2010
ckniffin : 3/23/2010
alopez : 11/21/2008
ckniffin : 11/19/2008
wwang : 11/8/2007
carol : 9/29/2004
carol : 9/21/2004
carol : 9/21/2004
mgross : 11/17/1999
mgross : 11/1/1999

# 604273

MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, NUCLEAR TYPE 1; MC5DN1


Alternative titles; symbols

MITOCHONDRIAL COMPLEX V (ATP SYNTHASE) DEFICIENCY, ATPAF2 TYPE


ORPHA: 254913;   DO: 0050768;  


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
17p11.2 ?Mitochondrial complex V (ATP synthase) deficiency, nuclear type 1 604273 Autosomal recessive 3 ATPAF2 608918

TEXT

A number sign (#) is used with this entry because of evidence that mitochondrial complex V (ATP synthase) deficiency nuclear type 1 (MC5DN1) is caused by homozygous mutation in the ATPAF2 gene (608918) on chromosome 17p11. One such patient has been reported.


Description

A distinct group of inborn defects of complex V (ATP synthase) is represented by the enzyme deficiency due to nuclear genome mutations characterized by a selective inhibition of ATP synthase biogenesis. Biochemically, the patients show a generalized decrease in the content of ATP synthase complex which is less than 30% of normal. Most cases present with neonatal-onset hypotonia, lactic acidosis, hyperammonemia, hypertrophic cardiomyopathy, and 3-methylglutaconic aciduria. Many patients die within a few months or years (summary by Mayr et al., 2010).

Genetic Heterogeneity of Mitochondrial Complex V Deficiency

Other nuclear types of mitochondrial complex V deficiency include MC5DN2 (614052), caused by mutation in the TMEM70 gene (612418) on chromosome 8q21; MC5DN3 (614053), caused by mutation in the ATP5E gene (ATP5F1E; 606153) on chromosome 20q13; MC5DN4A (620358) and MC5DN4B (615228), both caused by mutation in the ATP5A1 gene (ATP5F1A; 164360) on chromosome 18q; MC5DN5 (618120), caused by mutation in the ATP5D gene (ATP5F1D; 603150) on chromosome 19p13; MC5DN6 (618683), caused by mutation in the USMG5 gene (ATP5MD; 615204) on chromosome 10q24; and MC5DN7 (620359), caused by mutation in the ATP5PO gene (600828) on chromosome 21q22.

Mutations in the mitochondrial-encoded MTATP6 (516060) and MTATP8 (516070) genes can also cause mitochondrial complex V deficiency (see, e.g., 500015).


Clinical Features

Houstek et al. (1999) reported a male patient with ATPase deficiency who was born of healthy first-cousin parents. He was born at term with oligohydramnios, birth weight less than the 5th percentile, and length of 45 cm. Dysmorphic features included frontal bossing, short philtrum, micrognathia, low-set ears, and hypospadias. He had progressive hypotonia, severe lactic acidosis, cardiomegaly, and hepatomegaly, and died from heart failure on day 2. The mother had been pregnant 8 times, with 1 miscarriage. Three boys were healthy, but 2 girls died in the first week of life, probably due to severe metabolic acidosis. One boy with a congenital heart defect died at the age of 3 years due to failure to thrive and progressive psychomotor retardation. Three children of the mother's sister died within the first week of life without any metabolic investigations. Analysis of mtDNA in studies of the proband's fibroblasts and derived transmitochondrial cybrids revealed the nuclear origin of the defect. Because of the selectivity of the defect, Houstek et al. (1999) suggested that some assembly factor for ATPase biosynthesis might be missing.

De Meirleir et al. (2004) reported a girl, born of consanguineous Moroccan parents, with mitochondrial ATPase deficiency. She had a birth weight of 2.55 kg and head circumference of 30.5 cm, and presented with dysmorphic features, including a large mouth, prominent nasal bridge, micrognathia, rocker-bottom feet, and flexion contractures of the limbs associated with camptodactyly. She was hypertonic and had an enlarged liver and hypoplastic kidneys. Urinary, plasma, and CSF lactate levels were elevated, and she had increased urinary 3-methylglutaconic acid, a marker of inner mitochondrial membrane dysfunction. Cerebral MRI revealed marked cortical-subcortical atrophy, dysgenesis of the corpus callosum with absent anterior genu and rostrum, and hypoplasia of white matter. She had severe developmental delay with seizures and failure to thrive, and died at 14 months of age from intercurrent infection.

De Meirleir et al. (2004) reported a second unrelated male infant with complex V deficiency. At birth, he had an enlarged liver, respiratory insufficiency, and lactic acidosis. He had multiple cardiac arrests, and died from cardiac arrest on day 3.

Sperl et al. (2006) reported 14 patients with an isolated deficiency of mitochondrial ATP synthase (7 to 30% of control) presumably caused by nuclear genetic defects. Seven patients had previously been reported (e.g., Houstek et al., 1999; De Meirleir et al., 2004). Only 1 of the 14 patients, a female reported by De Meirleir et al. (2004), had been found to have a mutation (see MOLECULAR GENETICS). All patients had neonatal onset of lactic acidemia, variable failure to thrive, hypotonia, and respiratory insufficiency. Many had dysmorphic features, including microcephaly, low-set ears, retrognathia, and prominent nasal bridge. Eleven patients had hypertrophic cardiomyopathy, and all had psychomotor retardation. Laboratory studies showed intermittent 3-methylglutaconic aciduria, which appeared to be a marker for deranged mitochondrial energy metabolism. Seven patients died in infancy.

Wortmann et al. (2009) reported 3 females from a large Roma family with neonatal cardiomyopathy. The first girl presented with severe failure to thrive, hypertension, cardiomyopathy, and Wolf-Parkinson-White syndrome at age 3 years. A maternal cousin had hypertrophic cardiomyopathy with aortic and pulmonary valve stenosis. The third girl had feeding problems, hypertrophic cardiomyopathy, and aortic stenosis. Two patients had occasional extrasystoles. None had hypotonia, and all showed nearly normal psychomotor development at ages 3, 5, and 9 years. Laboratory studies showed very low ATP production, severe complex V deficiency, and moderate 3-methylglutaconic aciduria.


Molecular Genetics

In a female infant with decreased complex V activity, De Meirleir et al. (2004) identified homozygosity for a missense mutation in the ATPAF2 gene (W94R; 608918.0001). The consanguineous Moroccan parents and a healthy sib were heterozygous for the mutation, which was not found in 50 healthy Moroccan controls.

In a male infant with complex V deficiency, De Meirleir et al. (2004) screened for mutations in genes coding for ATP synthase subunits alpha (ATP5A; 164360), beta (ATP5B; 102910), and gamma (ATP5C; 108729) of F1 and assembly genes ATPAF1 (608917) and ATPAF2 but did not identify any mutations.


REFERENCES

  1. De Meirleir, L., Seneca, S., Lissens, W., De Clercq, I., Eyskens, F., Gerlo, E., Smet, J., Van Coster, R. Respiratory chain complex V deficiency due to a mutation in the assembly gene ATP12. J. Med. Genet. 41: 120-124, 2004. [PubMed: 14757859] [Full Text: https://doi.org/10.1136/jmg.2003.012047]

  2. Houstek, J., Klement, P., Floryk, D., Antonicka, H., Hermanska, J., Kalous, M., Hansikova, H., Houst'kova, H., Chowdhury, S. K. R., Rosipal, S., Kmoch, S., Stratilova, L., Zeman, J. A novel deficiency of mitochondrial ATPase of nuclear origin. Hum. Molec. Genet. 8: 1967-1974, 1999. [PubMed: 10484764] [Full Text: https://doi.org/10.1093/hmg/8.11.1967]

  3. Mayr, J. A., Havlickova, V., Zimmermann, F., Magler, I., Kaplanova, V., Jesina, P., Pecinova, A., Nuskova, H., Koch, J., Sperl, W., Houstek, J. Mitochondrial ATP synthase deficiency due to a mutation in the ATP5E gene for the F1 epsilon subunit. Hum. Molec. Genet. 19: 3430-3439, 2010. [PubMed: 20566710] [Full Text: https://doi.org/10.1093/hmg/ddq254]

  4. Sperl, W., Jesina, P., Zeman, J., Mayr, J. A., DeMeirleir, L., VanCoster, R., Pickova, A., Hansikova, H., Houstkova, H., Krejcik, Z., Koch, J., Smet, J., Muss, W., Holme, E., Houstek, J. Deficiency of mitochondrial ATP synthase of nuclear genetic origin. Neuromusc. Disord. 16: 821-829, 2006. [PubMed: 17052906] [Full Text: https://doi.org/10.1016/j.nmd.2006.08.008]

  5. Wortmann, S. B., Rodenburg, R. J. T., Jonckheere, A., de Vries, M. C., Huizing, M., Heldt, K., van den Heuvel, L. P., Wendel, U., Kluijtmans, L. A., Engelke, U. F., Wevers, R. A., Smeitink, J. A. M., Morava, E. Biochemical and genetic analysis of 3-methylglutaconic aciduria type IV: a diagnostic strategy. Brain 132: 136-146, 2009. [PubMed: 19015156] [Full Text: https://doi.org/10.1093/brain/awn296]


Contributors:
George E. Tiller - updated : 6/13/2011
Cassandra L. Kniffin - updated : 3/23/2010
Cassandra L. Kniffin - updated : 11/19/2008
Marla J. F. O'Neill - updated : 9/21/2004

Creation Date:
Victor A. McKusick : 11/1/1999

Edit History:
alopez : 05/04/2023
ckniffin : 05/03/2023
carol : 07/01/2022
carol : 12/02/2019
ckniffin : 11/30/2019
carol : 02/11/2019
carol : 09/14/2018
ckniffin : 09/13/2018
carol : 08/17/2017
joanna : 06/24/2016
alopez : 5/14/2013
ckniffin : 5/13/2013
terry : 6/21/2011
carol : 6/21/2011
carol : 6/13/2011
ckniffin : 4/1/2010
wwang : 3/26/2010
ckniffin : 3/23/2010
alopez : 11/21/2008
ckniffin : 11/19/2008
wwang : 11/8/2007
carol : 9/29/2004
carol : 9/21/2004
carol : 9/21/2004
mgross : 11/17/1999
mgross : 11/1/1999