U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4328377 F-box protein At2g39490 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328377, updated on 13-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4328377
Gene description
F-box protein At2g39490
Locus tag
OSNPB_020160200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ9003_G05.2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4328377 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3263379..3265357)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3254917..3256931)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 Neighboring gene DExH-box ATP-dependent RNA helicase DExH11 Neighboring gene uncharacterized LOC4328376 Neighboring gene vacuolar protein 8 Neighboring gene sugar transport protein MST8-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
F-box protein At2g39490
Names
B1103G11.37
F-box LRR and FBD domain-containing protein FBLD1
Os02g0160200

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    3263379..3265357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770192.3 → XP_015625678.1  F-box protein At2g39490

    UniProtKB/TrEMBL
    A2X161, Q6ETH1, Q6H7U8
    Conserved Domains (2) summary
    sd00032
    Location:187 → 211
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:21 → 57
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials