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LOC4342196 uncharacterized LOC4342196 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4342196, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4342196
Gene description
uncharacterized LOC4342196
Locus tag
OSNPB_070106000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4342196 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (342884..351323, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (335231..343826, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939579 Neighboring gene probable disease resistance protein At5g45440 Neighboring gene uncharacterized LOC4342197 Neighboring gene sugar transport protein MST3-like Neighboring gene uncharacterized LOC107277213

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4342196
Names
B1317D11.117-1
B1317D11.117-2
Os07g0106000
P0446F04.148-2
P0617C02.122-1
P0617C02.122-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    342884..351323 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015790959.3 → XP_015646445.1  uncharacterized protein LOC4342196 isoform X1

    UniProtKB/TrEMBL
    B8B6J7, Q0D957, Q69JD2, Q7XAL0

  2. XM_015790960.3 → XP_015646446.1  uncharacterized protein LOC4342196 isoform X2

    Conserved Domains (1) summary
    COG1409
    Location:327 → 428
    CpdA; 3',5'-cyclic AMP phosphodiesterase CpdA [Signal transduction mechanisms]
Nucleotide Protein
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