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Brca1 BRCA1 DNA repair associated [ Myodes glareolus (Bank vole) ]

Gene ID: 125407890, updated on 3-Dec-2024

Summary

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Gene symbol
Brca1
Gene description
BRCA1 DNA repair associated
Gene type
protein coding
RefSeq status
MODEL
Organism
Myodes glareolus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Myodes
Orthologs
human mouse all
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Genomic context

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See Brca1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current Bank_vole1_10x (GCF_902806735.1) Unplaced Scaffold NW_025965242.1 (354546..422515, complement)

NW_025965242.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125407889 Neighboring gene vesicle amine transport 1 Neighboring gene Rho family GTPase 2 Neighboring gene NBR1 autophagy cargo receptor Neighboring gene transmembrane protein 106A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025965242 Unplaced Scaffold Reference Bank_vole1_10x Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chordate embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dosage compensation by inactivation of X chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BRCA1-A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of BRCA1-BARD1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
breast cancer type 1 susceptibility protein
Names
breast cancer 1
breast cancer protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myodes glareolus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bank_vole1_10x Primary Assembly

Genomic

  1. NW_025965242.1 Reference Bank_vole1_10x Primary Assembly

    Range
    354546..422515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048445740.1 → XP_048301697.1  breast cancer type 1 susceptibility protein isoform X4

    UniProtKB/TrEMBL
    A0AAW0HHC3

  2. XM_048445738.1 → XP_048301695.1  breast cancer type 1 susceptibility protein isoform X2

    UniProtKB/TrEMBL
    A0AAW0HHC3

  3. XM_048445739.1 → XP_048301696.1  breast cancer type 1 susceptibility protein isoform X3

    UniProtKB/TrEMBL
    A0AAW0HHC3

  4. XM_048445737.1 → XP_048301694.1  breast cancer type 1 susceptibility protein isoform X1

    UniProtKB/TrEMBL
    A0AAW0HHC3

  5. XM_048445741.1 → XP_048301698.1  breast cancer type 1 susceptibility protein isoform X5

    UniProtKB/TrEMBL
    A0AAW0HHC3
Nucleotide Protein
Heading Accession and Version

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