nsv939901
- Organism: Homo sapiens
- Study:nstd84 (de Ligt et al. 2013)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:121
- Publication(s):de Ligt et al. 2013
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 287 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 287 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv939901 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000024.10 | ChrY | 19,589,506 | 19,589,506 | 19,589,626 | 19,589,626 |
| nsv939901 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000024.9 | ChrY | 21,751,392 | 21,751,392 | 21,751,512 | 21,751,512 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv1671731 | copy number loss | 1 | Sequencing | Read depth | 0 | 1,040 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1671731 | Remapped | Perfect | NC_000024.10:g.(19 589506_?)_(?_19589 626)del | GRCh38.p12 | First Pass | NC_000024.10 | ChrY | 19,589,506 | 19,589,626 |
| nssv1671731 | Submitted genomic | NC_000024.9:g.(217 51392_?)_(?_217515 12)del | GRCh37 (hg19) | NC_000024.9 | ChrY | 21,751,392 | 21,751,512 |