<!DOCTYPE HTML>
<html>
<head>
<title>PssmParameters</title>
<script type="text/javascript" src="/core/jquery/jquery-3.6.0.min.js">
</script>
<script type="text/javascript">
jQuery.getScript("/core/alerts/alerts.js", function () { galert(['pre']) });
</script>
</head>
<body>
<h3>PssmParameters</h3><pre>Defined in file <a href="scoremat.asn.html">scoremat.asn</a>
C++ class: <a href="../doxyhtml/classCPssmParameters.html">CPssmParameters</a>
PssmParameters ::= SEQUENCE {
-- pseudocount constant used for PSSM. This field corresponds to beta in
-- equation 2 of Nucleic Acids Res. 2001 Jul 15;29(14):2994-3005.
pseudocount INTEGER OPTIONAL,
-- data needed by formatrpsdb to create RPS-BLAST databases. matrixName is
-- populated by PSI-BLAST
rpsdbparams <a href="FormatRpsDbParameters.html">FormatRpsDbParameters</a> OPTIONAL,
-- alignment constraints needed by sequence-structure threader
-- and other global or local block-alignment algorithms
constraints <a href="CoreDef.html">CoreDef</a> OPTIONAL,
-- bit score threshold for specific conserved domain hits
bitScoreThresh REAL OPTIONAL,
-- bit score threshold for reporting any conserved domain hits
bitScoreReportingThresh REAL OPTIONAL,
-- conserved functional sites with annotations
annotatedSites <a href="Site-annot-set.html">Site-annot-set</a> OPTIONAL
}</pre>
</body>
</html>