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LOC9330306 pentatricopeptide repeat-containing protein At1g50270 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9330306, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9330306
Gene description
pentatricopeptide repeat-containing protein At1g50270
Locus tag
ARALYDRAFT_682067
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9330306 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302555.1 (26240878..26243323)

NW_003302555.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110224373 Neighboring gene uncharacterized LOC9327626 Neighboring gene BTB/POZ domain-containing protein At1g50280 Neighboring gene transcription initiation factor TFIID subunit 15 Neighboring gene sugar transport protein 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302555 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At1g50270
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302555.1 Reference v.1.0 Primary Assembly

    Range
    26240878..26243323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002891518.2 → XP_002891564.1  pentatricopeptide repeat-containing protein At1g50270

    See identical proteins and their annotated locations for XP_002891564.1

    UniProtKB/TrEMBL
    D7KFX8
    Conserved Domains (5) summary
    TIGR00756
    Location:272 → 306
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00006
    Location:478 → 504
    TPR; TPR repeat [structural motif]
    sd00004
    Location:374 → 401
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:170 → 200
    PPR; PPR repeat
    pfam13041
    Location:370 → 419
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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