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LOC105372100 uncharacterized LOC105372100 [ Homo sapiens (human) ]

Gene ID: 105372100, updated on 4-Mar-2025

Summary

Gene symbol
LOC105372100
Gene description
uncharacterized LOC105372100
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

See LOC105372100 in Genome Data Viewer
Location:
18q21.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (47668095..47694847)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (47858982..47885901)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene MIR4527 host gene Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:44935608-44936108 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:44936109-44936609 Neighboring gene microRNA 4527 Neighboring gene VISTA enhancer hs679 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:45108697-45109197 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:45186392-45187015 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:45187016-45187638 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9425 Neighboring gene thiopurine S-methyltransferase pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9426 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:45354093-45354738 Neighboring gene SMAD family member 2 Neighboring gene MPRA-validated peak3140 silencer Neighboring gene MT-CO2 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13287 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr18:45444735-45445347 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9427 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9428 Neighboring gene uncharacterized LOC124904297

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    47668095..47694847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_935438.3 RNA Sequence

  2. XR_935436.4 RNA Sequence

  3. XR_935434.4 RNA Sequence

  4. XR_935437.3 RNA Sequence

  5. XR_935435.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    47858982..47885901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088391.1 RNA Sequence

  2. XR_007088392.1 RNA Sequence

  3. XR_007088389.1 RNA Sequence

  4. XR_007088393.1 RNA Sequence

  5. XR_007088390.1 RNA Sequence