nsv99
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:23,864
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 337 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 102 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 187 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 337 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 27 SVs from 10 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv99 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 29,557,426 | 29,572,796 |
| nsv99 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 1,833,117 | 1,856,980 |
| nsv99 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 1,720,633 | 1,744,496 |
| nsv99 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 29,849,630 | 29,865,000 |
| nsv99 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000015.8 | Chr15 | 27,636,922 | 27,652,292 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv99 | insertion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv99 | Remapped | Pass | NT_187660.1:g.(183 3117_?)_(?_1856980 )ins8945 | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 1,833,117 | 1,856,980 |
| nssv99 | Remapped | Pass | NW_011332701.1:g.( 1720633_?)_(?_1744 496)ins8945 | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 1,720,633 | 1,744,496 |
| nssv99 | Remapped | Perfect | NC_000015.10:g.(29 557426_?)_(?_29572 796)ins8945 | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 29,557,426 | 29,572,796 |
| nssv99 | Remapped | Perfect | NC_000015.9:g.(298 49630_?)_(?_298650 00)ins8945 | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 29,849,630 | 29,865,000 |
| nssv99 | Submitted genomic | NC_000015.8:g.(276 36922_?)_(?_276522 92)ins8945 | NCBI35 (hg17) | NC_000015.8 | Chr15 | 27,636,922 | 27,652,292 |