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dbVar

Database of genomic structural variation

nsv3203482

Organism: Homo sapiens

Study:nstd152 (Chaisson et al. 2019)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:41,991

Publication(s):Chaisson et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1542 SVs from 93 studies. See in: genome view

Submitted genomic34,505,505-34,552,535

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3203482	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000015.10	Chr15	34,508,025 (-2520, +2520)	34,550,015 (-2520, +2520)
nsv3203482	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	34,800,226 (-2520, +2520)	34,842,216 (-2520, +2520)

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14372782	copy number variation	SAMN00001694	Sequencing	Sequence alignment	13	16,419
nssv14377795	copy number variation	HG00512	Sequencing	Sequence alignment	0	13,827
nssv14379432	copy number variation	SAMN00006580	Sequencing	Sequence alignment	14	14,212
nssv14380240	copy number variation	SAMN00001695	Sequencing	Sequence alignment	14	15,732
nssv14384240	copy number variation	HG00514	Sequencing	Sequence alignment	14	39,861
nssv14385715	copy number variation	SAMN00006581	Sequencing	Sequence alignment	14	41,185
nssv14390790	copy number variation	SAMN00006466	Sequencing	Sequence alignment	14	14,137
nssv14391532	copy number variation	SAMN00001696	Sequencing	Sequence alignment	15	45,591
nssv14392553	copy number variation	SAMN00006579	Sequencing	Sequence alignment	0	13,953

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14372782	Submitted genomic		GRCh38 (hg38)		NC_000015.10	Chr15	34,508,025 (-2520, +2520)	34,550,015 (-2520, +2520)
nssv14377795	Submitted genomic		GRCh38 (hg38)		NC_000015.10	Chr15	34,508,025 (-2520, +2520)	34,550,015 (-2520, +2520)
nssv14379432	Submitted genomic		GRCh38 (hg38)		NC_000015.10	Chr15	34,508,025 (-2520, +2520)	34,550,015 (-2520, +2520)
nssv14380240	Submitted genomic		GRCh38 (hg38)		NC_000015.10	Chr15	34,508,025 (-2520, +2520)	34,550,015 (-2520, +2520)
nssv14384240	Submitted genomic		GRCh38 (hg38)		NC_000015.10	Chr15	34,508,025 (-2520, +2520)	34,550,015 (-2520, +2520)
nssv14385715	Submitted genomic		GRCh38 (hg38)		NC_000015.10	Chr15	34,508,025 (-2520, +2520)	34,550,015 (-2520, +2520)
nssv14390790	Submitted genomic		GRCh38 (hg38)		NC_000015.10	Chr15	34,508,025 (-2520, +2520)	34,550,015 (-2520, +2520)
nssv14391532	Submitted genomic		GRCh38 (hg38)		NC_000015.10	Chr15	34,508,025 (-2520, +2520)	34,550,015 (-2520, +2520)
nssv14392553	Submitted genomic		GRCh38 (hg38)		NC_000015.10	Chr15	34,508,025 (-2520, +2520)	34,550,015 (-2520, +2520)
nssv14372782	Remapped	Perfect	GRCh37.p13	First Pass	NC_000015.9	Chr15	34,800,226 (-2520, +2520)	34,842,216 (-2520, +2520)
nssv14377795	Remapped	Perfect	GRCh37.p13	First Pass	NC_000015.9	Chr15	34,800,226 (-2520, +2520)	34,842,216 (-2520, +2520)
nssv14379432	Remapped	Perfect	GRCh37.p13	First Pass	NC_000015.9	Chr15	34,800,226 (-2520, +2520)	34,842,216 (-2520, +2520)
nssv14380240	Remapped	Perfect	GRCh37.p13	First Pass	NC_000015.9	Chr15	34,800,226 (-2520, +2520)	34,842,216 (-2520, +2520)
nssv14384240	Remapped	Perfect	GRCh37.p13	First Pass	NC_000015.9	Chr15	34,800,226 (-2520, +2520)	34,842,216 (-2520, +2520)
nssv14385715	Remapped	Perfect	GRCh37.p13	First Pass	NC_000015.9	Chr15	34,800,226 (-2520, +2520)	34,842,216 (-2520, +2520)
nssv14390790	Remapped	Perfect	GRCh37.p13	First Pass	NC_000015.9	Chr15	34,800,226 (-2520, +2520)	34,842,216 (-2520, +2520)
nssv14391532	Remapped	Perfect	GRCh37.p13	First Pass	NC_000015.9	Chr15	34,800,226 (-2520, +2520)	34,842,216 (-2520, +2520)
nssv14392553	Remapped	Perfect	GRCh37.p13	First Pass	NC_000015.9	Chr15	34,800,226 (-2520, +2520)	34,842,216 (-2520, +2520)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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